TCONS_00023901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023901
Unique NameTCONS_00023901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023901 ID=TCONS_00023901|Name=TCONS_00023901|organism=Clytia hemisphaerica|type=transcript|length=344bp
CGGGACAAACGTTTCTCTTCGCAACACAAACGACGAACGCGCGACGAACG
AACCGTGTTGCACGGTTTGCATGGACCAGATTGGCAACAGCGACATGCAA
ACCAGTTGCTGTGGGCAGCCAGCGTTCTGCAGGAATTGTTTGAGTATTTA
TATAGATTTGTCTTCGGACAGCACCTATCCTGTGGCAAAGCGTTGCCCAC
TGTGCAACCGGGAATGGCCTGACGGTCCAATGATGGTACCAAGAGAAGAA
GAACAATAAACCAAAAAAGATTGTAGTATTTTATattagaaaattattat
ttatttagttttagaatttatttttgacgAAATCTTGTAACGAG
Run BLAST on NCBI

transcript from alignment at sc0000464:240149..240492

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023901 ID=TCONS_00023901|Name=TCONS_00023901|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at sc0000464:240149..240492 (Clytia hemisphaerica)
CTCGTTACAAGATTTcgtcaaaaataaattctaaaactaaataaataata
attttctaatATAAAATACTACAATCTTTTTTGGTTTATTGTTCTTCTTC
TCTTGGTACCATCATTGGACCGTCAGGCCATTCCCGGTTGCACAGTGGGC
AACGCTTTGCCACAGGATAGGTGCTGTCCGAAGACAAATCTATATAAATA
CTCAAACAATTCCTGCAGAACGCTGGCTGCCCACAGCAACTGGTTTGCAT
GTCGCTGTTGCCAATCTGGTCCATGCAAACCGTGCAACACGGTTCGTTCG
TCGCGCGTTCGTCGTTTGTGTTGCGAAGAGAAACGTTTGTCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013443XLOC_013443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023901-exon-sc0000464-1491911889:240149..240492TCONS_00023901-exon-sc0000464-1491911889:240149..240492Clytia hemisphaericaexon
TCONS_00023901-exon-sc0000464-1510915933:240149..240492TCONS_00023901-exon-sc0000464-1510915933:240149..240492Clytia hemisphaericaexon
TCONS_00023901-exon-sc0000464-1575043694:240149..240492TCONS_00023901-exon-sc0000464-1575043694:240149..240492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:240149..240492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.256269	0	0	0.708793	0	0	0	0.221454	2.0492	1.48211	0.686261	1.58902	0.791673	1.96725	4.07785	4.62585	5.73934	3.81119	2.94566	0.290791	0	1.62394	2.41735	0	0.251815	6.13082	4.53188	0.666234	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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