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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024002 ID=TCONS_00024002|Name=TCONS_00024002|organism=Clytia hemisphaerica|type=transcript|length=3513bpRun BLAST on NCBI protein sequence of TCONS_00024002-protein >TCONS_00024002-protein ID=TCONS_00024002-protein|Name=TCONS_00024002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp MGKMKINATQMWTPNWKEETNMQKFINFVNSKHKLELSDNYNELWKWSTERun BLAST on NCBI transcript from alignment at sc0000470:169948..187530+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024002 ID=TCONS_00024002|Name=TCONS_00024002|organism=Clytia hemisphaerica|type=transcript|length=17583bp|location=Sequence derived from alignment at sc0000470:169948..187530+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000470:169948..187530+ >TCONS_00024002 ID=TCONS_00024002|Name=TCONS_00024002|organism=Clytia hemisphaerica|type=CDS|length=26976bp|location=Sequence derived from alignment at sc0000470:169948..187530+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024002 vs. Swiss-Prot (Human)
Match: AACS (Acetoacetyl-CoA synthetase OS=Homo sapiens GN=AACS PE=1 SV=1) HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0 Identity = 307/505 (60.79%), Postives = 390/505 (77.23%), Query Frame = 1
Query: 133 GKMKINATQ-MWTPNWKEETNMQKFINFVNSKHKLELSDNYNELWKWSTEEIEMFWEEFFHFSKMKYSKPYAKVLDKTKSMPEIPEWFIGCRLNFAENLLQGKDND-IALYITGE-KRSIKTVTFGELKKNVAKIASSLKKCGIKNGDRVVGYIPNNALAIEAMLATASLGAVWSSTSPDFGVSGVLDRFQQIKPKIIFSVDSVIYNGKSHDHLQKLNAVVNGLPDLSNVIILPYVQSEKALDITNIPNSMFMSKFLEL--SDTNPTLEFAQVPFNHPLFIMYSSGTTGPPKCMVHSVGGTLIQHLKEHILHGNTTKKDIMLYYTTTGWMMWNWMVSFLATGASVVLYDGSPFQPTPNVLWDLIQELKITILGTGARWIEALEEKNIHPAETHNLDSLHTILSTGSPLKPTSYEFVYKHIKNDILLGSITGGTDIISCFAGQNPMIPVYKGEIQSRNLGMAMESWDENGDAVYGTSGELVCTKPFPSMPVCFWNDQEGKRYHKSY 1632
G+ +I Q MW P+ K+ T M +F V + L L ++Y++L+ WS E FW EF+ FS + +S+ Y +V+D +K + ++PEWF G RLN+AENLL+ K+ND +ALYI E K I VTF EL++ VA A++++K G+K GDRVVGY+PN+ A+EAMLA AS+GA+WSSTSPDFGV+GVLDRF QI+PK+IFSV++V+YNGK H+H++KL VV GLPDL V+++PYV S + +D++ IPNS+F+ FL S+ P LEF Q+PF+HPLFIM+SSGTTG PKCMVHS GGTLIQHLKEH+LHGN T DI+L YTT GWMMWNWMVS LATGA++VLYDGSP PTPNVLWDL+ + IT+L TGA+W+ LEEK + P ETH+L LHTILSTGSPLK SYE+VY+ IK+ ILLGSI+GGTDIISCF G N +PVYKGEIQ+RNLGMA+E+W+E G AV+G SGELVCTKP P P FWND+ G +Y K+Y
Sbjct: 8 GREEILECQVMWEPDSKKNTQMDRFRAAVGAACGLAL-ESYDDLYHWSVESYSDFWAEFWKFSGIVFSRVYDEVVDTSKGIADVPEWFKGSRLNYAENLLRHKENDRVALYIAREGKEEIVKVTFEELRQEVALFAAAMRKMGVKKGDRVVGYLPNSEHAVEAMLAAASIGAIWSSTSPDFGVNGVLDRFSQIQPKLIFSVEAVVYNGKEHNHMEKLQQVVKGLPDLKKVVVIPYVSSRENIDLSKIPNSVFLDDFLATGTSEQAPQLEFEQLPFSHPLFIMFSSGTTGAPKCMVHSAGGTLIQHLKEHLLHGNMTSSDILLCYTTVGWMMWNWMVSLLATGAAMVLYDGSPLVPTPNVLWDLVDRIGITVLVTGAKWLSVLEEKAMKPVETHSLQMLHTILSTGSPLKAQSYEYVYRCIKSSILLGSISGGTDIISCFMGHNFSLPVYKGEIQARNLGMAVEAWNEEGKAVWGESGELVCTKPIPCQPTHFWNDENGNKYRKAY 511 HSP 2 Score: 250.751 bits (639), Expect = 1.460e-70 Identity = 117/188 (62.23%), Postives = 149/188 (79.26%), Query Frame = 3
Query: 1635 LVCTKPFPSMPVCFWNDQEGKRYHKSYFNKFKGVWSHGDFCEISSQTGGIVMLGRSDGTLNPNGVRFGSAEIYNIVSPTNFEEISDALCVGQETK-SGERVVLFIKMSEGYSFTSELVKKVRGLIRQQLSARHVPEIILQCTDIPYTASGKKVEVAVKRILNGEDIKLRGAFSNPESLDQYYNIPELK 2195
LVCTKP P P FWND+ G +Y K+YF+KF G+W+HGD+C I+ +TGGIVMLGRSDGTLNPNGVRFGS+EIYNIV +FEE+ D+LCV Q K ERV+LF+KM+ G++F +LVK++R IR LSARHVP +IL+ IPYT +GKKVEVAVK+I+ G+ ++ GAFSNPE+LD Y +IPEL+
Sbjct: 485 LVCTKPIPCQPTHFWNDENGNKYRKAYFSKFPGIWAHGDYCRINPKTGGIVMLGRSDGTLNPNGVRFGSSEIYNIVE--SFEEVEDSLCVPQYNKYREERVILFLKMASGHAFQPDLVKRIRDAIRMGLSARHVPSLILETKGIPYTLNGKKVEVAVKQIIAGKAVEQGGAFSNPETLDLYRDIPELQ 670 The following BLAST results are available for this feature:
BLAST of TCONS_00024002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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