TCONS_00023871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023871
Unique NameTCONS_00023871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023871 ID=TCONS_00023871|Name=TCONS_00023871|organism=Clytia hemisphaerica|type=transcript|length=1188bp
ACCCTCACCATCAACTCCCACTGTATTTATTTTCAGATGTCCCCCATCTC
cttaaaacaacaagaaactgCTTTGAAAACTCCAAATGGAACAAGAATAC
AAGAAATTAGCATCTCGATGGCCAAGATATCTCATGGCAACATATCGTGA
AGGTAGTTGAGGATGACATGACATTGATAACTAACTCAGGAGGACTAATC
TCAGCCAAAACAAACATCGCTGGATTACGTAAGCTCCATTTAACTGACGA
GCACATCAATTTAACACCACGTTCTCGAATGACAGTTAAGCTTGCTGCTC
AGGTACTTAGTCAGAAGACCGCACTCGCTTTGGAAAGTCAAGGTCGCCAC
GACACTAAGAGGACAATCGAGTTTGTCAAGATGTTCGACAGAGTTTTTGA
TTGTCTAAATGTTTCCAGATTCAGCAAAGACAGAAATGGAAAGGCCGAGC
TTGCTCACTATGTAGCAAACGACTGGCGATTTTCTttcCTGAAAGACGAC
TTCCTTGACAATTACTTGGAAAGATGGTACGAGCAAGTCGATGCAAAACC
AATCAATAAAGAAGAGAAGCTCAAACAACTTTTAAGTGCTCCAACAAGAC
TCGGCTGGAAAATGACTGttttctcTTTCGTCAAGCTAGCAGAAGAGTTA
TTGGAGATTGATGGTGTTAAATTTTTACTATCGGAAAAATTCTCACAAGA
CCCCGTTGAAGAACATTTTGGTCGCCNGCAGAAGAGTTATTGGAGATTGA
TGGTGTTAAATTTTTATTATCGGAAAAATTCTCACAAGACCCTGTTGAAG
AACATTTTGGTCGCCAACGAAGACAAGGAGGAAATAACGATAATCCGAGG
CTTTTGGAGTTTTCCCGCCAAGAAATTGCTCTAAATCTTATGAAATCAGA
TCTTATCCAGGATTTAAACGGAAATGCAAGGGCTGCGGATCGAGGCGTTC
CAAAATTTGACATTCATGATACAACACCACTTCCTACGAAAAAACTGTCC
TAATTGATTAGATTGGACTATCTAGAGTATTTAGAGTAAGAAGTGAAAAT
GTTTGATAGGATTTTTAAGGATATTTGTAGTGAGTTAAGATTTGTCATGT
AGAAGTTTTAAAATCAATACTTTTGGATAAAATTTACAACTTTTCACTAG
TTCTTTTATAAGCTCAAGGCATACAACTTACAGGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00023871-protein

>TCONS_00023871-protein ID=TCONS_00023871-protein|Name=TCONS_00023871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MTLITNSGGLISAKTNIAGLRKLHLTDEHINLTPRSRMTVKLAAQVLSQK
TALALESQGRHDTKRTIEFVKMFDRVFDCLNVSRFSKDRNGKAELAHYVA
NDWRFSFLKDDFLDNYLERWYEQVDAKPINKEEKLKQLLSAPTRLGWKMT
VFSFVKLAEELLEIDGVKFLLSEKFSQDPVEEHFGRXQKSYWRLMVLNFY
YRKNSHKTLLKNILVANEDKEEITIIRGFWSFPAKKLL
Run BLAST on NCBI

transcript from alignment at sc0000464:84805..86755+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023871 ID=TCONS_00023871|Name=TCONS_00023871|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at sc0000464:84805..86755+ (Clytia hemisphaerica)
ACCCTCACCATCAACTCCCACTGTATTTATTTTCAGATGTCCCCCATCTC
cttaaaacaacaagaaactgCTTTGAAAACTCCAAATGGAACAAGAATAC
AAGAAATTAGCATGTAAGTTCTTTTCAAATTATTGTAGGTTTGCTAATTT
ACATTACAGTATTACAGtacttttattttctttcagtttttgaaTTCCGG
GTTAACATTATCCAGTCTTAAAGAGCTATATCTACTTGAAGAGCAGCATA
ATGAATATAGAAAAGTGCATAAGCATAATACCTTGTTTATTTTTAAGCTC
GATGGCCAAGATATCTCATGGCAACATATCGTGAAGGTAGTTGAGGATGA
CATGACATTGATAACTAACTCAGGAGGACTAATCTCAGCCAAAACAAACA
TCGCTGGATTACGTAAGCTCCATTTAACTGACGAGCACATCAATTTAACA
CCACGTTCTCGAATGACAGTTAAGCTTGCTGCTCAGGTACGTGTCAATCT
TTTTAGAGATTGGAAACTTTTTTCACTCATTTGCCTGGTTTACTTgtcat
tcttaaattttttgactgttttCAATCCTCTGATATCATATTCAATAATG
ATGGAAATTAAAggcatattttttataagcattttcgTTCTTTCCCTCAG
GTACTTAGTCAGAAGACCGCACTCGCTTTGGAAAGTCAAGGTCGCCACGA
CACTAAGAGGACAATCGAGTTTGTCAAGATGTTCGACAGAGTTTTTGATT
GTCTAAATGTTTCCAGATTCAGCAAAGACAGAAATGGAAAGGCCGAGCTT
GCTCACTATGTAGCAAACGACTGGCGATTTTCTGTAAGTATACAACTCAA
AGTAATGTTTTACTACAGTAACAGTAAGGCTTTTGCTTGCCTCATTTTGC
CAAGGAGCTTGATTATGTTAAGAAAACCATTTTAGAGTAATGAATCAGTT
GAAAAGAAATAACATCGAATACTaattaaagtttgaagaaatgaaataaa
ttttttttctagttcCTGAAAGACGACTTCCTTGACAATTACTTGGAAAG
ATGGTACGAGCAAGTCGATGCAAAACCAATCAATAAAGAAGAGAAGCTCA
AACAACTTTTAAGTGCTCCAACAAGACTCGGCTGGAAAATGACTGGTAAG
TATTCATGCATTCCTGTACTCGACCTCTTACGTGTATTTCAAGTTTTCTT
GGATGTATGTATTGTATTAGTATATTGGGCAGGTGCGGACTTACTGTAAA
AATCTTACAGCTTATCGATTTTAGAGGGCTTGAAAGGGCTCTGCTGGTAT
GTAAAAGTTTTTGTATTAACTATATAGCATGGTTGTGAGTCAAAAGGtaa
aataataacatttttcttccttctttttcagttttctcTTTCGTCAAGCT
AGCAGAAGAGTTATTGGAGATTGATGGTGTTAAATTTTTACTATCGGAAA
AATTCTCACAAGACCCCGTTGAAGAACATTTTGGTCGCCNGCAGAAGAGT
TATTGGAGATTGATGGTGTTAAATTTTTATTATCGGAAAAATTCTCACAA
GACCCTGTTGAAGAACATTTTGGTCGCCAACGAAGACAAGGAGGAAATAA
CGATAATCCGAGGCTTTTGGAGTTTTCCCGCCAAGAAATTGCTCTAAATC
TTATGAAATCAGATCTTATCCAGGATTTAAACGGAAATGCAAGGGCTGCG
GATCGAGGCGTTCCAAAATTTGACATTCATGATACAACACCACTTCCTAC
GAAAAAACTGTCCTAATTGATTAGATTGGACTATCTAGAGTATTTAGAGT
AAGAAGTGAAAATGTTTGATAGGATTTTTAAGGATATTTGTAGTGAGTTA
AGATTTGTCATGTAGAAGTTTTAAAATCAATACTTTTGGATAAAATTTAC
AACTTTTCACTAGTTCTTTTATAAGCTCAAGGCATACAACTTACAGGTCA
A

Coding sequence (CDS) from alignment at sc0000464:84805..86755+

>TCONS_00023871 ID=TCONS_00023871|Name=TCONS_00023871|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0000464:84805..86755+ (Clytia hemisphaerica)
ATGACATTGATAACTAACTCAGGAGGACTAATCTCAGCCAAAACAAACAT
CGCTGGATTACGTAAGCTCCATTTAACTGACGAGCACATCAATTTAACAC
CACGTTCTCGAATGACAGTTAAGCTTGCTGCTCAGGTACTTAGTCAGAAG
ACCGCACTCGCTTTGGAAAGTCAAGGTCGCCACGACACTAAGAGGACAAT
CGAGTTTGTCAAGATGTTCGACAGAGTTTTTGATTGTCTAAATGTTTCCA
GATTCAGCAAAGACAGAAATGGAAAGGCCGAGCTTGCTCACTATGTAGCA
AACGACTGGCGATTTTCTttcCTGAAAGACGACTTCCTTGACAATTACTT
GGAAAGATGGTACGAGCAAGTCGATGCAAAACCAATCAATAAAGAAGAGA
AGCTCAAACAACTTTTAAGTGCTCCAACAAGACTCGGCTGGAAAATGACT
GttttctcTTTCGTCAAGCTAGCAGAAGAGTTATTGGAGATTGATGGTGT
TAAATTTTTACTATCGGAAAAATTCTCACAAGACCCCGTTGAAGAACATT
TTGGTCGCCNGCAGAAGAGTTATTGGAGATTGATGGTGTTAAATTTTTAT
TATCGGAAAAATTCTCACAAGACCCTGTTGAAGAACATTTTGGTCGCCAA
CGAAGACAAGGAGGAAATAACGATAATCCGAGGCTTTTGGAGTTTTCCCG
CCAAGAAATTGCTCTAAATGACATTGATAACTAACTCAGGAGGACTAATC
TCAGCCAAAACAAACATCGCTGGATTACGTAAGCTCCATTTAACTGACGA
GCACATCAATTTAACACCACGTTCTCGAATGACAGTTAAGCTTGCTGCTC
AGGTACTTAGTCAGAAGACCGCACTCGCTTTGGAAAGTCAAGGTCGCCAC
GACACTAAGAGGACAATCGAGTTTGTCAAGATGTTCGACAGAGTTTTTGA
TTGTCTAAATGTTTCCAGATTCAGCAAAGACAGAAATGGAAAGGCCGAGC
TTGCTCACTATGTAGCAAACGACTGGCGATTTTCTttcCTGAAAGACGAC
TTCCTTGACAATTACTTGGAAAGATGGTACGAGCAAGTCGATGCAAAACC
AATCAATAAAGAAGAGAAGCTCAAACAACTTTTAAGTGCTCCAACAAGAC
TCGGCTGGAAAATGACTGttttctcTTTCGTCAAGCTAGCAGAAGAGTTA
TTGGAGATTGATGGTGTTAAATTTTTACTATCGGAAAAATTCTCACAAGA
CCCCGTTGAAGAACATTTTGGTCGCCNGCAGAAGAGTTATTGGAGATTGA
TGGTGTTAAATTTTTATTATCGGAAAAATTCTCACAAGACCCTGTTGAAG
AACATTTTGGTCGCCAACGAAGACAAGGAGGAAATAACGATAATCCGAGG
CTTTTGGAGTTTTCCCGCCAAGAAATTGCTCTAAATGACATTGATAACTA
ACTCAGGAGGACTAATCTCAGCCAAAACAAACATCGCTGGATTACGTAAG
CTCCATTTAACTGACGAGCACATCAATTTAACACCACGTTCTCGAATGAC
AGTTAAGCTTGCTGCTCAGGTACTTAGTCAGAAGACCGCACTCGCTTTGG
AAAGTCAAGGTCGCCACGACACTAAGAGGACAATCGAGTTTGTCAAGATG
TTCGACAGAGTTTTTGATTGTCTAAATGTTTCCAGATTCAGCAAAGACAG
AAATGGAAAGGCCGAGCTTGCTCACTATGTAGCAAACGACTGGCGATTTT
CTttcCTGAAAGACGACTTCCTTGACAATTACTTGGAAAGATGGTACGAG
CAAGTCGATGCAAAACCAATCAATAAAGAAGAGAAGCTCAAACAACTTTT
AAGTGCTCCAACAAGACTCGGCTGGAAAATGACTGttttctcTTTCGTCA
AGCTAGCAGAAGAGTTATTGGAGATTGATGGTGTTAAATTTTTACTATCG
GAAAAATTCTCACAAGACCCCGTTGAAGAACATTTTGGTCGCCNGCAGAA
GAGTTATTGGAGATTGATGGTGTTAAATTTTTATTATCGGAAAAATTCTC
ACAAGACCCTGTTGAAGAACATTTTGGTCGCCAACGAAGACAAGGAGGAA
ATAACGATAATCCGAGGCTTTTGGAGTTTTCCCGCCAAGAAATTGCTCTA
AATGACATTGATAACTAACTCAGGAGGACTAATCTCAGCCAAAACAAACA
TCGCTGGATTACGTAAGCTCCATTTAACTGACGAGCACATCAATTTAACA
CCACGTTCTCGAATGACAGTTAAGCTTGCTGCTCAGGTACTTAGTCAGAA
GACCGCACTCGCTTTGGAAAGTCAAGGTCGCCACGACACTAAGAGGACAA
TCGAGTTTGTCAAGATGTTCGACAGAGTTTTTGATTGTCTAAATGTTTCC
AGATTCAGCAAAGACAGAAATGGAAAGGCCGAGCTTGCTCACTATGTAGC
AAACGACTGGCGATTTTCTttcCTGAAAGACGACTTCCTTGACAATTACT
TGGAAAGATGGTACGAGCAAGTCGATGCAAAACCAATCAATAAAGAAGAG
AAGCTCAAACAACTTTTAAGTGCTCCAACAAGACTCGGCTGGAAAATGAC
TGttttctcTTTCGTCAAGCTAGCAGAAGAGTTATTGGAGATTGATGGTG
TTAAATTTTTACTATCGGAAAAATTCTCACAAGACCCCGTTGAAGAACAT
TTTGGTCGCCNGCAGAAGAGTTATTGGAGATTGATGGTGTTAAATTTTTA
TTATCGGAAAAATTCTCACAAGACCCTGTTGAAGAACATTTTGGTCGCCA
ACGAAGACAAGGAGGAAATAACGATAATCCGAGGCTTTTGGAGTTTTCCC
GCCAAGAAATTGCTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013416XLOC_013416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023871-exon-sc0000464-1491911889:84805..84917TCONS_00023871-exon-sc0000464-1491911889:84805..84917Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1510915933:84805..84917TCONS_00023871-exon-sc0000464-1510915933:84805..84917Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1575043694:84805..84917TCONS_00023871-exon-sc0000464-1575043694:84805..84917Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1491911889:85102..85290TCONS_00023871-exon-sc0000464-1491911889:85102..85290Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1510915933:85102..85290TCONS_00023871-exon-sc0000464-1510915933:85102..85290Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1575043694:85102..85290TCONS_00023871-exon-sc0000464-1575043694:85102..85290Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1491911889:85455..85637TCONS_00023871-exon-sc0000464-1491911889:85455..85637Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1510915933:85455..85637TCONS_00023871-exon-sc0000464-1510915933:85455..85637Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1575043694:85455..85637TCONS_00023871-exon-sc0000464-1575043694:85455..85637Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1491911889:85817..85949TCONS_00023871-exon-sc0000464-1491911889:85817..85949Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1510915933:85817..85949TCONS_00023871-exon-sc0000464-1510915933:85817..85949Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1575043694:85817..85949TCONS_00023871-exon-sc0000464-1575043694:85817..85949Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1491911889:86186..86755TCONS_00023871-exon-sc0000464-1491911889:86186..86755Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1510915933:86186..86755TCONS_00023871-exon-sc0000464-1510915933:86186..86755Clytia hemisphaericaexon
TCONS_00023871-exon-sc0000464-1575043694:86186..86755TCONS_00023871-exon-sc0000464-1575043694:86186..86755Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023871-proteinTCONS_00023871-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:84805..86755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0353385	0	0	0	0	0	0	0.152689	0.0756517	0	0.0965392	0.096405	0.0500588	0.617327	0.574155	0.435269	0.724972	0.192613	0.564356	0.315339	0.461434	0.290855	0.755511	0.0389079	0.138898	0.0496905	0.106062	0.804444	0.491761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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