TCONS_00023951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023951
Unique NameTCONS_00023951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023951 ID=TCONS_00023951|Name=TCONS_00023951|organism=Clytia hemisphaerica|type=transcript|length=552bp
GCGCAGCATTATGCATGTACCGGACTACCGCCATACCAATTAAATATGTT
CCTGAATAAAGGTTATCGAAAATATGTATGCGTTACCTGCTGTCCCACAC
CACCAGAACTCACGAAAAAAGTTCACGAACAAGCAAATAGAATCAATAGC
TATACGCACAACCGAAAAGGAATTGTAGCTTGCGGAGGCATCGATAAAGT
GAAGAGCGAGAACGAGAACGAGAAAGAATTGAACAACGTGGTCAAGGATT
TACGAATTAAAACACAACCCACTTATGTCTTTCGTATCGGAAGAACACAA
GATACAAGACCAATCAAAGTAGTATTTAAAGATGGTCATGAGAAATATAA
ATTTATGACAAAATTGACTGAattgaaaaatcatcaaaaatatcACGGAC
GACATGACGAAAATGGAAAGAGAGTTCGTAAAAGAATGGAAGAAGAAAGC
AGACGAGAGAAACCTAATAGAGTCCAATATTGATTATGTGTGGAGAGTGC
GAGGAAGTCCACGTGAAGGACTTTaccttaaaaagatatttaaactaaaa
tt
Run BLAST on NCBI

protein sequence of TCONS_00023951-protein

>TCONS_00023951-protein ID=TCONS_00023951-protein|Name=TCONS_00023951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
AQHYACTGLPPYQLNMFLNKGYRKYVCVTCCPTPPELTKKVHEQANRINS
YTHNRKGIVACGGIDKVKSENENEKELNNVVKDLRIKTQPTYVFRIGRTQ
DTRPIKVVFKDGHEKYKFMTKLTELKNHQKYHGRHDENGKRVRKRMEEES
RREKPNRVQY
Run BLAST on NCBI

transcript from alignment at sc0000465:2164..2715

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023951 ID=TCONS_00023951|Name=TCONS_00023951|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at sc0000465:2164..2715 (Clytia hemisphaerica)
aattttagtttaaatatctttttaaggtAAAGTCCTTCACGTGGACTTCC
TCGCACTCTCCACACATAATCAATATTGGACTCTATTAGGTTTCTCTCGT
CTGCTTTCTTCTTCCATTCTTTTACGAACTCTCTTTCCATTTTCGTCATG
TCGTCCGTgatatttttgatgatttttcaatTCAGTCAATTTTGTCATAA
ATTTATATTTCTCATGACCATCTTTAAATACTACTTTGATTGGTCTTGTA
TCTTGTGTTCTTCCGATACGAAAGACATAAGTGGGTTGTGTTTTAATTCG
TAAATCCTTGACCACGTTGTTCAATTCTTTCTCGTTCTCGTTCTCGCTCT
TCACTTTATCGATGCCTCCGCAAGCTACAATTCCTTTTCGGTTGTGCGTA
TAGCTATTGATTCTATTTGCTTGTTCGTGAACTTTTTTCGTGAGTTCTGG
TGGTGTGGGACAGCAGGTAACGCATACATATTTTCGATAACCTTTATTCA
GGAACATATTTAATTGGTATGGCGGTAGTCCGGTACATGCATAATGCTGC
GC

Coding sequence (CDS) from alignment at sc0000465:2164..2715

>TCONS_00023951 ID=TCONS_00023951|Name=TCONS_00023951|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000465:2164..2715 (Clytia hemisphaerica)
TCAATATTGGACTCTATTAGGTTTCTCTCGTCTGCTTTCTTCTTCCATTC
TTTTACGAACTCTCTTTCCATTTTCGTCATGTCGTCCGTgatatttttga
tgatttttcaatTCAGTCAATTTTGTCATAAATTTATATTTCTCATGACC
ATCTTTAAATACTACTTTGATTGGTCTTGTATCTTGTGTTCTTCCGATAC
GAAAGACATAAGTGGGTTGTGTTTTAATTCGTAAATCCTTGACCACGTTG
TTCAATTCTTTCTCGTTCTCGTTCTCGCTCTTCACTTTATCGATGCCTCC
GCAAGCTACAATTCCTTTTCGGTTGTGCGTATAGCTATTGATTCTATTTG
CTTGTTCGTGAACTTTTTTCGTGAGTTCTGGTGGTGTGGGACAGCAGGTA
ACGCATACATATTTTCGATAACCTTTATTCAGGAACATATTTAATTGGTA
TGGCGGTAGTCCGGTACATGCATAATGCTGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013457XLOC_013457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023951-exon-sc0000465-1491911889:2164..2715TCONS_00023951-exon-sc0000465-1491911889:2164..2715Clytia hemisphaericaexon
TCONS_00023951-exon-sc0000465-1510915933:2164..2715TCONS_00023951-exon-sc0000465-1510915933:2164..2715Clytia hemisphaericaexon
TCONS_00023951-exon-sc0000465-1575043694:2164..2715TCONS_00023951-exon-sc0000465-1575043694:2164..2715Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023951-proteinTCONS_00023951-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000465supercontigsc0000465:2164..2715 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206867	0	0.117113	0.114577	0.139486	0.330671	1.46278	0.622473	0.261485	0.755746	0.943129	0.137772	0.0687905	0.142879	0	0.0630296	0	0.0795859	0	0	0	0	0	0	0	0	0	0	0.114803	0.116966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top