TCONS_00023772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023772
Unique NameTCONS_00023772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023772 ID=TCONS_00023772|Name=TCONS_00023772|organism=Clytia hemisphaerica|type=transcript|length=557bp
NNGGACGGTGCTTATCCAGAAAGACCCTGCAAAAGGAACAGTTGCTGCTA
ATTACCGACCTATAGCATGCCTCCCTCTCATGTGGAAGCTGTTAACTGGG
ATATTTGCAGGGAAAATCTATGAGCACCTGGAAACCAATGATCTCCTCCC
AGAGGAACAGAAAGGATGTAGGAAGAAATCACGAGGAACTAAGGACCAAC
TGTTGATAGATAAGGCTGTTTTGAAGGAAGCCAAAAGATGCAAACGCAAT
CTTTCCATGGCTTGGGTGGATTACAGGAAGGCGTATGATTTGATACCACA
TTCTTGGTTGTTACGAATTCTGGATCTTACCAAGGTTGCAGGCAACATTG
GTAAGCTTATTCAAAACAGCATGGGAATGTGGCGGACTGAACTCACGTGT
AATGGTGAACGACTTTGTGATGTTAACATAAGACGTGGTATTTTCCAGGG
AGATTCACTCTCTCCtcttctttttgtaatggcAATGATCCCTCTCACCA
CCCTTTTGAGAAGGGAAAGTTTTGGGTTCAAATTCAAaggaaatgaaaca
aaaatca
Run BLAST on NCBI

protein sequence of TCONS_00023772-protein

>TCONS_00023772-protein ID=TCONS_00023772-protein|Name=TCONS_00023772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
XTVLIQKDPAKGTVAANYRPIACLPLMWKLLTGIFAGKIYEHLETNDLLP
EEQKGCRKKSRGTKDQLLIDKAVLKEAKRCKRNLSMAWVDYRKAYDLIPH
SWLLRILDLTKVAGNIGKLIQNSMGMWRTELTCNGERLCDVNIRRGIFQG
DSLSPLLFVMAMIPLTTLLRRESFGFKFKGNETKI
Run BLAST on NCBI

transcript from alignment at sc0000461:20..576

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023772 ID=TCONS_00023772|Name=TCONS_00023772|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000461:20..576 (Clytia hemisphaerica)
tgatttttgtttcatttcctTTGAATTTGAACCCAAAACTTTCCCTTCTC
AAAAGGGTGGTGAGAGGGATCATTgccattacaaaaagaagaGGAGAGAG
TGAATCTCCCTGGAAAATACCACGTCTTATGTTAACATCACAAAGTCGTT
CACCATTACACGTGAGTTCAGTCCGCCACATTCCCATGCTGTTTTGAATA
AGCTTACCAATGTTGCCTGCAACCTTGGTAAGATCCAGAATTCGTAACAA
CCAAGAATGTGGTATCAAATCATACGCCTTCCTGTAATCCACCCAAGCCA
TGGAAAGATTGCGTTTGCATCTTTTGGCTTCCTTCAAAACAGCCTTATCT
ATCAACAGTTGGTCCTTAGTTCCTCGTGATTTCTTCCTACATCCTTTCTG
TTCCTCTGGGAGGAGATCATTGGTTTCCAGGTGCTCATAGATTTTCCCTG
CAAATATCCCAGTTAACAGCTTCCACATGAGAGGGAGGCATGCTATAGGT
CGGTAATTAGCAGCAACTGTTCCTTTTGCAGGGTCTTTCTGGATAAGCAC
CGTCCNN

Coding sequence (CDS) from alignment at sc0000461:20..576

>TCONS_00023772 ID=TCONS_00023772|Name=TCONS_00023772|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000461:20..576 (Clytia hemisphaerica)
gatttttgtttcatttcctTTGAATTTGAACCCAAAACTTTCCCTTCTCA
AAAGGGTGGTGAGAGGGATCATTgccattacaaaaagaagaGGAGAGAGT
GAATCTCCCTGGAAAATACCACGTCTTATGTTAACATCACAAAGTCGTTC
ACCATTACACGTGAGTTCAGTCCGCCACATTCCCATGCTGTTTTGAATAA
GCTTACCAATGTTGCCTGCAACCTTGGTAAGATCCAGAATTCGTAACAAC
CAAGAATGTGGTATCAAATCATACGCCTTCCTGTAATCCACCCAAGCCAT
GGAAAGATTGCGTTTGCATCTTTTGGCTTCCTTCAAAACAGCCTTATCTA
TCAACAGTTGGTCCTTAGTTCCTCGTGATTTCTTCCTACATCCTTTCTGT
TCCTCTGGGAGGAGATCATTGGTTTCCAGGTGCTCATAGATTTTCCCTGC
AAATATCCCAGTTAACAGCTTCCACATGAGAGGGAGGCATGCTATAGGTC
GGTAATTAGCAGCAACTGTTCCTTTTGCAGGGTCTTTCTGGATAAGCACC
GTCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013357XLOC_013357Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023772-proteinTCONS_00023772-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023772-exon-sc0000461-1491911889:20..576TCONS_00023772-exon-sc0000461-1491911889:20..576Clytia hemisphaericaexon
TCONS_00023772-exon-sc0000461-1510915933:20..576TCONS_00023772-exon-sc0000461-1510915933:20..576Clytia hemisphaericaexon
TCONS_00023772-exon-sc0000461-1575043694:20..576TCONS_00023772-exon-sc0000461-1575043694:20..576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000461supercontigsc0000461:20..576 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101948	0.0994149	0	0	0.137482	0.21728	0.13107	0.613529	0	0.212825	0	0.203689	0.339011	0.140826	0.173668	0.559116	0.306127	0.235327	0	0	0.0985687	0.28847	0.116891	0.106271	0.218913	0	0	0	0.226308	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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