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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023717 ID=TCONS_00023717|Name=TCONS_00023717|organism=Clytia hemisphaerica|type=transcript|length=2467bpRun BLAST on NCBI protein sequence of TCONS_00023717-protein >TCONS_00023717-protein ID=TCONS_00023717-protein|Name=TCONS_00023717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp FILNTAEKNYKNMSSTEKTQTLQDNVDLTGQQPIYSQKVFEKTIEVHNLDRun BLAST on NCBI transcript from alignment at sc0000460:180515..198698+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023717 ID=TCONS_00023717|Name=TCONS_00023717|organism=Clytia hemisphaerica|type=transcript|length=18184bp|location=Sequence derived from alignment at sc0000460:180515..198698+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000460:180515..198698+ >TCONS_00023717 ID=TCONS_00023717|Name=TCONS_00023717|organism=Clytia hemisphaerica|type=CDS|length=11460bp|location=Sequence derived from alignment at sc0000460:180515..198698+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023717 vs. Swiss-Prot (Human)
Match: BCD1 (Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 8.258e-33 Identity = 86/260 (33.08%), Postives = 141/260 (54.23%), Query Frame = 2
Query: 158 DVTMNSPIKESPPCSSKTIIDRRL--RKCEICLEELCKYTCPGCKIKTCCLSCVEKHKKMTGCIGRRDKTAFVAKSQFNNFHLLNDYRFLEEAGRLSDNAKRD-YKVRPTLKPQKKEQILTRNASKSGVNLYRMAKGMKRWKENRSYYNIKEQTLFWTMKLIFDGIKEPILTKQA-ETLTFKELLSKYIGEEQGLDVNKEKYLKHMIHFKNKALKVFFKQEIDPGSENL-RFAEMNIEGTIKDGLQSKSILEYPVFYLVL 922
++ ++ +KE PP + R+L +CE C E KY CP C +C L CV+KHK C G RDKTA+++ QF +LL+DYRFLE+ R +D+ RD + RP K + A + G+NL + G + KEN ++++ K+Q W +KL F + + K+ + T E+L YI E+ V +++ LK I + +++ K I+ +NL R+ E++ ++ D L++K I+EYP ++VL
Sbjct: 192 EIVDDTKVKEEPPINHPVGCKRKLAMSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPI--SNKYMYFMKNRARRQGINLKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYIDPEKSDPVIRQR-LKAYIRSQT-GVQILMK--IEYMQQNLVRYYELDPYKSLLDNLRNKVIIEYPTLHVVL 445 The following BLAST results are available for this feature:
BLAST of TCONS_00023717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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