TCONS_00023858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023858
Unique NameTCONS_00023858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023858 ID=TCONS_00023858|Name=TCONS_00023858|organism=Clytia hemisphaerica|type=transcript|length=813bp
AAACAAAAGTCTTTGTTTCGTGATTCAGAGTGAACTTCTCTACATGTGCC
ACAGGCTTTAAGTTTTTATTGTCAATCGTGGGAGGATGTCCATAGCACtt
cataaaaataatatttcgattatttcaaaaaatgggCAAGGCTTCATAGT
GGCAATCAATCAAACATTAAAAATATTTGACCAAAAGGAATGCACTACTT
TATTATCAAAAGAGAGTGAGCACATCAGGTAAGCATTGCTGCAGTTTTTT
GTTATTATTCTTTGTAGTCGAAAGTTAtggaaagaaaattgataaaattg
ataTTAGAAGTGAGGGAACGTATTAATGTGTCAAGCCCGTTTAAAGGTAT
TTTCACAAGCATCCTGGCCAACAAAAGACTAAACTAATTTTCTAGACGAA
TTTGGCTGAACTAGGTCCAGTGGAACAGTGGATAAATTTATAGAAGAATT
GGACCTTTCTTACTAGAAATATCATTTGAAAGATTTGAATGAAGATTGAC
TTTTGTAGGGCTAAAAACTACGAGCTCCTCTCTATCACCACCCTGCTatc
caatcaaaagttaaacTGATATCTTTGCAATAACGATGATTTAGCTTGGA
AACCACTCTCGAGAGAACAAATTTGTCGTTCCCTATGAaattatttgtcg
ttcttttttgatGTTCCGAAGCAAAATTCAGTGGTGCCCTTAATACTTTT
TTCATAGCTTTAACACTTGAATAATGataatcgaccgccggaggcggttt
ctttcatagtggtacgctaatctcgttttgccttggctcattactttgtc
taccatttacttt
Run BLAST on NCBI

transcript from alignment at sc0000463:230636..231448-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023858 ID=TCONS_00023858|Name=TCONS_00023858|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at sc0000463:230636..231448- (Clytia hemisphaerica)
AAACAAAAGTCTTTGTTTCGTGATTCAGAGTGAACTTCTCTACATGTGCC
ACAGGCTTTAAGTTTTTATTGTCAATCGTGGGAGGATGTCCATAGCACTT
CATAAAAATAATATTTCGATTATTTCAAAAAATGGGCAAGGCTTCATAGT
GGCAATCAATCAAACATTAAAAATATTTGACCAAAAGGAATGCACTACTT
TATTATCAAAAGAGAGTGAGCACATCAGGTAAGCATTGCTGCAGTTTTTT
GTTATTATTCTTTGTAGTCGAAAGTTATGGAAAGAAAATTGATAAAATTG
ATATTAGAAGTGAGGGAACGTATTAATGTGTCAAGCCCGTTTAAAGGTAT
TTTCACAAGCATCCTGGCCAACAAAAGACTAAACTAATTTTCTAGACGAA
TTTGGCTGAACTAGGTCCAGTGGAACAGTGGATAAATTTATAGAAGAATT
GGACCTTTCTTACTAGAAATATCATTTGAAAGATTTGAATGAAGATTGAC
TTTTGTAGGGCTAAAAACTACGAGCTCCTCTCTATCACCACCCTGCTATC
CAATCAAAAGTTAAACTGATATCTTTGCAATAACGATGATTTAGCTTGGA
AACCACTCTCGAGAGAACAAATTTGTCGTTCCCTATGAAATTATTTGTCG
TTCTTTTTTGATGTTCCGAAGCAAAATTCAGTGGTGCCCTTAATACTTTT
TTCATAGCTTTAACACTTGAATAATGATAATCGACCGCCGGAGGCGGTTT
CTTTCATAGTGGTACGCTAATCTCGTTTTGCCTTGGCTCATTACTTTGTC
TACCATTTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013405XLOC_013405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023858-exon-sc0000463-1575043694:230636..231448TCONS_00023858-exon-sc0000463-1575043694:230636..231448Clytia hemisphaericaexon
TCONS_00023858-exon-sc0000463-1510915933:230636..231448TCONS_00023858-exon-sc0000463-1510915933:230636..231448Clytia hemisphaericaexon
TCONS_00023858-exon-sc0000463-1491911889:230636..231448TCONS_00023858-exon-sc0000463-1491911889:230636..231448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000463supercontigsc0000463:230636..231448 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0573059	0	0	0	0	0.655391	1.30396	0.218596	0.781691	0.727465	0.16638	1.11055	1.08419	0.740072	0.848182	0	0.0463798	0.149126	0.0743348	0.359296	0.199354	0	0.0616307	0	0	0.404628	0.468732	0.988665	1.43407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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