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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023758 ID=TCONS_00023758|Name=TCONS_00023758|organism=Clytia hemisphaerica|type=transcript|length=3275bp
accaggctctatccaatctataaatcaaaacaaacttatcgagaacaaaa
acattgcttgcgaaaacgaaagtgacacacagacaaaATGATATATACAG
TACGgttattaatatatagatgttGAGAAAAAGTATTGTTAaaactacaa
aaaaaaacaagtttaacAAAAAACAATTACATCCAGTTAAAAGACTTTAA
AAGATTTCAAGTGCGTTCTAAAAGATCCTCGGCTTTCGTTATGTATTATA
CCGTTAAGCTTTCCAATTCCTCTGATCTTTTGTTTTGAGACATGTTCACC
TCCTCGCCATAATCTTTGTGTCCTCTTCGACGTCTGAAAAAGATAGCCAA
CCCAACCAATCCAATCAAAACTAATATCGCCAACACCACCATTAAGATGA
TGAAACCAGTATCTGGAATTGATAATTGACATTGTTGACCATGATAACCT
TCGTTGCATTGGCATGTATATCCCATTGAAATGTTACTTCTCTGACAAAT
TCCATGATTCTGACAGGGGTTATCAAAATAgcaaatatctttcatttgac
aGCGCTCACCAGAATATCCTACACGACAATCGCATTTATATCCCATTGAA
ATGTTACTTTTCTTACAATTTCCATCATTCTGACAGGGGTTATCAAGATA
gcaaatatctttcatttgacaGCGCTCACCAGAATATCCTACACGACAAT
CgcatttgaatgtattttggATTGGCACACATATACTATTGGTTATATCT
TGGCATGGTTTCAATCTCAGGTTAAATGAACAGGCGTTTTCGAATTGACA
AAATTCTCCATGATTATTTCGACTGCAGGAACAATTGTAATTGAATTGGT
CAGCAACTTGACATGTTGCATCGTTTTGGCATTCGTTGACAGAGCAGGAA
CTAcaatttaatttgttcttgCGGTAGAAATCATACAATTCAATACCATT
GCATTTACCATAAACTGTTCCATCATGGTAACTTTCACAATAAGTAATTG
TATCATACATAACACAATCGCATATCAATGGGTTGTTCTCGAGTTCCAAT
ATCTCAGGAACAGCTGAACCAAACCAATCTCTTCGTGCTGTTGTTATCTT
attgaactgcaagtatatccAACTCAGAGACGGAAGATCACCAAAGACTC
CAGTTTCAACAGTCGTTATATCATTACGAGCTAAGAATAATTGTCGTAAC
TTAGCTAATCCGGTAAACGTACCCTTTCGTAAAGTCGTCAATTTATTACC
TTCTGCGTACAGATGTTCAAGTTGTGAAAGATCCTGAAAAACACGAGGTT
CCAAATTTTCAATACCATTTCTTTGAAGGAATATAGATATGATAGAATCA
TACCCTTCGAAgtctttttgtttaattttattaatattattgtCTTCTAG
ATCGAGGATAGTGATGCTTGGTATATAAAGTGATATGTTTGCAGGCAATC
TGGTCAGTTGGTTTTCGTTCAACGTGATTCGATCAAGTTTagtgaaatta
acaaaaagttcaGCTTGAAATTCGGTGATTAGGTTTCTGTTGAGAAATAA
ATGCACAGTTTTTTTTGTATCCGATTGTGATGCAATATCCTGAAGATCTT
TGTTGGTGATATTTTGGTTCATACAATACACATTGACAGCACTATAATCT
ATTTCCCAAGAACACTCACATTTTGTTGGACAAGTTGTTGAACGCGATGC
AAAACTGGAAACAATGCAAGCCAATAAAATAAGAAGATGGTGGAATAGca
tattcataattttgatCGTCAATTATTTTTCTTCAGGTTTTTTCCTGAAA
ATGAGAATAAAGTGATTTTATAGTTTGTGTTATACACATATTAATTATTA
ACAGCTTATTTTGGCATGAAATTCAAACCAGGCAGCTGTATGAAATATAG
GCATTATGCTGAAGGTTATTTTTTATATCTAGCCGTAGCTATTTAATTAG
AGAGAGTTTAATTTTAATAGGTAATTAGAGATTATGAACTTGGGAAACTG
TagtaaaaatctataaaaagcaCATTTTATTGCTCTCTATTTAATTCTGA
ATCCCCGGACAGTTTTGTTAGCTTCGGCTAATAAGTGGATGTTCTACCGA
GATCTTTAATGGGTCTCGGACCGTTGTGCTGTTCTGGGTAGCCGAGAGTT
ACATAAAGAGAACTTAAGTTTATAAATGGAAGACCGACACCTTCAAAAGT
AGTCAGAATTTAATTGATGGGAATTTAATTAATGGAATTGTCATGAGCAA
GACTATAACATGCTCCCTTGAGCAAGGGCATCACCATGTAGCTCCCCGCG
TCAGGGTCACGACGAAGTATATGAATCATAGAGAATGATACAAGAATCAG
TTTTACCGCTGAAATTAACAGAAAAGGAATATATGTTAAGGAAACTGGTG
TCAAAGAAAAATCTCCAGCGAATCAGTTATATATGTAAAACTTGAAGGCA
GCTTCAGGAGAAGCCAATTGTCGTTTCCACGGAAACAAATACAAATGAAA
CAATTATAGTTAATGCAGAAAGAGATGATTTGAGAAATGTAAAGCAGAAT
CTTTTCAGAATATGGTCCCAGTAGGTGCTTTATGGAGAAATGTTCACTTT
TAGAGAACGTCTTCTGTGCAAGTTTGTCTTCTCTCCACTCGTATGCTGCT
GAAACGTGTCCGGCCAGTCCTAGCTCAGGAATCGATTGTAGAACAGGTAA
TAATTTCATCAATTGAAAATCATGATTATCATGCTTGAGCTGATAGTAGA
GGATTAGTGTTGTTGTGTATATACTGGTGTACAATAAGCTGCTGGCATTG
GCGGAACATACTTGATACCAGTTTTTTGGGTTCTTTCCCGGCCTCTAGCT
TTATTACTGTTCCAAAGTCTGATTCAGTGTTTTTCGGTGAAACATTTTCG
GTGCCATTGTTCGAAGCTGTTTCATTGTGATTGTCTTTTATTGtcgtttt
gtttttaatgtttgtTTTGGCATTCACGATAGCAATGCCAAAAGTGATGA
AGATTAAAAACTTCTGCATTCTTGttgtaatttattttcaatatttgtgC
CTCCTGCATAAGTTTCTCTTATGAAGAATTCGTTTGTACAGTTTTCTATT
CTTTTTCGTTTCGGGATGGCTGCCATTCAAATGCATGTGAATAGATGTAA
CATTTCGTCATTCATATTATCATTAATGATTTACGATTGATGGCgttttc
catataaggtaattacattcattttgttttaaagtttttccagTATTGTT
CAATTATCTCTTTAGGAATAATCTC Run BLAST on NCBI transcript from alignment at sc0000461:89762..93036- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023758 ID=TCONS_00023758|Name=TCONS_00023758|organism=Clytia hemisphaerica|type=transcript|length=3275bp|location=Sequence derived from alignment at sc0000461:89762..93036- (Clytia hemisphaerica)
ACCAGGCTCTATCCAATCTATAAATCAAAACAAACTTATCGAGAACAAAA
ACATTGCTTGCGAAAACGAAAGTGACACACAGACAAAATGATATATACAG
TACGGTTATTAATATATAGATGTTGAGAAAAAGTATTGTTAAAACTACAA
AAAAAAACAAGTTTAACAAAAAACAATTACATCCAGTTAAAAGACTTTAA
AAGATTTCAAGTGCGTTCTAAAAGATCCTCGGCTTTCGTTATGTATTATA
CCGTTAAGCTTTCCAATTCCTCTGATCTTTTGTTTTGAGACATGTTCACC
TCCTCGCCATAATCTTTGTGTCCTCTTCGACGTCTGAAAAAGATAGCCAA
CCCAACCAATCCAATCAAAACTAATATCGCCAACACCACCATTAAGATGA
TGAAACCAGTATCTGGAATTGATAATTGACATTGTTGACCATGATAACCT
TCGTTGCATTGGCATGTATATCCCATTGAAATGTTACTTCTCTGACAAAT
TCCATGATTCTGACAGGGGTTATCAAAATAGCAAATATCTTTCATTTGAC
AGCGCTCACCAGAATATCCTACACGACAATCGCATTTATATCCCATTGAA
ATGTTACTTTTCTTACAATTTCCATCATTCTGACAGGGGTTATCAAGATA
GCAAATATCTTTCATTTGACAGCGCTCACCAGAATATCCTACACGACAAT
CGCATTTGAATGTATTTTGGATTGGCACACATATACTATTGGTTATATCT
TGGCATGGTTTCAATCTCAGGTTAAATGAACAGGCGTTTTCGAATTGACA
AAATTCTCCATGATTATTTCGACTGCAGGAACAATTGTAATTGAATTGGT
CAGCAACTTGACATGTTGCATCGTTTTGGCATTCGTTGACAGAGCAGGAA
CTACAATTTAATTTGTTCTTGCGGTAGAAATCATACAATTCAATACCATT
GCATTTACCATAAACTGTTCCATCATGGTAACTTTCACAATAAGTAATTG
TATCATACATAACACAATCGCATATCAATGGGTTGTTCTCGAGTTCCAAT
ATCTCAGGAACAGCTGAACCAAACCAATCTCTTCGTGCTGTTGTTATCTT
ATTGAACTGCAAGTATATCCAACTCAGAGACGGAAGATCACCAAAGACTC
CAGTTTCAACAGTCGTTATATCATTACGAGCTAAGAATAATTGTCGTAAC
TTAGCTAATCCGGTAAACGTACCCTTTCGTAAAGTCGTCAATTTATTACC
TTCTGCGTACAGATGTTCAAGTTGTGAAAGATCCTGAAAAACACGAGGTT
CCAAATTTTCAATACCATTTCTTTGAAGGAATATAGATATGATAGAATCA
TACCCTTCGAAGTCTTTTTGTTTAATTTTATTAATATTATTGTCTTCTAG
ATCGAGGATAGTGATGCTTGGTATATAAAGTGATATGTTTGCAGGCAATC
TGGTCAGTTGGTTTTCGTTCAACGTGATTCGATCAAGTTTAGTGAAATTA
ACAAAAAGTTCAGCTTGAAATTCGGTGATTAGGTTTCTGTTGAGAAATAA
ATGCACAGTTTTTTTTGTATCCGATTGTGATGCAATATCCTGAAGATCTT
TGTTGGTGATATTTTGGTTCATACAATACACATTGACAGCACTATAATCT
ATTTCCCAAGAACACTCACATTTTGTTGGACAAGTTGTTGAACGCGATGC
AAAACTGGAAACAATGCAAGCCAATAAAATAAGAAGATGGTGGAATAGCA
TATTCATAATTTTGATCGTCAATTATTTTTCTTCAGGTTTTTTCCTGAAA
ATGAGAATAAAGTGATTTTATAGTTTGTGTTATACACATATTAATTATTA
ACAGCTTATTTTGGCATGAAATTCAAACCAGGCAGCTGTATGAAATATAG
GCATTATGCTGAAGGTTATTTTTTATATCTAGCCGTAGCTATTTAATTAG
AGAGAGTTTAATTTTAATAGGTAATTAGAGATTATGAACTTGGGAAACTG
TAGTAAAAATCTATAAAAAGCACATTTTATTGCTCTCTATTTAATTCTGA
ATCCCCGGACAGTTTTGTTAGCTTCGGCTAATAAGTGGATGTTCTACCGA
GATCTTTAATGGGTCTCGGACCGTTGTGCTGTTCTGGGTAGCCGAGAGTT
ACATAAAGAGAACTTAAGTTTATAAATGGAAGACCGACACCTTCAAAAGT
AGTCAGAATTTAATTGATGGGAATTTAATTAATGGAATTGTCATGAGCAA
GACTATAACATGCTCCCTTGAGCAAGGGCATCACCATGTAGCTCCCCGCG
TCAGGGTCACGACGAAGTATATGAATCATAGAGAATGATACAAGAATCAG
TTTTACCGCTGAAATTAACAGAAAAGGAATATATGTTAAGGAAACTGGTG
TCAAAGAAAAATCTCCAGCGAATCAGTTATATATGTAAAACTTGAAGGCA
GCTTCAGGAGAAGCCAATTGTCGTTTCCACGGAAACAAATACAAATGAAA
CAATTATAGTTAATGCAGAAAGAGATGATTTGAGAAATGTAAAGCAGAAT
CTTTTCAGAATATGGTCCCAGTAGGTGCTTTATGGAGAAATGTTCACTTT
TAGAGAACGTCTTCTGTGCAAGTTTGTCTTCTCTCCACTCGTATGCTGCT
GAAACGTGTCCGGCCAGTCCTAGCTCAGGAATCGATTGTAGAACAGGTAA
TAATTTCATCAATTGAAAATCATGATTATCATGCTTGAGCTGATAGTAGA
GGATTAGTGTTGTTGTGTATATACTGGTGTACAATAAGCTGCTGGCATTG
GCGGAACATACTTGATACCAGTTTTTTGGGTTCTTTCCCGGCCTCTAGCT
TTATTACTGTTCCAAAGTCTGATTCAGTGTTTTTCGGTGAAACATTTTCG
GTGCCATTGTTCGAAGCTGTTTCATTGTGATTGTCTTTTATTGTCGTTTT
GTTTTTAATGTTTGTTTTGGCATTCACGATAGCAATGCCAAAAGTGATGA
AGATTAAAAACTTCTGCATTCTTGTTGTAATTTATTTTCAATATTTGTGC
CTCCTGCATAAGTTTCTCTTATGAAGAATTCGTTTGTACAGTTTTCTATT
CTTTTTCGTTTCGGGATGGCTGCCATTCAAATGCATGTGAATAGATGTAA
CATTTCGTCATTCATATTATCATTAATGATTTACGATTGATGGCGTTTTC
CATATAAGGTAATTACATTCATTTTGTTTTAAAGTTTTTCCAGTATTGTT
CAATTATCTCTTTAGGAATAATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023758-exon-sc0000461-1575043694:89762..93036 | TCONS_00023758-exon-sc0000461-1575043694:89762..93036 | Clytia hemisphaerica | exon |
| TCONS_00023758-exon-sc0000461-1510915933:89762..93036 | TCONS_00023758-exon-sc0000461-1510915933:89762..93036 | Clytia hemisphaerica | exon |
| TCONS_00023758-exon-sc0000461-1491911889:89762..93036 | TCONS_00023758-exon-sc0000461-1491911889:89762..93036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000461 | supercontig | sc0000461:89762..93036 - |
Blast
BLAST of TCONS_00023758 vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.234e-28 Identity = 120/402 (29.85%), Postives = 170/402 (42.29%), Query Frame = -1
Query: 414 TKLDRITLNENQ-LTRLPANISLYIPSITILDLEDNNINKIKQKDFEGYDSIISIFLQRNGIENLEPRVFQDLSQLEHLYAEGNKLTTLRKGTFTGLAKLRQLFLARNDITTVETGVFGDLPSLSWIYLQFNKI-----TTARRDWFGSAV--PEILELENNPLICDCVMYDTIT---YCESYHDGTVYGKCN-------------GIELYDFYRKN----------KLNCSSCSVNECQNDATCQV--ADQFNYNCSCSRNNHGEFCQFENACSFNLRLKPCQD---ITNSICVPIQNTFKCDCRVGYSGERCQMK-DICYLD-NPCQNDGNCKKSNISMGYKCDCRVGYSGERCQMK-DICYFDNPCQNHGICQRSNISMGYTCQCNEGYHGQQCQLSIP 1493
T LD + N+ L LP I + + + D N + K+ Y + I L N I L + F +++QL L N+L + TF GL LR L L NDI+ V G F DL +LS + + N + DW S P I + D ++ T + C+ D + KCN + DFYR + +C N C++ TC + ++ + C C+ GE C+ + + C+D NS CV N + C C Y+GE C+ K D C D NPCQ+D C + G+KCDC GY GE C + D C DN C+N C ++ GYTC C EGY G C+ S P
Sbjct: 732 TCLDTVVRCSNKGLKVLPKGIPRDVTELYL----DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCE--------VNVDDCEDNDCENNSTCVDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILT--PKGFKCDCTPGYVGEHCDIDFDDCQ-DNKCKNGAHC--TDAVNGYTCICPEGYSGLFCEFSPP 1116
The following BLAST results are available for this feature:
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