TCONS_00023816 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023816
Unique Name	TCONS_00023816
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	318

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000462:22414..29196-

transcript sequence

>TCONS_00023816 ID=TCONS_00023816|Name=TCONS_00023816|organism=Clytia hemisphaerica|type=transcript|length=318bp
AAAAAATCCGTCTATAATCTCAGATCCTTTTTTTATCAGATTGAACGCTG
GTGGAAGGAGTTGCATGAGAAACTAGAAGAATATTATAAAGACCAATTAA
GAACCATGAAAGACAACCTTATGTACGATCCAAAAAACGAATTACACAGg
gAAATTCTTGCGTATGTTATGGTACCAATAATTCAATATCAAGTGGATGT
ATTTGTTGAGTTGTGGAATAATCATCGGATtcgtaaacaaaaataaacgt
ATTTGCCTACCGGAAAACCCTCTCATATTTACAGTTTTTCAGAGAATTGG
GGTCTTCACGAGTGTGGT

Run BLAST on NCBI

transcript from alignment at sc0000462:22414..29196-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023816 ID=TCONS_00023816|Name=TCONS_00023816|organism=Clytia hemisphaerica|type=transcript|length=6783bp|location=Sequence derived from alignment at sc0000462:22414..29196- (Clytia hemisphaerica)
AAAAAATCCGTCTATAATCTCAGATCCTTTTTTTATCAGATTGAACGCTG
GTGGAAGGAGTTGCATGAGAAACTAGAAGAATATTATAAAGACCAATTAA
GAACCATGAAAGACAACCTTATGTACGATCCAAAAAACGAATTACACAGG
TAAGGTATTACAGTATTTCAAAAAAGAAAGAAAACTGGCAGTCGCCTCAT
TTTGATATCCTTTGGCAAGATCTGCGTACGCGGGACGTAAATTTGTATAT
GTTCAGAAAAATGTCCCCAAAACTGTTACCTCCAACGAAAAATGTCGAGT
TTGCTCTGTATTGAAGAATGGCACCTGTTTAGCCAGCGAAAAGAAGCATT
TACCTCGTAAATTTTATTGAAAATTAAATTTAGTAAAACTTTGGTTCTGA
TTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGTAAAATTGAATAAGATTGGAACATTTTTCT
TGATGCCACACAAGAAAACAGTCACTTCTGGATCTGTCGCTGTTAACAAA
ACAACGGTCAGTGACAATGGAACGTGGTACCATGAAGTCGGGTAGCTTGC
ATCAGTGGAGGCAAACATGCATACCCTCAAATGAATGACCTGTCTGGTCA
TTAAAATACAAAGTTAAATCAAAACAAAAATGGTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCGTTTGACGATTGGTGGCTTGATTTTTCAAACTCGATACAA
AATTATTTCAAGTAAGCTGATTTTGAAATTATGTTAATGGAGACTAAAAT
GCAGCTTGTGTGTAAATTTGAACAAGATTGGGTCTTTTTTCACGATTCTA
CGCATATTAAATAAATTTCTGGATCTGTCGCATTAAACGGTCGCTTGATT
TTTCAAACTCTTTCACCGTTTAGTTTTAAAGATCATTTTTCTGGTTTACG
GTCTGATCCAACTAACATATGCCTACAGGGATATTTCTCCCTACATGTGA
GTGCACCTACCTTAAGGGAAGAAATTTTCGCGAGAAGAAATTTTCGCGGA
ATTTAATTTCGCGAATCAGAGTTTCAAAATGGCAAATTTCGCGGAATTTA
ATTTCGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCGCGAATGAGCCG
ATTTCAAAAGTTTCACGGAATTTAATTTCGCGATTAAGAAGAAGTTATCA
ACTTAAATTAACTTTTAACCACCACGGAGTTATTTATATTTGTTTATATT
TGATAAGAAATACACGTTATAATGCTTAAAAATCAATTGTGTCCATGTTT
TTTGGTAATACCTGGTCAAAAACAACAAAATAAAAGAAGAAGAAAAAAAA
TGGAATTTCGCGGAATTTAATTTCGCGATTTAACAATTTTGGTGTGTTTC
GCGGAATTTAATTTCTTCCGCGAAAATTTCTTCTCGCGAAAATTTCTTCT
CTTAAGGGCCATTGGGGACGATATTTTAGCTAATTTTTCCAGTGGGAAGG
GTTCCCAGTGTGTCTGTCAGAAGGAGATATAATCTGCATTTCCGTGAATA
CACTCTTTTGTTATAAGAACCAGTAAATATCTCGGCTTTATTATCGGCAA
TTTGAGCCTAAAATTTGTTTTTAAATCTATTATATCTTGTCCTTATTTAG
CCACAAAAGAATGGATGCAAAGGGATTGGTCGTAAGTTGGGTTATCAACA
TTGAATTCAAAGCCCCATAGGGTCTAGAGAGTAATTTTCAGCCTTTCTTA
GGCAAGAAAACGTGTAAACTATGCTATAGTCTAAGACGAATCACTATCTA
AGAAAAAAGCCCAAAGCCGAAGAAAATTCGCAAACGGTTTTTTTTGCCGA
AAAGAGTTTACAGTGGGTAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGCTGAATGAAATTTTCGATAAATGCTCAGAATGGTCTGATGGTTGTTTA
CCTTGTGGCATTCAAACTTCATGGTACATTGTGATAATTTGATTGGAGTA
ACCGTTCCTATTACATCAATTGATCTCAGCGAAAACTATTTTTATGGCTT
GATCAAACCAAACCAAACAGCAGCAGTCAAGTCAGATTTAAAACAACATT
TGGATTTTATAATTTTATTGGAAATGTTATCGTTAAATTTTACACTCAGC
GGGCATTGTTGCCAAACAATGATTTTTTTGTCACGTTGTCGTTGTTTAAC
AATTTGAGTAAACGCTTTTACAAAGAACATTAATATTAGGTGATTGTATG
TGGTCAGTAATATTCGTTGAATATAGTATTGAGGCGAGGAGGTACGATGT
GAAGAACAGACACAATATTTTCAGGAGTTTTTAATCAGTCTACATAAAAT
TAGAAGGACTTTGTTGTGGTTTGAGATCAAGCAAACATTACGCGATTCCC
ATCATCCAGGTTCGATAAAATACAATTCGATACCTTGAAAACAGCTCTGG
CCGAAACATGTTGGAAATTTGTAGCATATAATGGTCAGATAGTATTTTTT
TCTCGATCCTCGTCCAATATATACAATTTCGATATACAATAATGTACGTA
TAATGCAACACAAGAAAGGGGTAAAATGAATGCAATAATTGCTGCCTTAC
TACAATCTAATAATGTTTCAAGAGGTTTATATACAAGAGATGGGTAAAAG
TCATTGCAAGATTTGTTTTTTCGATTGCATGAATTGGATGAATGTACGAA
AACTAGAAAATGTACTGAATTATAAATTATTGATATTTTTGTGAAAATGG
AATCTATTTTTTGCTGTTATTAGTTAGGACATCCTAATTATCAAAAGCTA
TTTTCTTGATCACGATTTCACCTTGAATATTCAAAAACTGCAACAGCAAA
ACAATGAAAAGAAAGACTACACTTTCAATAACACATCAGTGTATTATTGT
TTTTATGCTGCAGTTTTTCCTTAATAATTCAACATGACCTCGTGATTAAG
AGAGGGTCTTTTTTCACAGGATACACGTTTTTTTTTTTATAAGAACGTCA
AAAATTTTCGAAGCCTTCGGATGTTCTTAGTTTTTTGGATTTGAAGCCTA
AAAATGTTCTTGAAATGTTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAAGCCTTAGAATGT
TCTTAGAATGTTCTTAAATTTTTGGGCCTCGAAGCCTTATGTTCTTATAT
AGTTTGTTCTTATAAAAAAAAAAACGTGTACGTATGTTGAGAATCTTGTT
GTAGATACTTTTTTTAAGACACACCAAATTATTTTTAGTTCAAAAGCCTT
GTATAGAATACTCTCTGTAACACCCCTAAGTCCAATATGAGCTATGATGC
TAGTTTTTAGAGTTTTAGTTTTTATTTTTGATATTATTTTTTGTTATTTT
ACCCTGTGGAAAGTGTATTGAGCAGATATTTTTGTAATTTTGATCAGCAA
GATTTTTTAAAGCTGATATAAAAGTATCACAAAATCGAGTACAAATGACT
TTTCAAATACCCCCAGGTGCTTTTGGAAAACCTCTGTTCTCTAATTTTTC
AAACATTCCCAGTGGCAATAAATTCAACGTGAATTGTAAGGTCCTATTAG
TTTTTCTTTTTTTTGTAATTCTGCATTAATAATGGATTAGTACATTTTGA
GATTTCTTCGCTTTGCGAAAACAGAACGCTCGTTCCGCAAGCCCTTTTAT
GTTGATTTATCATCTTATTCACTATACTGTATGAAGAATTTATATATGTA
GTTTTTGTTGAAATTATGTCCAGGCAAATGCGACATTCAAAACTAAAATT
AAAATGACATCCAAAACGTAAAATTAGAATTTCTTTCTCTAAGCAACATG
TTTTCTTTTTTCAGGGAAATTCTTGCGTATGTTATGGTACCAATAATTCA
ATATCAAGTGGATGTATTTGTTGAGTTGTGGAATAATCATCGGATTCGTA
AACAAAAATAAACGTATTTGCCTACCGGAAAACCCTCTCATATTTACAGT
TTTTCAGAGAATTGGGGTCTTCACGAGTGTGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013380	XLOC_013380	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023816-exon-sc0000462-1575043694:29048..29196	TCONS_00023816-exon-sc0000462-1575043694:29048..29196	Clytia hemisphaerica	exon
TCONS_00023816-exon-sc0000462-1575043694:22414..22582	TCONS_00023816-exon-sc0000462-1575043694:22414..22582	Clytia hemisphaerica	exon
TCONS_00023816-exon-sc0000462-1510915933:29048..29196	TCONS_00023816-exon-sc0000462-1510915933:29048..29196	Clytia hemisphaerica	exon
TCONS_00023816-exon-sc0000462-1510915933:22414..22582	TCONS_00023816-exon-sc0000462-1510915933:22414..22582	Clytia hemisphaerica	exon
TCONS_00023816-exon-sc0000462-1491911889:29048..29196	TCONS_00023816-exon-sc0000462-1491911889:29048..29196	Clytia hemisphaerica	exon
TCONS_00023816-exon-sc0000462-1491911889:22414..22582	TCONS_00023816-exon-sc0000462-1491911889:22414..22582	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000462	supercontig	sc0000462:22414..29196 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325432	0	0.736942	0	0.877727	1.38718	0.418395	0	0.274236	0	2.30795	1.30042	0.649304	0.22477	0.184791	0.793237	1.4658	0.2504	0.691883	1.44801	0	0	0.373134	0.339233	0	0.935499	0.446232	0	0.361204	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023816 vs. Swiss-Prot (Human)

BLAST of TCONS_00023816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023816 (transcript) - C. hemisphaerica