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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023972 ID=TCONS_00023972|Name=TCONS_00023972|organism=Clytia hemisphaerica|type=transcript|length=1133bp
aattttgaaagatgAGGAAGTCCAACACTAATTGTTCATAAAAATGAGCT
GACAACATTCATGGTCAGTCTCCCTCGTCATTTAATTCATGCCACACTCT
AAAGAGGTTAAAGGTGGTTTATatacaagaaaaaaatgacaaaaataaca
TTGATATTGTTGATGCTATTTTTAGTGGTTGGCTTTTTAGAAGGTTCGAA
AAATGATGGACCAAGTTCGTTAGCTTCTATATCTCAATCTGGTGGAAGAA
TTTTAAAgGTGTTATCGAGAAGTCGAAGGTCGCCCTTCTTCCAATACGCG
CAACGAGTGAAGAGAACGAATGGTAGCAAAAAGAAgaggagaaataggaa
aagaaGCAAACCTCAAAGCTGCAAAGCAAAGCTATACAAACCATGCAATC
CTTATTATCCAAACGCATGCGCACAAAGACGATGTAAATTAAAGTGCACC
AGGTTCTTCTTTACGGCCCTGTGTACACTACCAAGAAAAGATCGAAACAA
CATGAAGCATACCGCCTGATCAAATcgattccagaaaaaaaaagaaaact
cgcTTAAAGAAGCTACGTTGCTTTCAGACTTGATGTATATTGAACAACAT
ATAAAGGGTGATTTGATGCTATAAAAAGGAATTCAAGCGCTTTTTAGGAA
GCTATGAAATGTATAAtgaacaatttaaaaacaataatataATATTTGAG
CAGGACAAAAATGAATGAGAACAAAGAGGAAGTGAGACTGTTTAACATTT
TCAAGTGCATCATTTACGTGTCACGAGAGCGCTTTGCTACGAGATATTGA
GGCTTTTGTACTTCTCTACTACGATCGTTTCTCTAACCAAACTTGTTGAT
GCTTCATTGTAAACAAAATGAGGAGGCGTTGCATCAAGGGCGTTCTTCGT
TTTCCTTCCACGTCGCCCTCTTTGCTtcctattttcaatattttaccatt
ttgtaaATATATGCTGTTTNAGGGCGTTCTTCGTTTTCCTTCCTCGTCGC
CCTCTTTGCTtcctattttcaatattttaccattttgtaaATATATGCTG
TTTTTTAACTATTGattttatgttgtttttatATTAGATGTAtagatttt
taatttgaaagagATATATAACCATCGTAAAGT Run BLAST on NCBI protein sequence of TCONS_00023972-protein >TCONS_00023972-protein ID=TCONS_00023972-protein|Name=TCONS_00023972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MTKITLILLMLFLVVGFLEGSKNDGPSSLASISQSGGRILKVLSRSRRSP
FFQYAQRVKRTNGSKKKRRNRKRSKPQSCKAKLYKPCNPYYPNACAQRRC
KLKCTRFFFTALCTLPRKDRNNMKHTA Run BLAST on NCBI transcript from alignment at sc0000468:164097..165518+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023972 ID=TCONS_00023972|Name=TCONS_00023972|organism=Clytia hemisphaerica|type=transcript|length=1422bp|location=Sequence derived from alignment at sc0000468:164097..165518+ (Clytia hemisphaerica)
aattttgaaagatgAGGAAGTCCAACACTAATTGTTCATAAAAATGAGCT
GACAACATTCATGGTCAGTCTCCCTCGTCATTTAATTCATGCCACACTCT
AAAGAGGTTAAAGGTGGTTTATatacaagaaaaaaatgacaaaaataaca
TTGATATTGTTGATGCTATTTTTAGTGGTTGGCTTTTTAGAAGGTTCGAA
AAATGATGGACCAAGTTCGTTAGCTTCTATATCTCAATCTGGTGGAAGAA
TTTTAAAggtaaaatttatttgggcgAATCATGGAAAGTTTTCTCTATTA
TGCAAAATTAGATTTTAATGTTGAACTTATGGAATTGACTTTAACAATGA
TGGCTTTTAAGTTTACATCAGTGTCTCTTCAATCCTTTGATACAGTGTTG
TAAAAGCTCGGTAAGAACAGGCTATGTTATATCTCGTGTTTGCTATTTCC
ATGAACATGCTATTTCATAACTATGCAGAAAAAGACACGCATGTAAAATA
ATAAAGCCAAGTCTCTCTTTACTAAatatcttcttctttttctgcaGGTG
TTATCGAGAAGTCGAAGGTCGCCCTTCTTCCAATACGCGCAACGAGTGAA
GAGAACGAATGGTAGCAAAAAGAAgaggagaaataggaaaagaaGCAAAC
CTCAAAGCTGCAAAGCAAAGCTATACAAACCATGCAATCCTTATTATCCA
AACGCATGCGCACAAAGACGATGTAAATTAAAGTGCACCAGGTTCTTCTT
TACGGCCCTGTGTACACTACCAAGAAAAGATCGAAACAACATGAAGCATA
CCGCCTGATCAAATcgattccagaaaaaaaaagaaaactcgcTTAAAGAA
GCTACGTTGCTTTCAGACTTGATGTATATTGAACAACATATAAAGGGTGA
TTTGATGCTATAAAAAGGAATTCAAGCGCTTTTTAGGAAGCTATGAAATG
TATAAtgaacaatttaaaaacaataatataATATTTGAGCAGGACAAAAA
TGAATGAGAACAAAGAGGAAGTGAGACTGTTTAACATTTTCAAGTGCATC
ATTTACGTGTCACGAGAGCGCTTTGCTACGAGATATTGAGGCTTTTGTAC
TTCTCTACTACGATCGTTTCTCTAACCAAACTTGTTGATGCTTCATTGTA
AACAAAATGAGGAGGCGTTGCATCAAGGGCGTTCTTCGTTTTCCTTCCAC
GTCGCCCTCTTTGCTtcctattttcaatattttaccattttgtaaATATA
TGCTGTTTNAGGGCGTTCTTCGTTTTCCTTCCTCGTCGCCCTCTTTGCTt
cctattttcaatattttaccattttgtaaATATATGCTGTTTTTTAACTA
TTGattttatgttgtttttatATTAGATGTAtagatttttaatttgaaag
agATATATAACCATCGTAAAGT Coding sequence (CDS) from alignment at sc0000468:164097..165518+ >TCONS_00023972 ID=TCONS_00023972|Name=TCONS_00023972|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000468:164097..165518+ (Clytia hemisphaerica)
atgacaaaaataacaTTGATATTGTTGATGCTATTTTTAGTGGTTGGCTT
TTTAGAAGGTTCGAAAAATGATGGACCAAGTTCGTTAGCTTCTATATCTC
AATCTGGTGGAAGAATTTTAAAgGTGTTATCGAGAAGTCGAAGGTCGCCC
TTCTTCCAATACGCGCAACGAGTGAAGAGAACGAATGGTAGCAAAAAGAA
gaggagaaataggaaaagaaGCAAACCTCAAAGCTGCAAAGCAAAGCTAT
ACAAACCATGCAATCCTTATTATCCAAACGCATGCGCACAAAGACGATGT
AAATTAAAGTGCACCAGGTTCTTCTTTACGGCCCTGTGTACACTACCAAG
AAAAGATCGAAACAACATGAAGCATACCGCCTGAatgacaaaaataacaT
TGATATTGTTGATGCTATTTTTAGTGGTTGGCTTTTTAGAAGGTTCGAAA
AATGATGGACCAAGTTCGTTAGCTTCTATATCTCAATCTGGTGGAAGAAT
TTTAAAgGTGTTATCGAGAAGTCGAAGGTCGCCCTTCTTCCAATACGCGC
AACGAGTGAAGAGAACGAATGGTAGCAAAAAGAAgaggagaaataggaaa
agaaGCAAACCTCAAAGCTGCAAAGCAAAGCTATACAAACCATGCAATCC
TTATTATCCAAACGCATGCGCACAAAGACGATGTAAATTAAAGTGCACCA
GGTTCTTCTTTACGGCCCTGTGTACACTACCAAGAAAAGATCGAAACAAC
ATGAAGCATACCGCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023972-exon-sc0000468-1491911889:164097..164354 | TCONS_00023972-exon-sc0000468-1491911889:164097..164354 | Clytia hemisphaerica | exon |
| TCONS_00023972-exon-sc0000468-1510915933:164097..164354 | TCONS_00023972-exon-sc0000468-1510915933:164097..164354 | Clytia hemisphaerica | exon |
| TCONS_00023972-exon-sc0000468-1575043694:164097..164354 | TCONS_00023972-exon-sc0000468-1575043694:164097..164354 | Clytia hemisphaerica | exon |
| TCONS_00023972-exon-sc0000468-1491911889:164644..165518 | TCONS_00023972-exon-sc0000468-1491911889:164644..165518 | Clytia hemisphaerica | exon |
| TCONS_00023972-exon-sc0000468-1510915933:164644..165518 | TCONS_00023972-exon-sc0000468-1510915933:164644..165518 | Clytia hemisphaerica | exon |
| TCONS_00023972-exon-sc0000468-1575043694:164644..165518 | TCONS_00023972-exon-sc0000468-1575043694:164644..165518 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000468 | supercontig | sc0000468:164097..165518 + |
Blast
The following BLAST results are available for this feature:
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