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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023896 ID=TCONS_00023896|Name=TCONS_00023896|organism=Clytia hemisphaerica|type=transcript|length=1805bp
GCCATTTGACTGCAGGTTATAAGCAGATGATAGGCGATGACGAACTCCCC
ATTTGGCAAGGAAATCTTCTGTAGCTTTACTGACAAATTCTGGACCTCCA
TCactagaaatttcttctggaaCACCGAATCTGGCGAAACAATTTCGAAG
GCAGCAGATAAGCCCCTCTGATCCTGCTTGTGGCGATCCTTTAGGTGAGC
GAAAGACATCCGACCAACCAGACAATCGATCCCCGATGACGAGGTAATGC
TGACCGACACATTCAAAAAAATCAGCAAATGTTTGTTCGAAAGGTGTTGC
GGGTGGGGCGGTCACTTCGCTGGGAAGGCGTGGTTGAGAGGGTGCATTCT
TGATACAATCTCTGCATGATTGACGTCGCCGTTCAATATCATCCGTCATG
CCAGGCCAAAAGACTGTAGCACGGGCACGAAGAGCCATAGTTGAAGCTCC
TTGGTGGGCTGAATGAAGCACGTCCAAAACAGTAGGTCGGAGAGATGATG
GTACCACGACACGGTCATTGTAAACTATGACATCTTCGACCAGGTGGAGA
CTGTCGCGATAACGCCAGAATGGAGCTGTTGTCGGGTCTGTTCGATAGGC
TTCAGGGTATCCTTGAATAATGGCTTCTCGAAGGGTGATAAATGTAGGAT
CAGTACGTGTAGCTGCTGACAGAGTCTCCCATGTTATCGATGTGAGATTG
TGGGTGTCGTTTTGAATAGCTGAGGCAGCCAGACATTCCATCCATGGAAC
ACAATCGTTAGGTTGATCAGCAGAAGGGTATCGTGAAGTTGCGTTGGCTG
CAGAATTTTCTTCACCTGGTACCCAGATTACGTTAAAGTACCATGGTAGA
ATccttttctttaatttaaaCAGTCTCTCATTAGAAATCTCATCAAGTGT
TCTATCACCGAAAATTTTGACAAGAGGTTGGTGATCTGTTGCGATGATAA
GGTTGTGACATCCAAGGGTGAAGTACTTAGTCTGCTCAAGGGCATAAACG
ATAGCAAGCGCCTCTCCTTCAATCGGTTCGTCAAGGTTCTGCTCTTCAGG
GGATAGGAATCTTGATCCAGCTAGGGTGATGCGCCATCCATCTTCGCAAC
AGTCTGGAGTCGTTTCTGGACAGGAACAGTGTTTTTGTAGAAGGAAGTAA
CCGACTCCCTTTTTCGACCAGTCGGTGCGAAGGCACGTTGGTAACTCGAG
GTCAAAGATTTCAACACCCTTACGAATGGCTTCGACGATGGCCAGCTTGG
AATCTTCGAAAGCCTTGTTGAGTTCAGCTGTCCATTTGAAGGGATGGCGG
GGTGATAGAGAAGGACGAAATGGTTCCATGTACTGGCGAAGCTGAGCATA
GTTCGCAACCTGGNGCTTGGAATCTTCAAAAGCCTTGTTGAGTTCAGCTG
TCCATTTGAAGGGATGGCGGGGTGACAGAAAAGGACGAAATGGTTCCATG
TACTGGCGAAGCTGAGCATAGTTCGCAACCTGGTTCACTAGCCCAAACCA
ACTTCTAATGTCTGTGGTTGATTTAGGTGTAGGAAAGTTCTTGATCGCAT
TGTAATATTTGGGAAGTGGGTCAATGCGTTCACTAGTAATGCGGAAACCA
GCAAAGTCTACCTCGCGAGAGGCAAACTGAAACTTATTTGGGTTAAGAAC
GATACCAGCATTACCGACAGTTATAAGAAAGTCAATAGTTCTCCACCAAT
GTTCTTGGAGCTCATTATCATAAAACAACGTGTCGTCTACAATGCGCTCT
TTTCGATCAAAATCAGCGAGTATAGCGTCAAAGCGACGGTTGTAACCATC
CCCAG Run BLAST on NCBI protein sequence of TCONS_00023896-protein >TCONS_00023896-protein ID=TCONS_00023896-protein|Name=TCONS_00023896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp
GDGYNRRFDAILADFDRKERIVDDTLFYDNELQEHWWRTIDFLITVGNAG
IVLNPNKFQFASREVDFAGFRITSERIDPLPKYYNAIKNFPTPKSTTDIR
SWFGLVNQVANYAQLRQYMEPFRPFLSPRHPFKWTAELNKAFEDSKXQVA
NYAQLRQYMEPFRPSLSPRHPFKWTAELNKAFEDSKLAIVEAIRKGVEIF
DLELPTCLRTDWSKKGVGYFLLQKHCSCPETTPDCCEDGWRITLAGSRFL
SPEEQNLDEPIEGEALAIVYALEQTKYFTLGCHNLIIATDHQPLVKIFGD
RTLDEISNERLFKLKKRILPWYFNVIWVPGEENSAANATSRYPSADQPND
CVPWMECLAASAIQNDTHNLTSITWETLSAATRTDPTFITLREAIIQGYP
EAYRTDPTTAPFWRYRDSLHLVEDVIVYNDRVVVPSSLRPTVLDVLHSAH
QGASTMALRARATVFWPGMTDDIERRRQSCRDCIKNAPSQPRLPSEVTAP
PATPFEQTFADFFECVGQHYLVIGDRLSGWSDVFRSPKGSPQAGSEGLIC
CLRNCFARFGVPEEISSDGGPEFVSKATEDFLAKWGVRHRLSSAYNLQSN
G Run BLAST on NCBI transcript from alignment at sc0000464:143469..145273 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023896 ID=TCONS_00023896|Name=TCONS_00023896|organism=Clytia hemisphaerica|type=transcript|length=1805bp|location=Sequence derived from alignment at sc0000464:143469..145273 (Clytia hemisphaerica)
CTGGGGATGGTTACAACCGTCGCTTTGACGCTATACTCGCTGATTTTGAT
CGAAAAGAGCGCATTGTAGACGACACGTTGTTTTATGATAATGAGCTCCA
AGAACATTGGTGGAGAACTATTGACTTTCTTATAACTGTCGGTAATGCTG
GTATCGTTCTTAACCCAAATAAGTTTCAGTTTGCCTCTCGCGAGGTAGAC
TTTGCTGGTTTCCGCATTACTAGTGAACGCATTGACCCACTTCCCAAATA
TTACAATGCGATCAAGAACTTTCCTACACCTAAATCAACCACAGACATTA
GAAGTTGGTTTGGGCTAGTGAACCAGGTTGCGAACTATGCTCAGCTTCGC
CAGTACATGGAACCATTTCGTCCTTTTCTGTCACCCCGCCATCCCTTCAA
ATGGACAGCTGAACTCAACAAGGCTTTTGAAGATTCCAAGCNCCAGGTTG
CGAACTATGCTCAGCTTCGCCAGTACATGGAACCATTTCGTCCTTCTCTA
TCACCCCGCCATCCCTTCAAATGGACAGCTGAACTCAACAAGGCTTTCGA
AGATTCCAAGCTGGCCATCGTCGAAGCCATTCGTAAGGGTGTTGAAATCT
TTGACCTCGAGTTACCAACGTGCCTTCGCACCGACTGGTCGAAAAAGGGA
GTCGGTTACTTCCTTCTACAAAAACACTGTTCCTGTCCAGAAACGACTCC
AGACTGTTGCGAAGATGGATGGCGCATCACCCTAGCTGGATCAAGATTCC
TATCCCCTGAAGAGCAGAACCTTGACGAACCGATTGAAGGAGAGGCGCTT
GCTATCGTTTATGCCCTTGAGCAGACTAAGTACTTCACCCTTGGATGTCA
CAACCTTATCATCGCAACAGATCACCAACCTCTTGTCAAAATTTTCGGTG
ATAGAACACTTGATGAGATTTCTAATGAGAGACTGtttaaattaaagaaa
aggATTCTACCATGGTACTTTAACGTAATCTGGGTACCAGGTGAAGAAAA
TTCTGCAGCCAACGCAACTTCACGATACCCTTCTGCTGATCAACCTAACG
ATTGTGTTCCATGGATGGAATGTCTGGCTGCCTCAGCTATTCAAAACGAC
ACCCACAATCTCACATCGATAACATGGGAGACTCTGTCAGCAGCTACACG
TACTGATCCTACATTTATCACCCTTCGAGAAGCCATTATTCAAGGATACC
CTGAAGCCTATCGAACAGACCCGACAACAGCTCCATTCTGGCGTTATCGC
GACAGTCTCCACCTGGTCGAAGATGTCATAGTTTACAATGACCGTGTCGT
GGTACCATCATCTCTCCGACCTACTGTTTTGGACGTGCTTCATTCAGCCC
ACCAAGGAGCTTCAACTATGGCTCTTCGTGCCCGTGCTACAGTCTTTTGG
CCTGGCATGACGGATGATATTGAACGGCGACGTCAATCATGCAGAGATTG
TATCAAGAATGCACCCTCTCAACCACGCCTTCCCAGCGAAGTGACCGCCC
CACCCGCAACACCTTTCGAACAAACATTTGCTGATTTTTTTGAATGTGTC
GGTCAGCATTACCTCGTCATCGGGGATCGATTGTCTGGTTGGTCGGATGT
CTTTCGCTCACCTAAAGGATCGCCACAAGCAGGATCAGAGGGGCTTATCT
GCTGCCTTCGAAATTGTTTCGCCAGATTCGGTGttccagaagaaatttct
agtGATGGAGGTCCAGAATTTGTCAGTAAAGCTACAGAAGATTTCCTTGC
CAAATGGGGAGTTCGTCATCGCCTATCATCTGCTTATAACCTGCAGTCAA
ATGGC Coding sequence (CDS) from alignment at sc0000464:143469..145273 >TCONS_00023896 ID=TCONS_00023896|Name=TCONS_00023896|organism=Clytia hemisphaerica|type=CDS|length=1803bp|location=Sequence derived from alignment at sc0000464:143469..145273 (Clytia hemisphaerica)
GGGGATGGTTACAACCGTCGCTTTGACGCTATACTCGCTGATTTTGATCG
AAAAGAGCGCATTGTAGACGACACGTTGTTTTATGATAATGAGCTCCAAG
AACATTGGTGGAGAACTATTGACTTTCTTATAACTGTCGGTAATGCTGGT
ATCGTTCTTAACCCAAATAAGTTTCAGTTTGCCTCTCGCGAGGTAGACTT
TGCTGGTTTCCGCATTACTAGTGAACGCATTGACCCACTTCCCAAATATT
ACAATGCGATCAAGAACTTTCCTACACCTAAATCAACCACAGACATTAGA
AGTTGGTTTGGGCTAGTGAACCAGGTTGCGAACTATGCTCAGCTTCGCCA
GTACATGGAACCATTTCGTCCTTTTCTGTCACCCCGCCATCCCTTCAAAT
GGACAGCTGAACTCAACAAGGCTTTTGAAGATTCCAAGCNCCAGGTTGCG
AACTATGCTCAGCTTCGCCAGTACATGGAACCATTTCGTCCTTCTCTATC
ACCCCGCCATCCCTTCAAATGGACAGCTGAACTCAACAAGGCTTTCGAAG
ATTCCAAGCTGGCCATCGTCGAAGCCATTCGTAAGGGTGTTGAAATCTTT
GACCTCGAGTTACCAACGTGCCTTCGCACCGACTGGTCGAAAAAGGGAGT
CGGTTACTTCCTTCTACAAAAACACTGTTCCTGTCCAGAAACGACTCCAG
ACTGTTGCGAAGATGGATGGCGCATCACCCTAGCTGGATCAAGATTCCTA
TCCCCTGAAGAGCAGAACCTTGACGAACCGATTGAAGGAGAGGCGCTTGC
TATCGTTTATGCCCTTGAGCAGACTAAGTACTTCACCCTTGGATGTCACA
ACCTTATCATCGCAACAGATCACCAACCTCTTGTCAAAATTTTCGGTGAT
AGAACACTTGATGAGATTTCTAATGAGAGACTGtttaaattaaagaaaag
gATTCTACCATGGTACTTTAACGTAATCTGGGTACCAGGTGAAGAAAATT
CTGCAGCCAACGCAACTTCACGATACCCTTCTGCTGATCAACCTAACGAT
TGTGTTCCATGGATGGAATGTCTGGCTGCCTCAGCTATTCAAAACGACAC
CCACAATCTCACATCGATAACATGGGAGACTCTGTCAGCAGCTACACGTA
CTGATCCTACATTTATCACCCTTCGAGAAGCCATTATTCAAGGATACCCT
GAAGCCTATCGAACAGACCCGACAACAGCTCCATTCTGGCGTTATCGCGA
CAGTCTCCACCTGGTCGAAGATGTCATAGTTTACAATGACCGTGTCGTGG
TACCATCATCTCTCCGACCTACTGTTTTGGACGTGCTTCATTCAGCCCAC
CAAGGAGCTTCAACTATGGCTCTTCGTGCCCGTGCTACAGTCTTTTGGCC
TGGCATGACGGATGATATTGAACGGCGACGTCAATCATGCAGAGATTGTA
TCAAGAATGCACCCTCTCAACCACGCCTTCCCAGCGAAGTGACCGCCCCA
CCCGCAACACCTTTCGAACAAACATTTGCTGATTTTTTTGAATGTGTCGG
TCAGCATTACCTCGTCATCGGGGATCGATTGTCTGGTTGGTCGGATGTCT
TTCGCTCACCTAAAGGATCGCCACAAGCAGGATCAGAGGGGCTTATCTGC
TGCCTTCGAAATTGTTTCGCCAGATTCGGTGttccagaagaaatttctag
tGATGGAGGTCCAGAATTTGTCAGTAAAGCTACAGAAGATTTCCTTGCCA
AATGGGGAGTTCGTCATCGCCTATCATCTGCTTATAACCTGCAGTCAAAT
GGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023896-exon-sc0000464-1491911889:143469..145273 | TCONS_00023896-exon-sc0000464-1491911889:143469..145273 | Clytia hemisphaerica | exon |
| TCONS_00023896-exon-sc0000464-1510915933:143469..145273 | TCONS_00023896-exon-sc0000464-1510915933:143469..145273 | Clytia hemisphaerica | exon |
| TCONS_00023896-exon-sc0000464-1575043694:143469..145273 | TCONS_00023896-exon-sc0000464-1575043694:143469..145273 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:143469..145273 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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