TCONS_00023771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023771
Unique NameTCONS_00023771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023771 ID=TCONS_00023771|Name=TCONS_00023771|organism=Clytia hemisphaerica|type=transcript|length=828bp
ggtaaatattcatcttaaaaaaaaattatggcaGAAAATTCACTCAATAA
CATCAACATTATCAGACAAATTCAAGGTCAAGTATCAAGTCTTGATGAGT
GCAAAACCAAAGAAGATATTTCAAACCATTGTCAAAGTCTAATGAAGTCT
TTAGAAACAGTTCAAAATGTTATCAACACAAAGAATGAGGGTCAACTACA
AATTTTACATGAAACTGGATTAAAACTATGGAATTTAGTGGTAGCAAAGA
AACTAAATAAGCTAGTTGAGCGTGTTGCAATTGCTCAGGCTAGATATGTT
GCACTTCAGTTGACGTACATGGTCGCCCTGGGTGAACATTCAAAGACAAC
TTCCAGGAAACAACAAACAATGGCAATGAAAGTTGGAAAAGATTGGTTAG
TGCTACATCAAGCTAATGAAATTGTTGGAAAATGGCGAATCTGAAACACA
TTTGAGTATTACTGAAGAACAAATTAAACAATGTCATGCACAAATGATGC
AAGTCTTCTTGTTCAGGGCAGAGTTGGCTTTACGAAATAGTCAACATGCT
ACTGCAATGGACTTTGCAAACAAAGCCAAAGAACTTGTTTTCAAAGAACA
GTTAAAGgcTGATTCTTTGTGTACAGCTTCATACAACTTTGGTTTGGAAT
GCTATCAGAAAGAACTCTATAATTATAGCAAAGAATGGCTAAAACAGTCC
ATTGAAATTGGGAAAGAAACGCCAACTGTCAAAAGCGAACAACAGGCTTC
GTCACGTCAACTGCTTGCTCTTGTGTATGTAGAACTGAAGGGTGATGATA
ATTATGCAAACGCTTTAAATGTCATTGG
Run BLAST on NCBI

transcript from alignment at sc0000461:232277..237836-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023771 ID=TCONS_00023771|Name=TCONS_00023771|organism=Clytia hemisphaerica|type=transcript|length=5560bp|location=Sequence derived from alignment at sc0000461:232277..237836- (Clytia hemisphaerica)
GGTAAATATTCATCTTAAAAAAAAATTATGGCAGAAAATTCACTCAATAA
CATCAACATTATCAGACAAATTCAAGGTATGTTAATATTATTTAAATTCT
AACTGTCTTTTTAACTTTTCACAATGTTTTAAAAAATATACAGTTTGAAA
ATTGTTCTGCTTACCACACTACCTTATTAATTAGATGGAGCTAAAATTTT
ATACATCTTTTTTTTTGCATTACAAACTATATTTGAAAACTACATATTTG
CATTTTCAATTCTTTTTTTTAAAAGTCGTTAATTTTTTGCAGGAATTGAA
TTTATGAATGATCAAATTGTATGTTGATTTAGCAAGACACAGAAAAGCAA
AAATCTGTTCTTACAAATATTTGGCAATTAATTTTAAAGATTATCTTTAA
AACTAGGAATGTACAACGACTGTATTATTATATCTTCTAGATTTAGTTTA
AAACTCCTCCAAGAAACACCAGCCTGCTTTCCAGACTGGCTCTGGAGAAT
GTCAAAACTAAAAGTATTCAATTTATTTGGAATTTAGGTCAAGTATCAAG
TCTTGATGAGTGCAAAACCAAAGAAGATATTTCAAACCATTGTCAAAGTC
TAATGAAGTCTTTAGAAACAGTTCAAAATGTTATCAACACAAAGAATGAG
GGTCAACTACAAATTTTACATGAAACTGGATTAAAACTATGGAATTTAGT
GGTAGCAAAGAAACTAAATAAGCTAGTTGAGCGTGTTGCAATTGCTCAGG
GTATGTTTATTTGATTTCACCAAGCATTTTAAAGACTTCTTTAAAAGTAA
TAAAACGTAAATCAGGGTTTAAAAAATGAAAAAATCTTTTCAAAGAAGCT
GTAAATTGCAAAGTTCTATATTTTTACAAAGTTGTGTTTATGAAGGGTAT
ACTTTTTCAGCAAGTTGTTTTGCAGTTGTTTAACTATTAATTCAAAACCT
CACTTTTTTCCAATTTTTGTTCCTTTTCCACTTCAGCTAGATATGTTGCA
CTTCAGTTGACGTACATGGTCGCCCTGGGTGAACATTCAAAGACAACTTC
CAGGAAACAACAAACAGTATTAAATTATTGATATCCAACATAATTCGCTT
TATCCTAAATAAATTCTAGTAAGAGATATACTTAAACCTCCTTAGCCAAC
AATTTGAAACTTACGCCATTAGTAGAACATTGTAATGACTTCAACATTTC
AATGATACTGCCCAGGCGAAATCGTACAAATTACATATTTTTGATATTTG
GGTTTGGTTGAAGGTTATAGTATAGGTTATATTTTACGAGTTTCAAAATC
AATTTACCATTTATAGTATCTACAACACATGTCACTATGCTAAATGTAAG
ATACAAGTATTGTGTATGATTTATTCTTTTGTTATTAGATGGCAATGAAA
GTTGGAAAAGATTGGTTAGGTAAAATCTGTTCTCCTTATTATTTTTCAAA
GATTTGAGTTTGCTCTAGTGGAAATGGTTTAAGGAAATTCTTTTTCAGAT
TTTCTGATAAATATCATCTAAAAATACCTACATAAAGACTTTTATTCACA
TGATCCCTTGAATGGGTCTGATGTCTGGTGTCTGGTGTCTGGTGTAATTT
TTTCAATCTTGAACAATTTTTATATAACTTTCTTTTTTAGTTGTAGATTG
CTCAAGCAGCACCAGTTAAGAAAAGATTCAGAATTGATAGACCAAAAGAG
TTAATAGTTTCTAGATCTTTCTAGTGATTTTTGAAGTTAAGCTGTCTCAT
TTTGTCATTTGTGTTAGATGGCTAGTATTTAGCATTAAAAAATCTTTGCC
TTTTATTTTTAGAATGTGGCAATAGTTCTTATTCAGAAGCTTGTTTTATC
ATCAGCACAGAAGTTAGTATCTTTTAAATGGAGATCGTTAGAATTATTTA
GTTCTGGTTAGAAACACTTCCACCATAAGATATCTTAGTTTTGGTCAGAT
TACTACTACATTCTGCCAAATGAAAGGTGCTTTTGGAAAGAAATTTCATT
TGCTCTTATCATTACAGTTTATCCATATTGGAAATGAAGAGCTAGCATTT
CCAAACAGTGTTTTGTTCAATCTTGAAGCAATGCAGTATATTGTAGATTT
TGTATCAATGAATTAAGTTTATTTATTGTTTCTTCCAAATATTTTTTAAT
CAGACGAAATTTTGATATTCTCCTTTTTGCAGTGCTACATCAAGCTAATG
AAATTGTTGGAAAATGGCGAATCTGAAACACATTTGAGTATTACTGAAGA
ACAAATTAAACAATGTCATGCACAAATGATGCAAGTCTTCTTGTTCAGGG
CAGAGTTGGTAAGGAAACTTCCGATATTTTTTAAGAAAAATACAGATATC
AGCAGAAAAATAACTTTTTCTCTACTTTTGATCCCATTTTCATGTTCACT
TTTTGTGCTTAATCTACTGGGCGAAGAGTTTCTTCATTCAAAAGATTTTA
AAAATCTACATACTTGTAAAAGGGGTGTATGAAAAAAAATTATCACCTGT
TCAGTCTAGTACATAGCAACCTAAAAAGTCATGATCTCCTCATTACTTTT
TAAGGTGAGTTATGGCCCTTTTTTCCTGGATTTTAATGATATTTTTCCGT
CTTTTTTGGTCTGGCAGTAGAGTTCCAAGCCAAATGCACAACCTTTCCTA
GGCAGGCAAATGTGAAGTCTTAACCCTATTCGTCCTAGAGGGGGCTGTTT
CTGTTCGGGGGCAAAACTAATGTTAATAACTCCTGAAATAATAGAGCTTT
TGGCATGAAATTTTCTGTAAATTCCTAACTTTTATTCAGCTTCAAACTAA
AAAAAAAATTGACGCCTAAAAATTTTCACACCTTGAGCATGATAACATTT
CTGACAGTAAGGTGTCACAAAAATCGACACATAATTCCAATACAAATTTA
ATTTTTATTTCAAATATATCGTTTAAACCGTAATTTTATTGAATATTTAG
GATAAAATAAGCATTTTAGAATCAGGGAACTTTTTTCTAAAGCCTTTGTT
GAATACAATAGCTATTTATAAGCACAAAAGACATTTTCGGTTTTTACTCA
CTTTGGGCATGATGAGTGACGTCATCAAAAAAATTTTTTGTCAAAAGTTA
CTTTACATGACAAGAATCTTGTGTGCTAAATTTCATCGAAAAAGACCCAC
TAAATCAAAAGTTAAGGAGTGGTACAGGAAAAATCCCCCCTAGTTTTGAA
CCGCCCCTAAAAACCTAGTATGAATAGGGTTAAGACTTGCGTGCAAATTC
GAATTACAGATTGAATCTATCATCTGTTTTTTTGCATTTTATATTTTTTG
AATACCTGCAGTAAATTTTACTTTCAATCCAGCATTTGCATGAAAATCCT
GCAACTTCTGTAGGAAATGAGTAGCTTCTATCTAATCCTACATAGATTCG
TCTCTAGTCTTATTTATTTGCCTCAAAAGCTCTTTTAACTTGGTAGAGTA
TTTATTTTATCGAATTTCCTCATTGAGTACGGTAACTTGCCTATGAGAAA
CTTTTACAGAATCTTTTTAATGATTAAGATGAGTTACTACACAGCGTTTG
ATCACAGGAAAATTGTTCCATAAAAGTTATCTTCTTTCATTTCATAGGCT
TTACGAAATAGTCAACATGCTACTGCAATGGACTTTGCAAACAAAGCCAA
AGAACTTGTTTTCAAAGAACAGTTAAAGGTACCAAAGCATACATTATTTA
GATTTTAAGATAGAAAAAGATATCTTATAAGCGTCCTCTTAACTCATCAA
GTGCTACTGATGTTTGTCCACTTCAATTATTCCTTTTTTTACGGTAATCT
ATGCAATTCTTGTAATTTCTAACAAATGGATAGTTTTATTAATCTAAGTT
CAAGATCTGTATCTACATTTTAGCCAGTATAGAAAATGTTTTCTAATTTT
CAAACTTTCATTATATTTTCAATTTTTTTCAGGCTGATTCTTTGTGTACA
GCTTCATACAACTTTGGTTTGGAATGCTATCAGAAAGAACTCTATAATTA
TAGCAAAGAATGGCTAAAGTAAGATTTGTCCCTCATTCATCAAAATCTTC
TCTAAAATTTTCACCTAGCCTTGGGTCCACTTAAGGCTTGATAGACTGGA
TGGCGCGATCAAGTGGCCTGTAGTATGTGGACTGTGAAAACAGTCCGTCA
GATTTGAGTTGTTTTTAAAAGGTAAAAAAAGAATGAAGCAAGGTTTTCAT
TGAAATGTTATCTATCTCTTATTCCTTTTTTACACATCTTTGTCTACTTT
ATACGGACAAAAAAGCTTTTAAAATTATTGGCTGTGATGTGTTTAAATTA
TGTTATGTGGGGTTTTGTTCTAACACTTGAAGATAAGGTGTTTTAATCTT
TGACAGTATTGGTTACTTTAATCGTAGAAATCTTAGCGAAACTAATTTTA
GCGTAAATTAGCGAGTCAGGAAAATCTTGATTTTTTTGGGATTTATTTTA
GCGAATCACGATTTCAAAAAATTTCGCGTGGATAAATTTTAGCGAATATT
CGTATCAAATTATCGACTGAATTCGTTTACTTTCATTTCTTTGCACTGAA
ACCCTTCCTATTGATAAAAATGTATCAAGGCAATATAACCAGAAATTTCT
CGCTGATAAATTTTAGCGATCTGTCGATTCGGCGTGTTTGAGCGAGATTT
ATTTTAGCGAAAATAGGGAAAACTCGCTAAAACGCGCCGAATTAGTCTTG
CTAAAATTTCTACGATTAAAGTATTATTAATTGCAAAGGCACAGGTTTCT
TAAGGTTCTTTTTAGTTTATTAAGAGTGTAATTTTCATGTTTTTAACATT
TATAGACAGTCCATTGAAATTGGGAAAGAAACGCCAACTGTCAAAAGCGA
ACAACAGGTAAAGTCAAAAGTTAAAAAAGTATGATTACGATATTTGAGTA
ATATGTAACTAGGATTTAGATAATAATTCATTTTTGATTTGTTTCTAAGT
AAGAGTTTGTGACAGAATATAGGACAATCAGAACAAAAGGAGACTCCAAA
GAGGGTAGTCGAGCTAAAAACAACAACAACATTTTCGCCGTCTGAAAATA
TTGTTATCAAATTCTAGCCCTTCAGCCAGGGAGGCTTTGTCCCGGCTTTG
TCTAAAGATTTTTTTTGAGTGCCCCCCTCCCGTTTAACACGACAGGATCA
AAGTCCTACATTTACTAAAAAAAGACAAAAAGAAAGACTAATTTCGCCGT
CCACAACCCCGACCTGGTTAGTTTGTCCACCCCTACGAATTCACCATATT
TGTTTATCACGGGAATTATCTACATATGGTTTAAAGAACGACAAATAACG
CATGTGTGTTACACGAATGCAGGATTCTTTAGAGGAACAGACTGACTACA
CTCAACGGCTTGCAAGACCTGAGCAATAAGCAAAAAGGGATCGAGGGGTA
AAGAAATAGGATTTAATGATTGATATTTCACTGTTGATCTGACTGATTAT
CTACCAGATATCTTTATTTCATGTTAGGCTTCGTCACGTCAACTGCTTGC
TCTTGTGTATGTAGAACTGAAGGGTGATGATAATTATGCAAACGCTTTAA
ATGTCATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013356XLOC_013356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023771-exon-sc0000461-1575043694:237761..237836TCONS_00023771-exon-sc0000461-1575043694:237761..237836Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:237087..237299TCONS_00023771-exon-sc0000461-1575043694:237087..237299Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:236771..236850TCONS_00023771-exon-sc0000461-1575043694:236771..236850Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:236418..236448TCONS_00023771-exon-sc0000461-1575043694:236418..236448Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:235529..235654TCONS_00023771-exon-sc0000461-1575043694:235529..235654Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:234159..234239TCONS_00023771-exon-sc0000461-1575043694:234159..234239Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:233819..233904TCONS_00023771-exon-sc0000461-1575043694:233819..233904Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:232980..233031TCONS_00023771-exon-sc0000461-1575043694:232980..233031Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1575043694:232277..232359TCONS_00023771-exon-sc0000461-1575043694:232277..232359Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:237761..237836TCONS_00023771-exon-sc0000461-1510915933:237761..237836Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:237087..237299TCONS_00023771-exon-sc0000461-1510915933:237087..237299Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:236771..236850TCONS_00023771-exon-sc0000461-1510915933:236771..236850Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:236418..236448TCONS_00023771-exon-sc0000461-1510915933:236418..236448Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:235529..235654TCONS_00023771-exon-sc0000461-1510915933:235529..235654Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:234159..234239TCONS_00023771-exon-sc0000461-1510915933:234159..234239Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:233819..233904TCONS_00023771-exon-sc0000461-1510915933:233819..233904Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:232980..233031TCONS_00023771-exon-sc0000461-1510915933:232980..233031Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1510915933:232277..232359TCONS_00023771-exon-sc0000461-1510915933:232277..232359Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:237761..237836TCONS_00023771-exon-sc0000461-1491911889:237761..237836Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:237087..237299TCONS_00023771-exon-sc0000461-1491911889:237087..237299Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:236771..236850TCONS_00023771-exon-sc0000461-1491911889:236771..236850Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:236418..236448TCONS_00023771-exon-sc0000461-1491911889:236418..236448Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:235529..235654TCONS_00023771-exon-sc0000461-1491911889:235529..235654Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:234159..234239TCONS_00023771-exon-sc0000461-1491911889:234159..234239Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:233819..233904TCONS_00023771-exon-sc0000461-1491911889:233819..233904Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:232980..233031TCONS_00023771-exon-sc0000461-1491911889:232980..233031Clytia hemisphaericaexon
TCONS_00023771-exon-sc0000461-1491911889:232277..232359TCONS_00023771-exon-sc0000461-1491911889:232277..232359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000461supercontigsc0000461:232277..237836 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.49619	3.6329	0.000927879	0	3.385	2.18509	3.09485	2.55177	2.27	2.2132	1.85816	2.06125	1.48661	1.74179	1.59471	2.68929	3.01181	2.98	0.852974	1.7214	2.51009	2.49435	1.77433	1.79236	1.10678	1.92721	0.550128	0.335492	1.01784	0.00157199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top