TCONS_00023895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023895
Unique NameTCONS_00023895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023895 ID=TCONS_00023895|Name=TCONS_00023895|organism=Clytia hemisphaerica|type=transcript|length=872bp
TTTCAGATCACCTAGCTTCTTGACTGGGAGCGAGAGAGTCAAAGAGGTGG
TGTCAATTTCAACTCCAAGAAATACCAGTCTTGTGCATGGTGGGACAAGC
TTAGAGGGGCTGATGGTAAAACCTAGGGAAACCAGAAGGGAGGAAAGAGT
ATCAAAGGCAGCTTGACATTCATGCTGAGTTCTACCAATGACCAAGAAAT
CATCAAGATACACTATGATCAAAGGGTAGCCTCTTCTCTGCATCATACGT
CTGACACTCTGAGTTAAACGATGAAAAATACCAGGGGCACTGTGTGCGTC
AAAAGGGAGACGTGTATCTTTTAGATACGTGTAATGGCTATCCCCACTAA
ATTTCCACTTCAACCCGAGAGCATCTCAGTTAGAAGGATGGACTGGGACA
GATCTATACGCATGTCTCAAATCTATCTTAGCGATGAAGAAATCCTTCCC
TATCAACCTGCAGGCGTCATCTAGGATCTGGAAAGGTTGCTTCTCAATAT
CGATGTAAGAATTAACGCCCATACCGTGGGGCATTGAACAGTCATGGATC
AAACGGAGATCCTCAGAATCAGGCTTTTGAACTGCTCCAAGTGCGCTGAC
TATCACAGGCTTTTCAGTAGCAATAATGTAGTTTCCAGCCGCAAGTTCTC
CAAGGATAGTGGCTTCAACTTTCGCTTTAGAACCCTGGTCAATAGCAGAA
TTGTAGTTATCCATCTCCGCAGGGCTGATTGAAGCATCTGCTGGGAGCAA
TTGAAACCCATTGACCACaccatcaaataaaaattgacgGTCCGGATCAT
TTTGGAGTTCTTTGTCCCAAAGTGCAGAATCAAGCGGAGAAGAACCAGGT
TCAGAAGAAAAGAGTCATTGAG
Run BLAST on NCBI

protein sequence of TCONS_00023895-protein

>TCONS_00023895-protein ID=TCONS_00023895-protein|Name=TCONS_00023895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MDNYNSAIDQGSKAKVEATILGELAAGNYIIATEKPVIVSALGAVQKPDS
EDLRLIHDCSMPHGMGVNSYIDIEKQPFQILDDACRLIGKDFFIAKIDLR
HAYRSVPVHPSN
Run BLAST on NCBI

transcript from alignment at sc0000464:133025..133896

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023895 ID=TCONS_00023895|Name=TCONS_00023895|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0000464:133025..133896 (Clytia hemisphaerica)
CTCAATGACTCTTTTCTTCTGAACCTGGTTCTTCTCCGCTTGATTCTGCA
CTTTGGGACAAAGAACTCCAAAATGATCCGGACcgtcaatttttatttga
tggtGTGGTCAATGGGTTTCAATTGCTCCCAGCAGATGCTTCAATCAGCC
CTGCGGAGATGGATAACTACAATTCTGCTATTGACCAGGGTTCTAAAGCG
AAAGTTGAAGCCACTATCCTTGGAGAACTTGCGGCTGGAAACTACATTAT
TGCTACTGAAAAGCCTGTGATAGTCAGCGCACTTGGAGCAGTTCAAAAGC
CTGATTCTGAGGATCTCCGTTTGATCCATGACTGTTCAATGCCCCACGGT
ATGGGCGTTAATTCTTACATCGATATTGAGAAGCAACCTTTCCAGATCCT
AGATGACGCCTGCAGGTTGATAGGGAAGGATTTCTTCATCGCTAAGATAG
ATTTGAGACATGCGTATAGATCTGTCCCAGTCCATCCTTCTAACTGAGAT
GCTCTCGGGTTGAAGTGGAAATTTAGTGGGGATAGCCATTACACGTATCT
AAAAGATACACGTCTCCCTTTTGACGCACACAGTGCCCCTGGTATTTTTC
ATCGTTTAACTCAGAGTGTCAGACGTATGATGCAGAGAAGAGGCTACCCT
TTGATCATAGTGTATCTTGATGATTTCTTGGTCATTGGTAGAACTCAGCA
TGAATGTCAAGCTGCCTTTGATACTCTTTCCTCCCTTCTGGTTTCCCTAG
GTTTTACCATCAGCCCCTCTAAGCTTGTCCCACCATGCACAAGACTGGTA
TTTCTTGGAGTTGAAATTGACACCACCTCTTTGACTCTCTCGCTCCCAGT
CAAGAAGCTAGGTGATCTGAAA

Coding sequence (CDS) from alignment at sc0000464:133025..133896

>TCONS_00023895 ID=TCONS_00023895|Name=TCONS_00023895|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000464:133025..133896 (Clytia hemisphaerica)
ATGGATAACTACAATTCTGCTATTGACCAGGGTTCTAAAGCGAAAGTTGA
AGCCACTATCCTTGGAGAACTTGCGGCTGGAAACTACATTATTGCTACTG
AAAAGCCTGTGATAGTCAGCGCACTTGGAGCAGTTCAAAAGCCTGATTCT
GAGGATCTCCGTTTGATCCATGACTGTTCAATGCCCCACGGTATGGGCGT
TAATTCTTACATCGATATTGAGAAGCAACCTTTCCAGATCCTAGATGACG
CCTGCAGGTTGATAGGGAAGGATTTCTTCATCGCTAAGATAGATTTGAGA
CATGCGTATAGATCTGTCCCAGTCCATCCTTCTAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013437XLOC_013437Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023895-proteinTCONS_00023895-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023895-exon-sc0000464-1491911889:133025..133896TCONS_00023895-exon-sc0000464-1491911889:133025..133896Clytia hemisphaericaexon
TCONS_00023895-exon-sc0000464-1510915933:133025..133896TCONS_00023895-exon-sc0000464-1510915933:133025..133896Clytia hemisphaericaexon
TCONS_00023895-exon-sc0000464-1575043694:133025..133896TCONS_00023895-exon-sc0000464-1575043694:133025..133896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:133025..133896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05633	0.894472	0.854077	1.21933	0.617316	0.363213	1.06647	0.78296	0.509181	0.969736	0.942938	1.14442	0.433513	0.802515	0.650504	0.505936	0.743063	0.368355	0.17065	0.729137	0.807199	1.35	0.138175	0.223121	0.81568	1.20215	0.862637	0.381763	0.694293	0.317195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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