TCONS_00023741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023741
Unique NameTCONS_00023741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023741 ID=TCONS_00023741|Name=TCONS_00023741|organism=Clytia hemisphaerica|type=transcript|length=362bp
CCTCTTTTTAGCTTCTGCTTGAACAGCTCATCCAACTCGTTGAGTCCGAT
GCTTCAACATTTCCTTGAGGCTGTTGGAGTCAGCTTGCCTAAGGTTAAAA
TAGTGGGCAAGCAGAGGTTCATCCGGAACAGTTGTGAGGAAGGTGTCTAA
gtgttttttgaatacttctttggtgcagtttgtcaaatctcttattggtc
tgggaagggtgttgaataatcgagggccttcttgggaaagacttcccctc
cagatatttttgtgtttgataTTGACAGCTTTTAGATTGCAAATTCTCCC
CAATCTCTGATGTTATATGGCAGGAAATGCCTCCTTTACTTCCGTCATAA
TCAAAATTTGGG
Run BLAST on NCBI

transcript from alignment at sc0000460:109301..109662

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023741 ID=TCONS_00023741|Name=TCONS_00023741|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at sc0000460:109301..109662 (Clytia hemisphaerica)
CCCAAATTTTGATTATGACGGAAGTAAAGGAGGCATTTCCTGCCATATAA
CATCAGAGATTGGGGAGAATTTGCAATCTAAAAGCTGTCAAtatcaaaca
caaaaatatctggaggggaagtctttcccaagaaggccctcgattattca
acacccttcccagaccaataagagatttgacaaactgcaccaaagaagta
ttcaaaaaacacTTAGACACCTTCCTCACAACTGTTCCGGATGAACCTCT
GCTTGCCCACTATTTTAACCTTAGGCAAGCTGACTCCAACAGCCTCAAGG
AAATGTTGAAGCATCGGACTCAACGAGTTGGATGAGCTGTTCAAGCAGAA
GCTAAAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013336XLOC_013336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023741-exon-sc0000460-1491911889:109301..109662TCONS_00023741-exon-sc0000460-1491911889:109301..109662Clytia hemisphaericaexon
TCONS_00023741-exon-sc0000460-1510915933:109301..109662TCONS_00023741-exon-sc0000460-1510915933:109301..109662Clytia hemisphaericaexon
TCONS_00023741-exon-sc0000460-1575043694:109301..109662TCONS_00023741-exon-sc0000460-1575043694:109301..109662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000460supercontigsc0000460:109301..109662 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25143	1.01164	2.60973	3.66897	2.03184	1.50467	1.44099	0	3.09546	2.66876	2.24885	1.5164	1.26215	1.90336	0.584209	1.82959	0.509785	1.1884	3.06146	1.26961	0.654795	1.59341	0	1.49715	0.827789	1.52916	1.53257	1.22099	1.54572	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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