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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023840 ID=TCONS_00023840|Name=TCONS_00023840|organism=Clytia hemisphaerica|type=transcript|length=967bp
gaaaatactcACAAGCTTCGGAAGATTCAGATATCTCCTCTTCCATTTCT
TGAAAATAGATTTATGGCAGAGTGAAATGATGCACAGTCAGACTTTCAGA
AGTGTAATCTGGCAATCTCGTCTCAAAACGAAAGTTCGTAAAAATTTTGG
TACCATTATGAATTTTAGGAAGCTCATTCAAAAAGTACTACCTTAGCTAA
TTCCAGGCATTCCAGGCCGTTTTGAAAACTTCCATACTTTTGAAGTACAC
TATCTTGAACTTTTTTGTTGACAAACAAAGCGAGTCTTCCcgctgttttt
attttatcggtCGTCATTATAGCCGGTTCTCCCCCTCCCCCTCTAGTTTT
AATGTCAAGATGGCGGCGAAGAAGTGCCTGAATTTTGAGATTGATTATTT
TGTTGACATCGCACGCCAAATTGCTTACAAAAGGTTCATACACAAAAAGT
ATTGGAATGTAGTTCTACATGCAGTCGCTTCAGTTTTAGTTGTGTGGTca
gcatttttcatttcatcgtgTTTTCTACCATATTTCTTGTGCCatctcaa
tttgatttttattttggttttgtgCATTGTTCAAGATGTCCATGCAGGGC
TTGCATCTCTGCTGGTTTACCCTGTATTGTATTACCATGCTTTATACGTC
ACTGATGCTACATTCTTACAAGTAGTAAGTTTAGCTATCCTTATTTACAT
CATACAAAATTTTGTGGGACAACAATGGATTGAATGTGTGGACCAAATCA
CGCAGAATACAATCAAAAGTGTGGATCCTAATTTCTTAGCTGCTGACTTG
TACAATGAAGtgtttctatcattctatcataacATGATCACGTTACTCAT
CCGCATGGATTTTCGAATGGACTTGCATGATCGATCGAATGTTGCCTTGA
GACAAGTTTTGGACCGAATGAAAAAGACACCATAGTTTACTGTGCCTCtg
taaaaatccaattttta Run BLAST on NCBI transcript from alignment at sc0000463:103115..110778+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023840 ID=TCONS_00023840|Name=TCONS_00023840|organism=Clytia hemisphaerica|type=transcript|length=7664bp|location=Sequence derived from alignment at sc0000463:103115..110778+ (Clytia hemisphaerica)
gaaaatactcACAAGCTTCGGAAGATTCAGATATCTCCTCTTCCATTTCT
TGAAAATAGATTTATGGCAGAGTGAAATGATGCACAGTCAGACTTTCAGA
AGTGTAATCTGGCAATCTCGTCTCAAAACGAAAGTTCGTAAAAATTTTGG
TACCATTATGAATTTTAGGAAGCTCATTCAAAAAGTACTACCTTAGCTAA
TTCCAGGCATTCCAGGCCGTTTTGAAAACTTCCATACTTTTGAAGTACAC
TATCTTGAACTTTTTTGTTGACAAACAAAGCGAGTCTTCCcgctgttttt
attttatcggtCGTCATTATAGCCGGTTCTCCCCCTCCCCCTCTAGTTTT
AATGTCAAGATGGCGGCGAAGAAGTGCCTGAATTTTGAGATTGATTATTT
TGTTGACATCGCACGCCAAATTGCTTACAAAAGGTTCATACACAAAAAGT
ATTGGTGAGTGTTCTTAATGTTTTTAGACCTTTTAGCTTTTCTGGTTTAT
TGGGTACCGTGAAgtcttgcatcagtggagggtaacttgcatgATGTGAA
GTCGGGTATAATATAGGTATATAAACTTAGTATATATATAAACTTGCATA
TCAGTCGatatcagtggaggctaacatgcatagccctcaaatgaatgacc
tggatggtccttaaaatacaaagttaaatcaaaacaaaaatggtatagta
gagctgcgagcggagctgcgtggttcatttgttttgaaattttgctgctt
tgttttgattggtcagtcatttcaGGGCTATGCATGAGCATgtttagcaa
ctccagaagatctttttcaaaatctatcctatcttttagagctttgaaaa
agaaagaaaatgaggggtcataggcctccagaggattagtggttgtaaag
atattcaaattttagtgtcaaaaatttgactaataatgtcaaaaaaaagg
ttaggaaaatagcttggaaaaattcgaaaaatatgtcaaaaaagaaaaaa
aagaaattttccagtcatgcttcttaaattttgcatatctctttttctag
tgtagctagagacctcaaatttggagggagaattcgttgatggtgttaaa
atattattatataaaaatacaactacacagctccgctcgcagctctgctc
taccatttttgttttgatttaattttgtattttaatgaccagtcaggtct
ttcatttgagggctatgcgtgttagcctccactgatgcaagttacccaat
ctcacggtagtatatttatcaaaataaggaaagatatatctttttttgaa
aaaagaagacattgcattgttttatttttgtttttgaagaaaatagcttg
gaaaaggttgaactGAGTCAagaaaggtggtaggacccattttcaagggg
cctctggaaatggaggaacaaaaacttatgagtaaagaataagtttttct
gaaaggagaaaccccacatgaaaagaaaatccatttcggcagaaataaaa
acttttttttggacattcccatgctaaagaagcaaaaaagttaaaaaaac
tacatgaaaatgaaagaactagaattagcgattgtgatttttgaattcct
caccctttttctgataaacatacaaagtttcagcctccaaattagatttt
cctccgtttccagacacatttgttcttcgatagttgcaaattttttttct
cccgtcggcaaacaattttcaaaatgttgtaaaaacgttcagcattttac
caatttgctgtctagcccgtgtccacagtgttatataccgctggaaagct
ttaagatcacgggctttcatttagtaaaaaccggaacgctttagcataca
tagaaaaaaagttccaagggttcaaagttcacggaaaaatgaaacatttg
ttttgacgtcaacgaaagttgcatgacttctggagtcgctagcATGTTAG
CctcctccactgatgcaagttacccgacttcacggtagccATCAGTGGGG
CCCCCCATCAgtttgcatgaatgcgtgaatgggcattttcggttgcatga
atgcgtgaaaattgaaaaaaaataagtgaATGCGtcaattgaaaaaactt
gcttgaacatgaaaattcactttgcgtgaatgcgtgaaccTAGGAACCta
ggctattttgtgcgtgaataagtgaattttcccttttttccactgATTGC
Agtgttcccgattttccaatgtttccctgatttttccctaaaattttccc
attttctgaaaaattggatTAATGCGTGAAACTCGatgaaaatttgcgtg
aatgcgtgaatttcgaaaaaaaatagcgtgattgcgtgaattgagggtcc
gctgggggagCCTCATCAGTCGCCattaaacttaaactcctatatcagga
ttagaaactaggctagtcttacctcttttatcttttcctttagggagggg
agccgtccatattcatttgacaacgcaaaacatcaaattgacgttatgag
tGGGaggggggttttcaaaagttaggtttgacgttataagaaatcaaagg
tatacctttttgtgaaaatcgcaGATACTTGTAACCACCAACCAcactat
actttataagaagaGGTCGAAAATATATTCATGTATGAAGAagaggataa
cgtcaatttgacgttatgcgttgtcaaatgaatatggacgggtccCCTTA
GGATTAGAAACGCGGCTAgacttaccgtcaactgctcNCGAAAACATATT
CGTGTATgaaatacatgaaaatttgctgctcgcataatcccattggttcg
cgctatgatatcattacatcatattttcattgtttgcgcggtcgagcgaa
ccacatcgcacaagttggcaaagaaggtggtacgCCTAAAGCACGGCACA
GCACGGACCTAGCGCCAAGTgaagcttttaatttctttttaaaataaaag
tcattagttaaaagaacacatacacgCACGGGTACAACCAAGTACGGACT
TTGCGATGGaacgggaaaactttgatgaaaaatggctacAACTTTTGGTA
TACATCAGTATCGCTTGACGTTATATGTGGGGGGTGGGGGGttcagagga
taacgtcaatttgacgttttgccttgtcaaatgaatatggacgggtcccc
ttacaacaatacaatgctgacaagttgacacaacacatgtgtacatgtac
attgacaagtaatccctgagagaagtttatattgaaatctgcaacaaaaa
cgaaagtggtctcttctactgattgcttcccagcgctcctttgcagctgt
ttatcaaatttccaccaatgacgTTGCGGATTTCAAacagcccttctttt
tggcacccgtggcctttcagtgccttgcatgacgggcggctgtaaaatcc
cacccttcatatattcgTTTCGATCCATGAtctgtggcttaggttttttc
tcatcttcaatttactgaagaaagaagaaagcggtgatttgatgcgagag
ttagattgtcaacaaagtgccgtaaaaaattattgaataaaagaagaaaa
gaacttttaaaaatcttaaataatttcattttgaagaataggtgcaaaaa
agtgaaacatagaaaagtttagatttggaaaattttcaatgtttagtttt
ttgcacaaacccctgtaactatgggcaagcaccccgttgctaagatgctg
gcttgaaatcgaaaatgaaaccactcaaaaaaaagaaagtaaaacgtATT
CGAAATCCAGTAATCTTGATATATGAGTCTATACTGGTCATCAAATGACT
AGctaactgaccaatcaaagcaatTAAAAACGCAGCTCCGTTCGCAGCTC
TACtctgccatttttgttttgatttaactttgtattttaaggaccagcca
tgagtcattcatttgagggctatgttaGCCtcaactgatgcaagttaccc
gatctcacggtataggTTATGTACAGATATTTGCTGTCGTGATCGGGGCC
CTCCCCCCACTAGCGGACGCAATCCTtacttagctttccagcggcgTATA
ACACTGAGGCTCGGAATTCTCAGGTTAGAAAAACCAAATTAGGAAACCGA
GTTAGCAAAAAGCCAAGTTAtgatagcaactccagaagatttttcaaatt
ttcttttttttttcaaaaccttatcttatcttgtagagctttgaaaaaga
aagaaaatgaggggtcataggcctccagaggataagtggttccggcaact
gctctaacttgggacgattggttgaaacatgatATCTGATCTGTATTTTT
ACTTGctgttaaatctctttaacaactaatttgttttgataactccacca
agtttatcaatcatactttttcgttcctcttagagtgcacagacactcgc
GTGTGCTCCACTTTAGATTGTTTTCATAATttaatttaaaagcctactcg
gtgcgaaagagaaattttgtattttttaaagccccgttcattaactcaaa
ttaaatgactttggaggttcggtgaaatggtggccgaattgccgtcccat
gttttatcagatagtcccaagttagagcagttgacggttgtaaagatatt
caaattttagtatcgaaaatttgactaaaaatgtcaaaaaaaagggttag
gaaaatagcttggaaaaattcgaaaaatgtgtcaaaaaaaaaaaaagaaa
aatttttcagtcTTACTTCTTTAATTtagcatatctctttttctagtgta
gctagagacctgaaatttggagggagaattctttgatggtgttagaattt
attattatataaaaatatttataaaatatttagtatatatcaaaataacg
aattatatctttttttgaaaaaagaagacattgcattgttttatttttgt
ttctgaaAAGAAAGTAGTATCCAGATAGCTTGGATAGCTTGGTTCTTTAA
CCCTAACctgttttgacattttttgtcaaattttcgacactaaaatttga
atatctttacaaccacttatcttCTGAAGTTTTGAccttcatgaattttt
ttttttaattgtatcAAAAAAGAGTACAGTATGCTACGTTTTTAAGAaca
catttctttgttttgtgattatttctttttgaattattaaccctttccgg
acgcacgggccactgggtggcccatgaatcgtgttcctatatgacgcacg
ggccaccgggtggcccatagccttgtaaaagattttaacagttttcgcaC
CAAAATACagtaacatggttttgaataatgattttgagataaatttcccg
taacctgcaaaaaaacgcttttccatatcttgtttacaacaaaaattaaa
aatgttcaatgtttgttgcaaatttactcaggctaaatctgtaagggaaa
aattgctcaaaaatttggacaaaaaatcactttactcagattcttggaaa
gcttatgacatgaaattttttttactgttcaaaaattcaattctctaaat
catatttaaagttcaaggcgtaaagcaaatgccttttactctatttcttt
attcaaagtcaaaaactttgtctttccgaaaaaaaatttgccgatttttc
ggtcacgtgaccaggtgtcagccatatttaaaaattcttttttggtaTTA
CTTAccgtgatatcttttatcaatcactttctattgcaactttagtgaag
ccagtcaaaaactgagtttttgtttgcgtcatatagcggtgaaatcatgc
gtccggaaagggttaagtttgatcttttattgttttaatcTTCTCAAGGT
ACTTTGTTggctttgtgtaaacttgcttatgttttgcatattttctaACT
AAAttcaaccacggctttttcgttcctctatttttgcatataATCTTTTA
TGGGGGATGGAAAAGCTTTGATCACTCTCAATTATtcagaaaaacacaag
aaaatctAAATCTGTTGTTACACATGCAACAGTCGGATTGTCTTTTCTTT
GAAATGTGACAACTCAACTGAGGAACTTGGATGCCtaatcaattttcaaa
tatcttttttttttcactaaaaggacctaaaagaaaaaattgattaGACT
CATTAACTCCCAAGTTTAATAATTTTGTTAGCATGAtttaaaatgcaaaa
tttttgagtttctttttacCGTTAGAAAGTTCACTGCACCTTTGGAATAC
TAATAGTATTATTTCTTCAACGTTTTGCTATAACtactctaaaaaagatt
aatttcttatgttttttatctcttttacaACCAAATAGAGTGTAACAGTA
AGAATAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAACAGAGGGGGAGTTTTTCTCCATTGTAG
AGTCAAAATTGTGAGAAATTAAAGATTGAATAACTcaatgaataaaagac
attatgaagtggttctttttttgtttgatcacatttttcttcctctttga
tgtttcgaaaaaaaatctcagggTTAATTCCAAACATTAATTCCCCTTTA
ATGGATGCATTGTACTGCTTTTGTGCttttttggtttggttttgtgAAGA
AATGGTCTGTTATctcattaaatgttttttcaatTTAAGGTGTATCTTAA
TTAgaccatttttttttatttttcatttattcagGAATGTAGTTCTACAT
GCAGTCGCTTCAGTTTTAGTTGTGTGGTcagcatttttcatttcatcgtg
TTTTCTACCATATTTCTTGTGCCatctcaatttgatttttattttggttt
tgtgCATTGTTCAAGATGTCCATGCAGGGGTATGACTATCATTTTCTCTC
GTGTTTAAAATTCTAGAAACTGTTTAAAATGcaacatgttttttctttta
taagcataacgtttataagcatagtGATAGGAAGGCTCAGTTTTTGGCTC
TTTCGTTTGAGAacctagaatgctaagcataatgcaaacctgatataggg
acagacacttgcttataaaaaaacatataattgAGTTAAAAACTTATTAT
TTATTTTGCTCTGTGTGATATATTTGTAAACATCtcacaaataaaaatat
ttaaatcatAAATAGTTTTGTGGTTACTGTGACTTAGTAATGGCCAGAAG
ACATAGGAAAATTGAATCAAATTTGAGTTTCATAATTCGTTTCCAGCTTG
CATCTCTGCTGGTTTACCCTGTATTGTATTACCATGCTTTATACGTCACT
GATGCTACATTCTTACAAGTAGTAAGTTTAGCTATCCTTATTTACATCAT
ACAAAATTTTGTGGGACAACAATGGATTGAATGTGTGGACCAAATCACGC
AGAATACAATCAAAAGTGTGGATCCTAATTTCTTAGCTGCTGACTTGTAC
AATGAAGtgtttctatcattctatcataacATGATCACGTTACTCATCCG
CATGGATTTTCGAATGGACTTGCATGATCGATCGAATGTTGCCTTGAGAC
AAGTTTTGGACCGAATGAAAAAGACACCATAGTTTACTGTGCCTCtgtaa
aaatccaattttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023840-exon-sc0000463-1491911889:103115..103568 | TCONS_00023840-exon-sc0000463-1491911889:103115..103568 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1510915933:103115..103568 | TCONS_00023840-exon-sc0000463-1510915933:103115..103568 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1575043694:103115..103568 | TCONS_00023840-exon-sc0000463-1575043694:103115..103568 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1491911889:109899..110043 | TCONS_00023840-exon-sc0000463-1491911889:109899..110043 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1510915933:109899..110043 | TCONS_00023840-exon-sc0000463-1510915933:109899..110043 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1575043694:109899..110043 | TCONS_00023840-exon-sc0000463-1575043694:109899..110043 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1491911889:110411..110778 | TCONS_00023840-exon-sc0000463-1491911889:110411..110778 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1510915933:110411..110778 | TCONS_00023840-exon-sc0000463-1510915933:110411..110778 | Clytia hemisphaerica | exon |
| TCONS_00023840-exon-sc0000463-1575043694:110411..110778 | TCONS_00023840-exon-sc0000463-1575043694:110411..110778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000463 | supercontig | sc0000463:103115..110778 + |
Blast
The following BLAST results are available for this feature:
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