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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023856 ID=TCONS_00023856|Name=TCONS_00023856|organism=Clytia hemisphaerica|type=transcript|length=2477bpRun BLAST on NCBI transcript from alignment at sc0000463:203226..213081- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023856 ID=TCONS_00023856|Name=TCONS_00023856|organism=Clytia hemisphaerica|type=transcript|length=9856bp|location=Sequence derived from alignment at sc0000463:203226..213081- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023856 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 1.156e-75 Identity = 203/750 (27.07%), Postives = 355/750 (47.33%), Query Frame = 1
Query: 271 CDESMAIGAAVDL-YNAGVKAMIGPACSVCCLSAGLLSTNKKIPLISYSCSSIELSNKDNYPYFARTKP-FARTGPWAPKALTAITKRMKWRQVCIIERVH------EIYTLVSENLRQEFLSQNYTVHRERFYDEDTTFQEKEEYLANLQDKCRVFFIVTDKGALNEFLIHAYHRGLLTKEKGFAFLTIDFKISFFRVLPEHNLPGNTDDEKLDFLRKDILQGLITVSAVYPSEQDNPQFTTFKQDVESMKNNAPWDVSPYNESLPLKNPNAINSAYTYDAVWLVAMAMDRILKENPNSTLNDSRLIYETVLNTTFDGYTGPLHLDAQGDRIPDFHISNV--VDGTVVNLYEYN----PLNAVGELDANITFVFPGNTTQIPLDVPVCGFHNEFCIVEEDKFDYLAIYIAVPMFFIL-IIFIGLYVHNKRKYEMSMLCKGLVIDSKEISYGGENSSFRSRISAMSTMTRDSGFINLRGL-GK----SKVVIWRSEKAFVKTIKKCKVDLTKMLLIKLKRLKDINHTNVNPFLGVFQQGPDFHVLWNVCQKGSLQDVLQNDDIECDWTFRLSFVNDIAKGLNEIFKNGGV--HGNLNSSNCLIDNRWVCKISNFGLTHFKSGIKTLPDNSYEAYKKQFWKAPE--RISNHGLAPSKEGDIYSYGIILYEISVRDDPFHYDMEQSDLQPRDIIEMVRSKGNDEKPFRPTIMEGNGAPGDYNNLMRRCWEQDPEERCQIKDITKTVQKLNRD 2448
C ++ A AAVDL + +GP C G + + ++PL++ ++ KD Y R P +A+ G + + A+ +R+ W + ++ + + LV + N TV F ++D + + L + K RV +I + A ++ A GL ++ F L I + P P D + D + Q ++ P DNP++ F + ++ + +N ++ N I +++ +D + L A+ L T+ D I + + N +F G TG L +D+ GDR DF + ++ +G + YN L AV N +P P D+P CGF NE +D L + V +L I+ + +++ K + E + + + +++ RS S ++ R S + +L G+ +K ++ VK + + +++LT+ +L +LK ++D+ + ++ F+G P+ +L C +GSLQD+L+N+ I DW FR S NDI KG+ NG + HGNL SSNC++D R+V KI+++GL F+ P+ + Y K+ W APE R+++ + S+ GD+YS+GIIL EI++R FH +E DL P++IIE V ++G ++ PFRP++ + + LM+RCW +DP+ER + I T++K NR+
Sbjct: 92 CSDTAAPLAAVDLKWEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPALGFGVKDEYALTTRAGPSYAKLGDF----VAALHRRLGWERQALMLYAYRPGDEEHCFFLVEGLFMRVRDRLNITVDHLEFAEDDLSHYTR--LLRTMPRKGRVIYICSSPDAFRTLMLLALEAGLCGEDYVFFHLDIFGQSLQGGQGPAPRRPWERGDGQ-DVSARQAFQAAKIITYKDP---DNPEYLEFLKQLKHLAYEQ------FNFTMEDGLVNTIPASF-HDGLLLYIQAVTETLAHG--GTVTDGENITQRMWNRSFQGVTGYLKIDSSGDRETDFSLWDMDPENGAFRVVLNYNGTSQELVAVSGRKLNWPLGYP------PPDIPKCGFDNEDPACNQDHLSTLEVLALVGSLSLLGILIVSFFIYRKMQLEKELASELWRVRWEDVEPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGM-LFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRD---LDPEQGHTVYAKKLWTAPELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVFH--VEGLDLSPKEIIERV-TRG-EQPPFRPSLALQSHLE-ELGLLMQRCWAEDPQERPPFQQIRLTLRKFNRE 807 The following BLAST results are available for this feature:
BLAST of TCONS_00023856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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