TCONS_00023823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023823
Unique NameTCONS_00023823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023823 ID=TCONS_00023823|Name=TCONS_00023823|organism=Clytia hemisphaerica|type=transcript|length=2067bp
CCCCCATGttcggacattttctggaagagcccaatttatTAATGCGAAAG
TCAGGGTTTTCGAAAATTACCACGGCTCAATTTTGTTAAACAGTTGTAAT
CAAAAGGAGGGTAACCGATTCGCGTTTAAAATAACTTGAGTAGTTATATA
AGTGCAACAAGGTAttcaaaacaaattgtaaacagtgtttacacgctttt
tcgtttataagaatatattttattaGATTATGTATGAAAttagccaaaaa
attaagaatatattCTAAGAacatcaccatcatggaatttgacaaaagat
cctaagaaaatcactttttaatagaccttttttcaaagaggacgtcctgt
tgaataattatgtagtccagccatataaacaatgataaagccatgcataa
ttactgtatcatgcatattgtaataattatgcatggttttagcattgttt
ttctgctggactacataattattcaacagggtggccactttgaaaaaagg
tctattattcaacatgacattgcGATTAGATTAAAGGATTATCCTGAGat
agggtaacttgcatcagtggaagctaacatgcatagccctcaaatgaatg
gcctggctggtcattaaaatacaaagttaaataaaaacaaacctgattta
caaaaACCATAAAAGTGATAGGTAGGTAGGTGCATAGGTAGGAAATTATG
TTTAATATCACTATTAAGTGATATCCACCGAAAAAGAAGAAGTCTTCGTT
TAATCTGcaatgaagtgttataaaattccttatagaaaTAAAAGACACAT
TCTCCTANTCTGATCGTCTTTTTAATCTGCAATGAattgttataaaattc
cttatagaaaTAAAAGACACATTCTCCTACGAAGAGGTTTCAAAAAATGA
cgtagaaaataaaaagtatgTCATTTTATCTTAACAATTTCGTAAACTAC
GTCACAACCACTGccttttagttttatgacttgttctcactcgtttggtt
tctgtaataaaaagaaagttgttattgggaactttgaacatgcttaaaaT
TGAGGCACTTCCAATAACTGACCAAAAATACTCGCATAGCAAATatgaga
ttctaaaatggtagagtagagctgcaagagCAGAGCTGCATAGTTCTTGT
ACTTAAGTTTGTTTTGAGATTTTACTGCTTTGGTTGGTTGGTTAGGTGTC
AGGCATATGATGGCTATGCAaatttccctccactgatgcaagttaaccTG
ATTTCACGGCACCTACTTTACAAATATCATAAATACTTCTTTAATGGAAA
ATAGCAAGCTATTgcacgacccacggcatggcccgaacatgttcgggcct
gttcggaccatgctcgggccacaaaaaagtgggccatgttcgggccatgc
cgtgggtcgtgcTATTGCAAGCTAAAATATATCCATAATCATactataaa
aatacaaaaactacaaaaaatatgaaaaattaagTCTAATACATCAACAC
ACTGACTAGGGATATtctgttttcaaaaaatgaaccaAACTTCTATGACA
CTGGTCATAGCACATTTGAAAATAGCTATCATCATGATAATAAGGGTCTG
TAACTGGTGGGATAATACGACCACCATCTTTTTCGGTATCATATCTACGA
ATCATGTTTATGTTGCTGTCTGATGAGGCTGGCTTTTTATGATCAACATT
CCTTTTATTCTCATCGTCAAATACAAAAATCcattgaaatcttgaaaagt
cATCCTTTGCAAGTTGGCGTACAGTACTTCTAAAGTTTTTGATGCCATGT
TTTTCTAAAGTGGAGAGTGTTCGATCATCAGGTTGCTCACCAACATGATA
ACGTGCAGTCCCACAactttcaatcaaccaatctGAAGTATCAGATCGGT
CTTTAACAAGGTGCTTGAAGATGCCTTCAGCCATAGGAGAGCGACAGATG
TTGCCCAAACACACAAAAAGTACAGATTTTGAAGATTTGTCAGCCGCCAT
TTTGACTTTATCAGAGCTTGTGCCGCCCTgttgtgttttgattttgaaaa
atcgaaagtgaaaccgg
Run BLAST on NCBI

transcript from alignment at sc0000462:170801..172930-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023823 ID=TCONS_00023823|Name=TCONS_00023823|organism=Clytia hemisphaerica|type=transcript|length=2130bp|location=Sequence derived from alignment at sc0000462:170801..172930- (Clytia hemisphaerica)
CCCCCATGTTCGGACATTTTCTGGAAGAGCCCAATTTATTAATGCGAAAG
TCAGGGTTTTCGAAAATTACCACGGCTCAATTTTGTTAAACAGTTGTAAT
CAAAAGGAGGGTAACCGATTCGCGTTTAAAATAACTTGAGTAGTTATATA
AGTGCAACAAGGTATTCAAAACAAATTGTAAACAGTGTTTACACGCTTTT
TCGTTTATAAGAATATATTTTATTAGATTATGTATGAAATTAGCCAAAAA
ATTAAGAATATATTCTAAGAACATCACCATCATGGAATTTGACAAAAGAT
CCTAAGAAAATCACTTTTTAATAGACCTTTTTTCAAAGAGGACGTCCTGT
TGAATAATTATGTAGTCCAGCCATATAAACAATGATAAAGCCATGCATAA
TTACTGTATCATGCATATTGTAATAATTATGCATGGTTTTAGCATTGTTT
TTCTGCTGGACTACATAATTATTCAACAGGGTGGCCACTTTGAAAAAAGG
TCTATTATTCAACATGACATTGCGATTAGATTAAAGGATTATCCTGAGAT
AGGGTAACTTGCATCAGTGGAAGCTAACATGCATAGCCCTCAAATGAATG
GCCTGGCTGGTCATTAAAATACAAAGTTAAATAAAAACAAACCTGATTTA
CAAAAACCATAAAAGTGATAGGTAGGTAGGTGCATAGGTAGGAAATTATG
TTTAATATCACTATTAAGTGATATCCACCGAAAAAGAAGAAGTCTTCGTT
TAATCTGCAATGAAGTGTTATAAAATTCCTTATAGAAATAAAAGACACAT
TCTCCTANTCTGATCGTCTTTTTAATCTGCAATGAATTGTTATAAAATTC
CTTATAGAAATAAAAGACACATTCTCCTACGAAGAGGTTTCAAAAAATGA
CGTAGAAAATAAAAAGTATGTCATTTTATCTTAACAATTTCGTAAACTAC
GTCACAACCACTGCCTTTTAGTTTTATGACTTGTTCTCACTCGTTTGGTT
TCTGTAATAAAAAGAAAGTTGTTATTGGGAACTTTGAACATGCTTAAAAT
TGAGGCACTTCCAATAACTGACCAAAAATACTCGCATAGCAAATATGAGA
TTCTAAAATGGTAGAGTAGAGCTGCAAGAGCAGAGCTGCATAGTTCTTGT
ACTTAAGTTTGTTTTGAGATTTTACTGCTTTGGTTGGTTGGTTAGGTGTC
AGGCATATGATGGCTATGCAAATTTCCCTCCACTGATGCAAGTTAACCTG
ATTTCACGGCACCTACTTTACAAATATCATAAATACTTCTTTAATGGAAA
ATAGCAAGCTATTGCACGACCCACGGCATGGCCCGAACATGTTCGGGCCT
GTTCGGACCATGCTCGGGCCACAAAAAAGTGGGCCATGTTCGGGCCATGC
CGTGGGTCGTGCTATTGCAAGCTAAAATATATCCATAATCATACTATAAA
AATACAAAAACTACAAAAAATATGAAAAATTAAGTCTAATACATCAACAC
ACTGACTAGGGATATTCTGTTTTCAAAAAATGAACCAAACTTCTATGACA
CTGGTCATAGCACATTTGAAAATAGCTATCATCATGATAATAAGGGTCTG
TAACTGGTGGGATAATACGACCAGCATCTTTTTCGGCATCATCATATCTA
CGAATCATGTTTATGTTGCTGTCTGATGNCGACCAGCCATCTTTTTCGGT
ATCATATCTACGAATCATGTTTATGTTGCTGTCTGATGAGGCTGGCTTTT
TATGATCAACATTCCTTTTATTCTCATCGTCAAATACAAAAATCCATTGA
AATCTTGAAAAGTCATCCTTTGCAAGTTGGCGTACAGTACTTCTAAAGTT
TTTGATGCCATGTTTTTCTAAAGTGGAGAGTGTTCGATCATCAGGTTGCT
CACCAACATGATAACGTGCAGTCCCACAACTTTCAATCAACCAATCTGAA
GTATCAGATCGGTCTTTAACAAGGTGCTTGAAGATGCCTTCAGCCATAGG
AGAGCGACAGATGTTGCCCAAACACACAAAAAGTACAGATTTTGAAGATT
TGTCAGCCGCCATTTTGACTTTATCAGAGCTTGTGCCGCCCTGTTGTGTT
TTGATTTTGAAAAATCGAAAGTGAAACCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013383XLOC_013383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023823-exon-sc0000462-1575043694:171308..172930TCONS_00023823-exon-sc0000462-1575043694:171308..172930Clytia hemisphaericaexon
TCONS_00023823-exon-sc0000462-1575043694:170801..171244TCONS_00023823-exon-sc0000462-1575043694:170801..171244Clytia hemisphaericaexon
TCONS_00023823-exon-sc0000462-1510915933:171308..172930TCONS_00023823-exon-sc0000462-1510915933:171308..172930Clytia hemisphaericaexon
TCONS_00023823-exon-sc0000462-1510915933:170801..171244TCONS_00023823-exon-sc0000462-1510915933:170801..171244Clytia hemisphaericaexon
TCONS_00023823-exon-sc0000462-1491911889:171308..172930TCONS_00023823-exon-sc0000462-1491911889:171308..172930Clytia hemisphaericaexon
TCONS_00023823-exon-sc0000462-1491911889:170801..171244TCONS_00023823-exon-sc0000462-1491911889:170801..171244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000462supercontigsc0000462:170801..172930 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.3016	62.3043	57.4216	59.5971	45.6062	36.0796	23.3534	24.4108	25.5676	25.3443	17.3229	16.0599	9.62174	8.18095	11.8274	11.917	37.3642	33.734	5.04314	8.03923	17.7896	17.8232	29.7037	26.7504	11.901	13.1012	21.9084	15.2923	20.4841	20.564
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017867Tyr_phospatase_low_mol_wt
IPR023485Ptyr_pPase_SF
Vocabulary: Molecular Function
TermDefinition
GO:0004725protein tyrosine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0004725 protein tyrosine phosphatase activity
Blast
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BLAST of TCONS_00023823 vs. Swiss-Prot (Human)
Match: PPAC (Low molecular weight phosphotyrosine protein phosphatase OS=Homo sapiens GN=ACP1 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.189e-33
Identity = 63/160 (39.38%), Postives = 101/160 (63.12%), Query Frame = -2 
Query: 1521 ADKSSKSVLFVCLGNICRSPMAEGIFKHLVKDRSDTSDWLIESCGTARYHVGEQPDDRTLSTLEKHGIKNFRSTVRQLAKDDFSRFQWIFVFDDENKRNVDHK--KPASSDSNINMIRRYDTEKDGGRIIPPVTDPYYHDDSYFQMCYDQCHRSLVHFLK 1994
            A++++KSVLFVCLGNICRSP+AE +F+ LV D++ + +W ++S  T+ Y +G  PD R  S +++HGI       RQ+ K+DF+ F +I   D+ N R+++ K  +  +  + I ++  YD +K   ++I  + DPYY +DS F+  Y QC R    FL+
Sbjct:    2 AEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIP-MSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQK---QLI--IEDPYYGNDSDFETVYQQCVRCCRAFLE 155
The following BLAST results are available for this feature:
BLAST of TCONS_00023823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPAC3.189e-3339.38Low molecular weight phosphotyrosine protein phosp... [more]
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