TCONS_00023834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023834
Unique NameTCONS_00023834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023834 ID=TCONS_00023834|Name=TCONS_00023834|organism=Clytia hemisphaerica|type=transcript|length=446bp
CATAGCCAAActaatctccgagcagattctcTGAAAGTCATGGCTTCTGC
CCTAGAATagagaatctgcccaggttgGCGCACCGCTTTGATCATTCTCA
TCCAGATTTGGGATTAATATTAAATGAGTTTTTGAGTGCACTCATTGGCT
AAAACAAAGCAATTTTACTAAAATGAAATGTCAATCATATACATAAAACA
ATACATGAAAATATCAGAACCTTTTCGTTTTCGCTTTTGTTTACAAGATA
ATAtcaaaatcttaaaacttttcatgtttgttttgttgaaatgtAACACG
TAAATTCAGCCCCAGTTTTCCCCAAGCAAAGTAATGATTTGGTATTTGGT
GTTTCGAATTCTTACTCTCTTTTTTAATTGGTAAGTAATAAGGAGAACTT
TTAAGCGGATATTATCGATTTCTCAACGCAACTCAAAAAAGGGGCC
Run BLAST on NCBI

transcript from alignment at sc0000462:173455..173900

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023834 ID=TCONS_00023834|Name=TCONS_00023834|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0000462:173455..173900 (Clytia hemisphaerica)
GGCCCCTTTTTTGAGTTGCGTTGAGAAATCGATAATATCCGCTTAAAAGT
TCTCCTTATTACTTACCAATTAAAAAAGAGAGTAAGAATTCGAAACACCA
AATACCAAATCATTACTTTGCTTGGGGAAAACTGGGGCTGAATTTACGTG
TTacatttcaacaaaacaaacatgaaaagttttaagattttgaTATTATC
TTGTAAACAAAAGCGAAAACGAAAAGGTTCTGATATTTTCATGTATTGTT
TTATGTATATGATTGACATTTCATTTTAGTAAAATTGCTTTGTTTTAGCC
AATGAGTGCACTCAAAAACTCATTTAATATTAATCCCAAATCTGGATGAG
AATGATCAAAGCGGTGCGCcaacctgggcagattctctATTCTAGGGCAG
AAGCCATGACTTTCAgagaatctgctcggagattagTTTGGCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013391XLOC_013391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023834-exon-sc0000462-1491911889:173455..173900TCONS_00023834-exon-sc0000462-1491911889:173455..173900Clytia hemisphaericaexon
TCONS_00023834-exon-sc0000462-1510915933:173455..173900TCONS_00023834-exon-sc0000462-1510915933:173455..173900Clytia hemisphaericaexon
TCONS_00023834-exon-sc0000462-1575043694:173455..173900TCONS_00023834-exon-sc0000462-1575043694:173455..173900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000462supercontigsc0000462:173455..173900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.169492	0	0	0	0	0.360351	0.378436	0	0.758306	0.0996961	0	0.413566	0	0.09122	0.449502	0.345544	0	0.333035	0.289467	0.423576	0.171637	0.156043	0	0.14344	0.205262	0	0	0.338561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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