TCONS_00023894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023894
Unique NameTCONS_00023894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023894 ID=TCONS_00023894|Name=TCONS_00023894|organism=Clytia hemisphaerica|type=transcript|length=527bp
CCCAAAAAACGGACGGGAAGACCACCTAAAGTGACTGACCGAGACCgcag
aaaaaaatttgctgCAATGAGAAAACTAAAAGAGGAGTACGGTACTTTTA
ATGCAACACACATTCGCCGTGAAGCAGGGGTTTATCACCTTGCCCCAAGA
ACTGTGCGATTTGTTTTGAATGCGGCAGGCTACAAGTATAAACAGTGTAG
GAAGAAAGGCATCCTATTGAAGGGAGACCTAAAGAAAAGAATGAAATTTG
CTAAACGGTGCAAAAAACTACCCACAAACTTTTGGAAGGAAGGAATTGGA
TTTTACTTGGAGGGTGTATCCTTCGTACACAAAACTAACCCTTTTGATTA
TGCCAAAACTTGCCGGACAAGGACATACATGAAGATAGGCGAAAAATTAG
ACCTGCACAACACCACCAAGGGCAAAAAGGAAGGAGTTGGTTCCCGCATT
GCCAAATTTTTCTGTGCTATTGCATACGGAAGAGGATTCATGGAATGCCA
CCATATCACAGGAAAAGTAAATGGCGA
Run BLAST on NCBI

protein sequence of TCONS_00023894-protein

>TCONS_00023894-protein ID=TCONS_00023894-protein|Name=TCONS_00023894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
PKKRTGRPPKVTDRDRRKKFAAMRKLKEEYGTFNATHIRREAGVYHLAPR
TVRFVLNAAGYKYKQCRKKGILLKGDLKKRMKFAKRCKKLPTNFWKEGIG
FYLEGVSFVHKTNPFDYAKTCRTRTYMKIGEKLDLHNTTKGKKEGVGSRI
AKFFCAIAYGRGFMECHHITGKVNG
Run BLAST on NCBI

transcript from alignment at sc0000464:127671..128197

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023894 ID=TCONS_00023894|Name=TCONS_00023894|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000464:127671..128197 (Clytia hemisphaerica)
TCGCCATTTACTTTTCCTGTGATATGGTGGCATTCCATGAATCCTCTTCC
GTATGCAATAGCACAGAAAAATTTGGCAATGCGGGAACCAACTCCTTCCT
TTTTGCCCTTGGTGGTGTTGTGCAGGTCTAATTTTTCGCCTATCTTCATG
TATGTCCTTGTCCGGCAAGTTTTGGCATAATCAAAAGGGTTAGTTTTGTG
TACGAAGGATACACCCTCCAAGTAAAATCCAATTCCTTCCTTCCAAAAGT
TTGTGGGTAGTTTTTTGCACCGTTTAGCAAATTTCATTCTTTTCTTTAGG
TCTCCCTTCAATAGGATGCCTTTCTTCCTACACTGTTTATACTTGTAGCC
TGCCGCATTCAAAACAAATCGCACAGTTCTTGGGGCAAGGTGATAAACCC
CTGCTTCACGGCGAATGTGTGTTGCATTAAAAGTACCGTACTCCTCTTTT
AGTTTTCTCATTGcagcaaatttttttctgcGGTCTCGGTCAGTCACTTT
AGGTGGTCTTCCCGTCCGTTTTTTGGG

Coding sequence (CDS) from alignment at sc0000464:127671..128197

>TCONS_00023894 ID=TCONS_00023894|Name=TCONS_00023894|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0000464:127671..128197 (Clytia hemisphaerica)
GCCATTTACTTTTCCTGTGATATGGTGGCATTCCATGAATCCTCTTCCGT
ATGCAATAGCACAGAAAAATTTGGCAATGCGGGAACCAACTCCTTCCTTT
TTGCCCTTGGTGGTGTTGTGCAGGTCTAATTTTTCGCCTATCTTCATGTA
TGTCCTTGTCCGGCAAGTTTTGGCATAATCAAAAGGGTTAGTTTTGTGTA
CGAAGGATACACCCTCCAAGTAAAATCCAATTCCTTCCTTCCAAAAGTTT
GTGGGTAGTTTTTTGCACCGTTTAGCAAATTTCATTCTTTTCTTTAGGTC
TCCCTTCAATAGGATGCCTTTCTTCCTACACTGTTTATACTTGTAGCCTG
CCGCATTCAAAACAAATCGCACAGTTCTTGGGGCAAGGTGATAAACCCCT
GCTTCACGGCGAATGTGTGTTGCATTAAAAGTACCGTACTCCTCTTTTAG
TTTTCTCATTGcagcaaatttttttctgcGGTCTCGGTCAGTCACTTTAG
GTGGTCTTCCCGTCCGTTTTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013436XLOC_013436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023894-exon-sc0000464-1491911889:127671..128197TCONS_00023894-exon-sc0000464-1491911889:127671..128197Clytia hemisphaericaexon
TCONS_00023894-exon-sc0000464-1510915933:127671..128197TCONS_00023894-exon-sc0000464-1510915933:127671..128197Clytia hemisphaericaexon
TCONS_00023894-exon-sc0000464-1575043694:127671..128197TCONS_00023894-exon-sc0000464-1575043694:127671..128197Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023894-proteinTCONS_00023894-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:127671..128197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23437	0.925903	0.631599	0.247169	6.61989	3.69868	6.88487	5.19473	2.28201	3.37908	1.79019	1.89816	1.92041	2.22732	2.15391	2.31148	1.93847	2.62395	2.54621	2.68965	2.61828	2.35502	2.37655	2.1506	6.79056	7.4521	2.03945	3.23912	1.79507	1.71552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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