TCONS_00023711 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023711
Unique Name	TCONS_00023711
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1240

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000460:48739..55944+

transcript sequence

>TCONS_00023711 ID=TCONS_00023711|Name=TCONS_00023711|organism=Clytia hemisphaerica|type=transcript|length=1240bp
CAATCCCGCGTTTTGTGACTGTGGTCACGCGGGTCGAAGGAAATTTCTTT
CccacatttttaattttcacttcAAGCACGTGGAACGCGAATGGCTGACA
GTCCTCAAGCAAAGTcaagaaaacttgaaaatcaAGACCAAATGAAAGTC
GAAATGGCAGCAGCAgtctcaacaacaacaacaaacggCCATATTAATGG
TGATGTCCTCAAAAAGAAATGCCCTCCCTCTGATGAGAAACCTGCAGTCA
ATGACATGACAAGCAAGGATTATTATTTCGACTCATATGCTCACTTTGGT
ATCCATGAAGAAATGTTGAAAGATGAAGTACGCACACTCACTTATCGAAA
TTCTATGTACAATAACAGACATCTCTTCAAGGGAAAGGTTGTTCTTGATG
TTGGTTGTGGGACTGGCATTTTGAGTATGTTTGCAAAAAAAGCAGGCGCA
AAACATGTGTATGGTATTGATATGTCCTCCATCATTGATCACGCTAAAGA
AATTGTTAAACAAAATGGATTTGAAAAAGATATCACACTTATCAAAGGAA
AGGTTGAAGAGGTAACGTTACCAGTAGAAAAAGTTGATATCATCATCAGT
GAATGGATGGGATATTGTTTGTTATATGAATCCATGTTGGACACTGTCAT
CTACGCTCGTGATAAATGGCTCAAACCTGATGGTCTCATGTTTCCAGACA
AAGCATCGATGTGGATAACAGCTATTGAAGACCGTGATTATAAAGAAGAA
AAGATCAACTGGTGGGATAATGTTTATGGATTCGACATGAGCCATATTCG
TAACGTAGCGTTAAACGAACCCATCGTTGATGTTGTTGAACATAGACAAA
TAGCAACTGATGCCTGTCGCTTCAAGGACCTCGACCTTTTAACATGCAAA
GTTGAAGATTTAGCGTTCACAGCTCCCTTCAAGATAGCAGCACGTCGGGA
TGACTACCTTCACGCTTTTGTTGTCTACTTCAATGTCGAATTTGCTCCTT
GTCATAAATTCACTGGATTCTCAACAGGTCCCGAAGCAAGATACACTCAT
TGGAAGCAGACGGTGTTTTACATCAACGAACCGATTACAGCAAAACGTGG
TGAAGTTGTGACCGGTGAATTTATTATAAAACCTAACGATCGAAACAATG
TAAGTCTTTCGActtttttaactcgaacaatcCGCCCTTTTTACTGGTTG
GTTTTATTGGTGGTTTTAGGTTGGGAAAGTAGATTAAATT

Run BLAST on NCBI

transcript from alignment at sc0000460:48739..55944+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023711 ID=TCONS_00023711|Name=TCONS_00023711|organism=Clytia hemisphaerica|type=transcript|length=7206bp|location=Sequence derived from alignment at sc0000460:48739..55944+ (Clytia hemisphaerica)
CAATCCCGCGTTTTGTGACTGTGGTCACGCGGGTCGAAGGAAATTTCTTT
CccacatttttaattttcacttcAAGCACGTGGAACGCGAATGGCTGACA
GTCCTCAAGCAAAGTcaagaaaacttgaaaatcaAGACCAAATGGTAATA
TCTTACTCTAATTTTTATATTGTGTATAACTAATATGAGGCAAGGTGGTT
GGTgtcttgaaaatttataatagaATCCCTAAAAATAGCATAAATTATGC
TTTCATTCTGTCTTTTTTAACCATGGCAACTTTTCTGATAGTTTCTGGCA
AGAGGTGCCAACCAACCTACAATGTGTAATCAAACAGCTTTGAGGAAGTC
TTATCTATCCTAGTACAATATTAGTGATTGGTACATTTTGAAACAAACAG
TTTTGGCAGATTTTTGAAAGGCCATTTAAGGTTTATAAAAGAGGCTTGGT
TGTTGACCCAAAAATTGGGTTGGTTGATCAGTTCACAGTTTGGGTAAGAA
AAAGGTCCTGTATGTTTATTTGGGCTTTTCAAACTGTTTAATACTAAAAA
ctgtgaaattaaattcccgcaaaacTTCCGAATTCAGTTCGGGAAATTGc
atatccagacgatctcaatcgaatggaatcgacgatcaaaccagtcgaac
acaatcaaatctcaatcgaatattaccgcaattttctgatattcgattga
tattcgattgatgttccattgatgttcgattgcattcgattgcgttcgat
cgtcgattcattgacccccggattgttcatcgcacaATTTCtatgggaaa
tcgaaagtaattgcattcggcttgtgatgtttgagagcttggatgttggg
aagctgcaagaataaagccagacaatctcaatggAACAGattcgacgatc
gaaccagtcgaacaacaatcgaatattacccagaattgacgttcgattga
gattcaattgcgtttgacaatcgaatttcaatcggtcgattgcgttcgat
ttggttccactggttcgatcgtcgattctgttcgattgagatcgtctggc
atATAGATCCGCAACGTTGCAAAATTCCGCAATGTTGCATTTTTTGCAAC
ACTTCCCTTAGCGTGCGCTGCAATTTTTCGCAACGTTCCCAATGGAAGTG
TGCGATTATGAACACCAACTATGACGACCAATTTTACCAATTCAAATAGA
AGCAAAATCTGGCATATTTGAACAAAGTATATAGCATTTCTTCTAAGAAT
GATTGTGAATAATCGCtaggtaggaaattaaaatgctagggtgaaaagtt
tccttttgggCCAGTGTGAAAACGATGCAAAGTCCACGCCGAATTGTTAT
TTCATTAAACTGAGGTGCGCGCCAAAAGACGTTCTGCTTGCGAGCCCTGA
CATATTTGATCTTCTCATGCctaaaagttgctcaaaatttgtataaaaag
agccaaagttgctcaaaatttgtataaaaagaGCTGGAATTGCTGGTACT
TCTAAGAAAGAAATGTATAGTTAAATATGAAAGTTAAATGAATCATGACC
ATGAGCCATATTTTAGGAATCCAAAGTGAGTTGCTTTATCAATTCAAATA
ATTTGTACACCTATTTCTTAAGTATCTTTAtcaataattgttttgtttca
ttAAATACGAAATGAAAACAGATAAAGAAAAAGGTGGATGCGTTTGAACC
TGGCGTAATGAAATCAGGCGTTAGAATGGCGGTGCTCATCTCgtcttgaa
aagctttgacttTTACTGCCTCACTCCAAATATATTTGGCGCAATGTACA
CTAATTCCAGGCTGGCTTTTGAGTTGTTTTACAAAATGCACATTATTTTG
GGACCCTGGTCCAGGGACCCTGGTCCAGATCCTGCGACCCCGAATCAGTA
AAGCTGCAGAATATGACAatgcaaaaaatgcaaaatttcgtaACTTTGCA
GATCTATGCAATTTCCCGAACTGAATTTTGATAGGTgaaccacgaaatta
aattctgcggaAATTtgttctgtgaaaatttcttcctataAGGTCAAGTC
TGTGTCAATTTTTACCATAACTTTACAAGCATTTGTCCTGATTTGTCGTA
CAATAATGTTTGGTATTGTGCAGTCATGGAAATCCTCTTAATTGCGCGCT
TAACTTCCGGGACTTAAACGTGCAATTACACTGCTATCAAAATTGTAGAA
TTTTTAAGGGTGCAATTACATGCTTATCACTATTTGAATGGGTGCTAAGC
ATGTAATTGTACATAGGGTCAGCCCAGGTCTAGGTCCCAGGCATAAaaat
aggtccccccaaatattaaaagttttttaagcagCCCCCAGTCTTagtat
aaaatatttgttgatttcttaatattatttttaggaaaatcacaTCTATT
CTTTTTCCATTCTTGAAATCTTAATGGTTTTTAAGATGTAAAAAGGCCTT
TATTTCGTGGGTGAAAATGCCTATAATGTGCAGTAGCATGGTgcgaagat
tttgattttgacgcccactatgaaaagtaaaaatctcTTTAAAAATAACG
CAGGCAGACGCAGGCGaggaaaacacaaaatttttgggtgttttgtctct
tttttggccaaaaactgCCATATCAAGTAATCAGTGGCATCTTTTTGCGA
TCAgggcccccctgccaccacgctattGTCATTATACATATTAATTTAGA
ACCCTAGAAGATAttgtgcttttgctgaaaagtgtgccgatgttaggtag
gaaatccttcctaAGTCACATGACACACAATAAAATTTcagtgcttgacc
aatcagaagcattgtgggttttcgaaaacaatagcagcgatattcacttt
tttgcttggaagaggtTAAAGCATGCCATCTAGCTCTTctggctttataa
atctatgggtgTAACCCCCCAAAAAAGTCAGGGGGTTGGCGCTGTGTTGC
TTCCTTAACTAGTTTAtcatttaaaaaactttatttgctTCCGATCGCTT
TGTTGAAATCGGAAAGCCTTGGATtattactcaaaatttatcctAGAAAG
CCATTGTGTTCAACTTTTGCCTGTTTGATCATGTATCATGAACCCTCTAA
TCTGCTCAAGCAATCTCAACCGGGGCGGGatcataagcgtgcaattgcac
acAGGCGTAAATTTAACTGTGTAATTGCAGGCTTACAGCCTTGGGAGTCA
AACGTGCAAAAGAGGATTCTTCAGACTGTTGGGCTATCCCATTTTGAAat
catacaggggtattgactaacttttccagggggtttgaaccttcattttc
caaggttgttcatttttcagattttcaaaggGGGCtattaaaggtttcca
gggggttctctcCTCCTAAACTGACATCAATAGTCATTTTCCaagccctt
tttcacaaaatttcactttccaggggtgtcaacccctaatttccagggat
agtttgttatccaaaatttttaaaggcaaaaaaagttatcaatacccctg
tacaatttttttttggaatagcccataGTTGGACATTTATATTTTTTCCa
ctaattttagcaaaaattaaattttgcagtTGTGAAGTTATAAGATTTCA
CGAGACTTAATTTCGTGGATGGCATTATACagagacaatattttcatgat
TCTGATGCAATCTGAAATGGGGAAATCTGCAAATTTTAATCcctgcgaaa
atttatcccattaaagtaatttgtttttcaaaattcactcTGATTCACTc
tagaaagtgaagaaaaagatggaacttcttgtagaataacCCTATAACTA
CCATTTTCTCAACAATGAAACTTCAATCTTATGTCAGaaatactgaaaaa
aaattcaaaaataataattctGTCTAAAGATGTTGAACAAAGTGTTCAAC
TGGTTGACCCCTAAAATGCATGtgtttttttattgcttttgaTTGCCCAA
ACCATTTTactgataaattttttttaaaaaacttaagGAACTTAAGGATT
TGCACTGCAAAAATTAAGTTGATTTAAAATTTGTAGCACAACCAGTAATC
GTTACTATTTTCACAGAAAGTCGAAATGGCAGCAGCAgtctcaacaacaa
caacaaacggCCATATTAATGGTGATGTCCTCAAAAAGAAATGCCCTCCC
TCTGATGAGAAACCTGCAGTCAATGACATGACAAGCAAGGATTATTATTT
CGACTCATATGCTCACTTTGGTATCCATGAAGAAATGTTGAAAGATGAAG
TACGCACACTCACTTATCGAAATTCTATGTACAATAACAGACATCTCTTC
AAGGGAAAGGTTGTTCTTGATGTTGGTTGTGGGACTGGCATTTTGAGTAT
GTTTGCAAAAAAAGCAGGCGCAAAACATGTGTATGGTATTGATATGTCCT
CCATCATTGATCACGCTAAAGAAATTGTTAAACAAAATGGATTTGAAAAA
GGTAAggctttgtttatttttaaagcAGCAGTGTATCTCAAAGTAGTCTA
AagagaaaaaatagaaagatttcctttttttaaataatgccCCAATGTTT
GAAcgtccatttttttcaaaagcctGTTAAAATTGTTTTAGATATCACAC
TTATCAAAGGAAAGGTTGAAGAGGTAACGTTACCAGTAGAAAAAGTTGAT
ATCATCATCAGTGAATGGATGGGATATTGTTTGTTATATGAATCCATGTT
GGACACTGTCATCTACGCTCGTGATAAATGGCTCAAACCTGATGGTCTCA
TGTTTCCAGACAAAGCATCGATGTGGATAACAGCTATTGAAGACCGTGAT
TATAAAGAAGAAAAGATCAACTGGTGGGATAATGTTTATGGATTCGACAT
GAGCCATATTCGTAACGTAGCGTTAAACGAACCCATCGTTGATGTTGTTG
AACATAGACAAATAGCAACTGATGCCTGTCGCTTCAAGGTAATTTAACAT
ACATTATGATTACGTTTTGGCATAATGACGAAAAGAATTTCTTCACCTGA
ATTTTTAAGGTTGATACTGACATTCTGAATGCAAAACAGACTTTCTTATG
CAGCTTCATATTTTTAATTATTAGATTAATTAAGGAATCTTATGCATGAT
GATGAAAAGAATTTCTTCACCTGAATTTCTAAGGTTGATACTGACATTCT
GAATGCAAAACAAACTGTTTCCGTACACCATTATTTATTAACCATCCCAA
TTTACTTTTTAGGGAAGAATGTGCaagtatttttaaaattaattagaTTT
TTTACTGCATAACGATGAAAAGAATTTCTTCACCTGAATTTCAAGGTTGA
TAACGACATTCTGAATGCAACAAAAGTCCTcagttttttctgtttattCA
GACTGGTCTGTTCTCTTCTGTATTGGTTGCAGTGAAATAATTTAAAGTTG
AATTGTGATGAAAAGAATGAATTTCTTCACCTGAATTTCAAGGTTGATAA
CGACATTCTGAATGCAACAAAAGTCCTcagttttttctgtttattCAGAC
TGGTCTGTTCTCTTCTGTATTGGTTGCAGTGAAATAATTTAAAGTTGAAT
TGTGATGAAAAGAATGAATTTCTTCACCTGAAGTTTTACCCAGGTTGAAA
TCTGACATTCTGAATTCGAAAGTCAATTATATTGATACCAAATTGAAACA
ATTAGATGAACTACTTGATTTATGTGTTTCTTATTTCTCATATTTCAGGA
CCTCGACCTTTTAACATGCAAAGTTGAAGATTTAGCGTTCACAGCTCCCT
TCAAGATAGCAGCACGTCGGGATGACTACCTTCACGCTTTTGTTGTCTAC
TTCAATGTCGAATTTGCTCCTTGTCATAAATTCACTGGATTCTCAACAGG
TGATTACATGATTACATCATTCTATCTTGACTAAAGTGTCTGCAACTGTA
GACTAAACTTGGCTTTTGGTTATCCTTTTTTAAGATTCTTCTTGGCATTG
TTTTACTTAATCATAGCAGCGCAAACTTCTCAACCAGACCAGCCCTAAAT
TCTGCTTATTCCTTGTGTTACCGCTGCAACGTTTCCTCTCGATTTTAATA
TTGTTACTGTTTGACggtttattaaattttaaaaatatgaaattctcCTT
CCTAGGTCCCGAAGCAAGATACACTCATTGGAAGCAGACGGTGTTTTACA
TCAACGAACCGATTACAGCAAAACGTGGTGAAGTTGTGACCGGTGAATTT
ATTATAAAACCTAACGATCGAAACAATGTAAGTCTTTCGActtttttaac
tcgaacaatcCGCCCTTTTTACTGGTTGGTTTTATTGGTGGTTTTAGGTT
GGGAAAGTagattaaatttttaaaaattggaaaattggaagATATCGAAA
TTCAACGAATCTTTTCGATACACCAGCCGAATTCAAGAAATTCTAATTGT
GTCTAACTACGAAGCTGCATAATGATGAAAAGAATTTCTTCACCTGAAGC
ATATACTCGATATGTGCCACAAGATGAAAATGACAATCTGAATGCACACC
TTGTCACATCTTGATAGAATTAGCTGATTTCCTATTGCTATTCGCAATCT
CGCTGATTCAACCAATATTTCAATCTAAATGTTTGCACCTTTTGTTTCAG
CGCGACTTGGATCTTGAGATCACCCATGAATTCACAGGAGAGTTAATGAC
GACCAAAGATCATCACACGTACAAAATGAGATAAGGAGCGAACCAGAAGA
GAGTTGTAGAGTAAAACTGGCTTCCATTTTAGCCCTTACATACCGACACG
TGAAAACCGACACCTTGTTCATCAAGCCCTTCTCTGGTATCAATTCTGAT
CAGAAGACTTGGTAGTGTCATTTTCTATAGCAACTAGACTGNCTGGCATT
GTTTTACTTAATCATAGCAGCGCAACCCCAGCCCTAAATTCTGCTATTCC
TGGTGTTACCGCTGCAACGTTTCCTCTCGATTTTAATATTGTTACTGTTT
GACggtttattaaattttaaaaatatgaaattctcCTTCCTAGGTCCCGA
AGCAAGATACACTCATTGGAAGCAGACGGTGTTTTACATCAACGAACCGA
TTACAGCAAAACGTGGTGAAGTTGTGACCGGTGAATTTATTATAAAACCT
AACGATCGAAACAATGTAAGTCTTTCGActtttttaactcgaacaatcCG
CCCTTTTTACTGGTTGGTTTTATTGGTGGTTTTAGGTTGGGAAAGTAGAT
TAAATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013321	XLOC_013321	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000460	supercontig	sc0000460:48739..55944 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.000448854	0	0.000683666	0.000877476	0	0	0	0	0	0	0.00037551	0	0	0.000421863	0	0	0	0	0	0.000566663	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00023711 vs. Swiss-Prot (Human)
Match: ANM1 (Protein arginine N-methyltransferase 1 OS=Homo sapiens GN=PRMT1 PE=1 SV=2)

HSP 1 Score: 454.136 bits (1167), Expect = 6.920e-158
Identity = 211/310 (68.06%), Postives = 256/310 (82.58%), Query Frame = 1

Query:  229 SDEKPAVNDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYNNRHLFKGKVVLDVGCGTGILSMFAKKAGAKHVYGIDMSSIIDHAKEIVKQNGFEKDITLIKGKVEEVTLPVEKVDIIISEWMGYCLLYESMLDTVIYARDKWLKPDGLMFPDKASMWITAIEDRDYKEEKINWWDNVYGFDMSHIRNVALNEPIVDVVEHRQIATDACRFKDLDLLTCKVEDLAFTAPFKIAARRDDYLHAFVVYFNVEFAPCHKFTGFSTGPEARYTHWKQTVFYINEPITAKRGEVVTGEFIIKPNDRNNVSL 1158
            S EKP   DMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSM++NRHLFK KVVLDVG GTGIL MFA KAGA+ V GI+ SSI D+A +IVK N  +  +T+IKGKVEEV LPVEKVDIIISEWMGYCL YESML+TV+YARDKWL PDGL+FPD+A++++TAIEDR YK+ KI+WW+NVYGFDMS I++VA+ EP+VDVV+ +Q+ T+AC  K++D+ T KVEDL FT+PF +  +R+DY+HA V YFN+EF  CHK TGFST PE+ YTHWKQTVFY+ + +T K GE + G   ++PN +NN  L
Sbjct:   28 SSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDL 337

The following BLAST results are available for this feature:

BLAST of TCONS_00023711 vs. Swiss-Prot (Human)

BLAST of TCONS_00023711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ANM1	6.920e-158	68.06	Protein arginine N-methyltransferase 1 OS=Homo sap...	[more]

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TCONS_00023711 (transcript) - C. hemisphaerica