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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024025 ID=TCONS_00024025|Name=TCONS_00024025|organism=Clytia hemisphaerica|type=transcript|length=2556bpRun BLAST on NCBI transcript from alignment at sc0000471:163..13431+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024025 ID=TCONS_00024025|Name=TCONS_00024025|organism=Clytia hemisphaerica|type=transcript|length=13269bp|location=Sequence derived from alignment at sc0000471:163..13431+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024025 vs. Swiss-Prot (Human)
Match: TRPM1 (Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 1.027e-53 Identity = 158/562 (28.11%), Postives = 279/562 (49.64%), Query Frame = 2
Query: 431 PYKELYIWSILCNKPKIADYLKRRGENPIAKLLVGCKLYQNIKHLYKTKVDKNRAIVRQLDSIISKNESEAIEILDTCSNVDKISAGKLVSTPLPQYGNKTLMELAALSGRKNFVGNNRCKREIDKRWRNNIRIQDGDWLNMLVLLGIFLFPIAPYI-------VTIRTKKHDPTKERKTGCCHTCCRYCGWGKW--------------WKKLVLFIQAPVTKYWTNNMSFLCFIGFFIYVILNPFPEDPRKSEWFLLAYIIALTMEEIRQMLLEDGLTIKQKTVRWWQNNWNKIDFVACTIFYLAFIMRITIPFDSARFEYCRFVYAFDIFLWIFRILEMFIIHEMIGKYIIMMLKMXXXXXXXXXXXXXXXCAWGVARFSILYPQNTFDVTSGTSTEKMFKKMLIVPFFQIFGELYVESME-NSLRDNLTVFGTKYSQDKEGNLRAHGEFETFLL-VLTFAYMVLTNILLINMLIAKFNDTFSEVNQQSLVIWHWYNFIFVQEHDRRSVLPIPFSIFGHFKVAILEIIKKINKQTRKCQTDCCKSEKRYKGLNKYFSKHE 2047
P+ EL +W++L + K+A +L +RGE +AK LV CKLY+ + H ++ D I + LD+ A+E+LD D+ A KL++ L + N T ++LA + ++F+ + + + W +R++ L V++GI L P ++ + +T K + + K G K K+ F AP+ K+W +S+L ++ F YVIL P EW +++YI++L +E+IR++L+ + + QK W Q WN D VA + F + I+R+ + Y R +Y DI W R+L++F +++ +G Y++M+ KM+ D+ Y VVI +V++ ++GVAR +IL+P+ + K+ + + +P++ I+GE++ + ++ ++ N Y D+EG +L L Y+++ NILL+N+LIA FN+TF EV S +W + + + R VLP P I H + I+ + + K+ Q E+R +GL + S E
Sbjct: 611 PFHELMVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKAMAH-ESSESDLVDDISQDLDNNSKDFGQLALELLDQSYKHDEQIAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLK--VIMGILLPPTILFLEFRTYDDFSYQTSKENEDGKEKEEENTDANADAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMDGWPSLQEWIVISYIVSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISTFMIGAILRLQ---NQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPEE-------KPSWKLARNIFYMPYWMIYGEVFADQIDLYAMEINPPCGENLY--DEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQ------EERDRGLKLFLSDEE 1151 The following BLAST results are available for this feature:
BLAST of TCONS_00024025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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