TCONS_00023878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023878
Unique NameTCONS_00023878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023878 ID=TCONS_00023878|Name=TCONS_00023878|organism=Clytia hemisphaerica|type=transcript|length=727bp
AAACAGCTGGGCTTCGAGACAGATAAGGCCAAGGATGTTTTCCGGAAGGA
CAAAGATCACCACAAAGAATGGTGCTTTCTGGAGCTTATGTTTTACGCTG
GTGTTGACGAACTACTTTCACTCTACGTTAAATTGTTTGCAACTGACGTT
TCACTCACTGGTTTTTGGAATCGGTGCCAGGCTCAATCTCCAAATCTAAA
GTACATGGCGAACATGTGCCTGAATCATCTTTTTGCGATGATGTTATTTA
GAGTTTCGGTTCGTAGAAACTGCTTTGAAGGCATTGAAATGGCTATGGAG
CAGTTAGAGGGTTTGTTTTTTTACAAGACACCATCCAATCTATCAACGAC
TGCTAGTGTATAATCGTATCGTTCTCCAGCAAATGCCGGATGAGATGAAG
GATTTGCTGAAAGTAGCCTATACAACGTCTGTCACTGGAAATCATGATTC
TTGCCGAGGTAGTGAGTACGCATACAGAAAAGCTACTATTCAATATGCCT
ATCCATTGGTATTTCAAATTCTGTTTATGAAATCGAAATACCTATAGTTG
TAGTTATCCTATACGCCTTAAACCAACATCTACATTATAATACAATGTTG
GAATATAAAACACTGGCCACCTCGTTTAATTCTAAGGTGATGCGTGTCTC
GAGGAGATGAACAAAGAGATTAAATTCTGGTTGAACAATGTTGGTATACC
TTCAAAGACAAACTGGACTGAAACTAT
Run BLAST on NCBI

protein sequence of TCONS_00023878-protein

>TCONS_00023878-protein ID=TCONS_00023878-protein|Name=TCONS_00023878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
KQLGFETDKAKDVFRKDKDHHKEWCFLELMFYAGVDELLSLYVKLFATDV
SLTGFWNRCQAQSPNLKYMANMCLNHLFAMMLFRVSVRRNCFEGIEMAME
QLEGLFFYKTPSNLSTTASV
Run BLAST on NCBI

transcript from alignment at sc0000464:53541..54444-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023878 ID=TCONS_00023878|Name=TCONS_00023878|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at sc0000464:53541..54444- (Clytia hemisphaerica)
AAACAGCTGGGCTTCGAGACAGATAAGGCCAAGGATGTTTTCCGGAAGGA
CAAAGATCACCACAAAGAATGGTGCTTTCTGGAGCTTATGTTTTACGCTG
GTGTTGACGAACTACTTTCACTCTACGTTAAATTGTTTGCAACTGACGTT
TCACTCACTGGTTTTTGGAATCGGTGCCAGGCTCAATCTCCAAATCTAAA
GTACATGGCGAACATGTGCCTGAATCATCTTTTTGCGATGATGTTATTTA
GAGTTTCGGTTCGTAGAAACTGCTTTGAAGGTAATTTCAAGACATCATTG
GTTGTTCTCATGACACTATATACTAAAAATGTGTCGTACAGTCCTAAATG
AGATTTTTTCAAGGGCTTGATAGTTATACTTCACTTCGTGCATTTTACTA
TGAGATATGAGAAGTTTGCGAAAACCAAAATCAATATTGTAGGTTACATT
TTTTAAGGCATTGAAATGGCTATGGAGCAGTTAGAGGGTTTGTTTTTTTA
CAAGACACCATCCAATCTATCAACGACTGCTAGTGTATAATCGTATCGTT
CTCCAGCAAATGCCGGATGAGATGAAGGATTTGCTGAAAGTAGCCTATAC
AACGTCTGTCACTGGAAATCATGATTCTTGCCGAGGTAGTGAGTACGCAT
ACAGAAAAGCTACTATTCAATATGCCTATCCATTGGTATTTCAAATTCTG
TTTATGAAATCGAAATACCTATAGTTGTAGTTATCCTATACGCCTTAAAC
CAACATCTACATTATAATACAATGTTGGAATATAAAACACTGGCCACCTC
GTTTAATTCTAAGGTGATGCGTGTCTCGAGGAGATGAACAAAGAGATTAA
ATTCTGGTTGAACAATGTTGGTATACCTTCAAAGACAAACTGGACTGAAA
CTAT

Coding sequence (CDS) from alignment at sc0000464:53541..54444-

>TCONS_00023878 ID=TCONS_00023878|Name=TCONS_00023878|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000464:53541..54444- (Clytia hemisphaerica)
GCATTGAAATGGCTATGGAGCAGTTAGAGGGTTTGTTTTTTTACAAGACA
CCATCCAATCTATCAACGACTGCTAGTGTATAAAAACAGCTGGGCTTCGA
GACAGATAAGGCCAAGGATGTTTTCCGGAAGGACAAAGATCACCACAAAG
AATGGTGCTTTCTGGAGCTTATGTTTTACGCTGGTGTTGACGAACTACTT
TCACTCTACGTTAAATTGTTTGCAACTGACGTTTCACTCACTGGTTTTTG
GAATCGGTGCCAGGCTCAATCTCCAAATCTAAAGTACATGGCGAACATGT
GCCTGAATCATCTTTTTGCGATGATGTTATTTAGAGTTTCGGTTCGTAGA
AACTGCTTTGAAGGCATTGAAATGGCTATGGAGCAGTTAGAGGGTTTGTT
TTTTTACAAGACACCATCCAATCTATCAACGACTGCTAGTGTATAAAAAC
AGCTGGGCTTCGAGACAGATAAGGCCAAGGATGTTTTCCGGAAGGACAAA
GATCACCACAAAGAATGGTGCTTTCTGGAGCTTATGTTTTACGCTGGTGT
TGACGAACTACTTTCACTCTACGTTAAATTGTTTGCAACTGACGTTTCAC
TCACTGGTTTTTGGAATCGGTGCCAGGCTCAATCTCCAAATCTAAAGTAC
ATGGCGAACATGTGCCTGAATCATCTTTTTGCGATGATGTTATTTAGAGT
TTCGGTTCGTAGAAACTGCTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013422XLOC_013422Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023878-proteinTCONS_00023878-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023878-exon-sc0000464-1575043694:54165..54444TCONS_00023878-exon-sc0000464-1575043694:54165..54444Clytia hemisphaericaexon
TCONS_00023878-exon-sc0000464-1575043694:53541..53987TCONS_00023878-exon-sc0000464-1575043694:53541..53987Clytia hemisphaericaexon
TCONS_00023878-exon-sc0000464-1510915933:54165..54444TCONS_00023878-exon-sc0000464-1510915933:54165..54444Clytia hemisphaericaexon
TCONS_00023878-exon-sc0000464-1510915933:53541..53987TCONS_00023878-exon-sc0000464-1510915933:53541..53987Clytia hemisphaericaexon
TCONS_00023878-exon-sc0000464-1491911889:54165..54444TCONS_00023878-exon-sc0000464-1491911889:54165..54444Clytia hemisphaericaexon
TCONS_00023878-exon-sc0000464-1491911889:53541..53987TCONS_00023878-exon-sc0000464-1491911889:53541..53987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:53541..54444 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0907363	0.0753944	0	0	0.0923624	0.072986	0.116656	0	0.173145	0.142979	0	0.150197	0.157511	0.52035	0.738925	0.763568	0.771226	0.287275	0.509644	0.0761865	0.399783	0.611697	0	0.142789	0	0.211409	1.39145	1.13178	0.228055	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top