TCONS_00023745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023745
Unique NameTCONS_00023745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023745 ID=TCONS_00023745|Name=TCONS_00023745|organism=Clytia hemisphaerica|type=transcript|length=377bp
GGGAGGAGTTGGGAGAAGAGCGCAACCTGTTTGGGTTTTCGGGTTAGTGG
ATACGCGTTTCACTCCAGCCAAAGGATACATGGAAATAGTCAACCGCCGA
AACCGACCAACTCTAACTGGGATTATTAATAATGTTATAAACCCAAACAC
TGTCATCCATAGCGACCAGTGGCGAGCTTACAATCGATTGCTACAGTTTG
TCCCAAACTGTATACAGCACGACACTGTCAACCACACCTACCACTTTGTG
GATCCTCAAACTGGTGCACACACACAACATATCGAATCATATTGGAACAG
ATTCAAGTTGAAGCTAAAAGCAATGAAGGGAATCAAGCTCCAATTCCTTA
CAAGCTACATGGAGGAATTTATGTGGA
Run BLAST on NCBI

protein sequence of TCONS_00023745-protein

>TCONS_00023745-protein ID=TCONS_00023745-protein|Name=TCONS_00023745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
GGVGRRAQPVWVFGLVDTRFTPAKGYMEIVNRRNRPTLTGIINNVINPNT
VIHSDQWRAYNRLLQFVPNCIQHDTVNHTYHFVDPQTGAHTQHIESYWNR
FKLKLKAMKGIKLQFLTSYMEEFMW
Run BLAST on NCBI

transcript from alignment at sc0000461:46172..46894+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023745 ID=TCONS_00023745|Name=TCONS_00023745|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at sc0000461:46172..46894+ (Clytia hemisphaerica)
GGGAGGAGTTGGGAGAAGAGCGCAACCTGTTTGGGTTTTCGGGTTAGTGG
ATACGCGTTTCACTCCAGCCAAAGGATACATGGAAATAGTCAACCGCCGA
AACCGACCAACTCTAACTGGGATTATTAATAATGTTATAAACCCAAACAC
TGTCATCCATAGCGACCAGTGGCGAGCTTACAATCGATTGCTACAGTTTG
TCCCAAACTGTATACAGCACGACACTGTCAACCACACCTACCACTTTGTG
GATCCTCAAACTGGTGCACACACACAAGTAAGACCATGTACCTAacctaa
attttcaaaaccaaatCAATAAATTCTTCAAATAATAAGGCTCGACTTTT
TTAGAAGCTAtgggtaccttatcggggaaaacttcgtcaggGAAGGGTGA
CAAagttttggccaagtgacgaatatttttccccgacgaaaattttcccc
ggtcttaatgcgtttaccaactaccagcaagtgacgaatatttttccccg
acaaaaattttctctgataaGGTAGTTGTTACTAGCTATTTTAGGTCATT
CCGTACTGTCGCTTTTCTGGAGATTTAAAAGCTGAATAAAATTCTAACTC
AAATCTTATGAACTCGCTTTCAGCATATCGAATCATATTGGAACAGATTC
AAGTTGAAGCTAAAAGCAATGAAGGGAATCAAGCTCCAATTCCTTACAAG
CTACATGGAGGAATTTATGTGGA

Coding sequence (CDS) from alignment at sc0000461:46172..46894+

>TCONS_00023745 ID=TCONS_00023745|Name=TCONS_00023745|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000461:46172..46894+ (Clytia hemisphaerica)
GGAGGAGTTGGGAGAAGAGCGCAACCTGTTTGGGTTTTCGGGTTAGTGGA
TACGCGTTTCACTCCAGCCAAAGGATACATGGAAATAGTCAACCGCCGAA
ACCGACCAACTCTAACTGGGATTATTAATAATGTTATAAACCCAAACACT
GTCATCCATAGCGACCAGTGGCGAGCTTACAATCGATTGCTACAGTTTGT
CCCAAACTGTATACAGCACGACACTGTCAACCACACCTACCACTTTGTGG
ATCCTCAAACTGGTGCACACACACAACATATCGAATCATATTGGAACAGA
TTCAAGTTGAAGCTAAAAGCAATGAAGGGAATCAAGCTCCAATTCCTTAC
AAGCTACATGGAGGAATTTATGTGGGGAGGAGTTGGGAGAAGAGCGCAAC
CTGTTTGGGTTTTCGGGTTAGTGGATACGCGTTTCACTCCAGCCAAAGGA
TACATGGAAATAGTCAACCGCCGAAACCGACCAACTCTAACTGGGATTAT
TAATAATGTTATAAACCCAAACACTGTCATCCATAGCGACCAGTGGCGAG
CTTACAATCGATTGCTACAGTTTGTCCCAAACTGTATACAGCACGACACT
GTCAACCACACCTACCACTTTGTGGATCCTCAAACTGGTGCACACACACA
ACATATCGAATCATATTGGAACAGATTCAAGTTGAAGCTAAAAGCAATGA
AGGGAATCAAGCTCCAATTCCTTACAAGCTACATGGAGGAATTTATGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013340XLOC_013340Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023745-proteinTCONS_00023745-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023745-exon-sc0000461-1491911889:46172..46448TCONS_00023745-exon-sc0000461-1491911889:46172..46448Clytia hemisphaericaexon
TCONS_00023745-exon-sc0000461-1510915933:46172..46448TCONS_00023745-exon-sc0000461-1510915933:46172..46448Clytia hemisphaericaexon
TCONS_00023745-exon-sc0000461-1575043694:46172..46448TCONS_00023745-exon-sc0000461-1575043694:46172..46448Clytia hemisphaericaexon
TCONS_00023745-exon-sc0000461-1491911889:46795..46894TCONS_00023745-exon-sc0000461-1491911889:46795..46894Clytia hemisphaericaexon
TCONS_00023745-exon-sc0000461-1510915933:46795..46894TCONS_00023745-exon-sc0000461-1510915933:46795..46894Clytia hemisphaericaexon
TCONS_00023745-exon-sc0000461-1575043694:46795..46894TCONS_00023745-exon-sc0000461-1575043694:46795..46894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000461supercontigsc0000461:46172..46894 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.675121	0.651603	0.508353	0	0	0.748827	0.421928	0.321022	0.437567	0	0.128685	0	0	0	0	0	0	0	0	2.94751	1.01176	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024445Tnp_ISXO2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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