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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023786 ID=TCONS_00023786|Name=TCONS_00023786|organism=Clytia hemisphaerica|type=transcript|length=3718bpRun BLAST on NCBI protein sequence of TCONS_00023786-protein >TCONS_00023786-protein ID=TCONS_00023786-protein|Name=TCONS_00023786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp MATPGGGKKGKKKKGGKGQTLSLNAFLGDTPTVAPPSKPSSNWADDDDLGRun BLAST on NCBI transcript from alignment at sc0000462:46431..68502+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023786 ID=TCONS_00023786|Name=TCONS_00023786|organism=Clytia hemisphaerica|type=transcript|length=22072bp|location=Sequence derived from alignment at sc0000462:46431..68502+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000462:46431..68502+ >TCONS_00023786 ID=TCONS_00023786|Name=TCONS_00023786|organism=Clytia hemisphaerica|type=CDS|length=23184bp|location=Sequence derived from alignment at sc0000462:46431..68502+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023786 vs. Swiss-Prot (Human)
Match: IF4B (Eukaryotic translation initiation factor 4B OS=Homo sapiens GN=EIF4B PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 5.689e-24 Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 718 IDLSKLPSAPRASRGVDIDLSKLPSKPPYTAFLGNLPFETDEEDIVELFRGLNVENIRLPQDQG---RAKGFGYAEFYEIEQLKKALALNGEKIRSRPIRIDIAESGKXXXXXXXXXXXXXXXXXDDRTDNDW 1107
ID S LP+APRA+R +ID S+LP PPYTAFLGNLP++ EE I E FRGLN+ +RLP++ R KGFGYAEF +++ L AL+LN E + +R IR+D+A+ +D+ S G D+TD DW
Sbjct: 68 IDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRDDRSFGRDRNRDS-DKTDTDW 199 The following BLAST results are available for this feature:
BLAST of TCONS_00023786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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