TCONS_00024045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024045
Unique NameTCONS_00024045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1101

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024045 ID=TCONS_00024045|Name=TCONS_00024045|organism=Clytia hemisphaerica|type=transcript|length=1101bp
CACTCATGTCTATTTTTTAGACATTTACTTATCTTAAAAGTTTGTGCAAA
GGCGTGTCAAAGCAGTATAAGACTATATTCACAAAATCGACTTCATCATA
GCAATTTGGACCGAAGTGACACAGAACAATATTTTCAAGTATACCTGCCA
ATACCAACGAACCAAAGATGAAGTTGATATTCGTGACCGCTCTTTGTTTC
GTTGCATTTCAAGTGACTTGTGCTCGATATCTTGATTTGGCCGATTTGGA
GGATGACAGATTTAACACGATGCTTGAATCACGGAGACAAAGAGATTATT
ACAACGATATGGCAAGAAGAGATTATTTGAATGCTAGATATGATTATTTC
CAGAGCAAACGTGGTGGACCGTGTGATGATCGCGATGATAACTGTGTCAA
TTTCTTGAGACATGGTAAACGCATTTGTACTGATAACTCAATGCCTGGCT
ATGCCTATATTAAACATAACTGTAAAAAATCATGTGGATTATGCTAAACT
TAAtgttgtttttatataagagcgacaaaaaatctttggaaattcttatt
tgtaatttttagtACTTTGTAAGTGATTTGCTGCGATTTCTGGTAAAATG
TTTTAGAGTTCGTAAAGCCTTCtaaagtttttttgtattttttccttAGA
AATTTTCGTCTTAGACATATGCTGTATAATTGTATTGTAAACTAACGTGA
ATGTGAGAGTTGAAAGTTGACATTATACAGGATGTccgcaaaaaatattg
aaccACCAAAAATATCTTATATATTTTGATCCTCTTCTTTTTCTGATTTG
ACTTTTTGATACCATTGTGCGAGGCTCGAATGGGGGCCTAAATTTTCGAA
AGTAAAACTTTGTAATTATAGATAGAGGCCGGGATATTCGTAATACTTTT
AATATTTCTATGTACTTATTATGAcgaaaaaatgattgaaatacGACAAA
CTTCAGCGGTTTTGTCTTCTTTACTCTTTTTGATGGAACCaagttgaaat
tttaaatgaagatTAGGACGTTCACACCCCTGACCGTTTATAACACACAC
CCACTCGAAAAATATTGTCCCCAATTAAACGAAGTTTAATTTCTTATTTG
A
Run BLAST on NCBI

transcript from alignment at sc0000471:112455..125537+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024045 ID=TCONS_00024045|Name=TCONS_00024045|organism=Clytia hemisphaerica|type=transcript|length=13083bp|location=Sequence derived from alignment at sc0000471:112455..125537+ (Clytia hemisphaerica)
CACTCATGTCTATTTTTTAGACATTTACTTATCTTAAAAGTTTGTGCAAA
GGTATGTCTACATAAATCTATAAGTAACTTGGCAATAAATAAATTGCAAT
TCtattctattttctattttatttctAATTGATAACTAAACTTTATGATT
AGTTGAGAAGAGAACCAGTATTTAAATCTACATGAGCTTTAAAGGGAAGC
TTTCACCATTCTATTTTGCtttcatacatgttttttataagaacattcaa
aatttttaaagcctcaggatctttttatttttttgagtttcaagcctaaa
agtgttcttaacttgttcttattttgacaattttgtgaatattttttacc
attttcccaagaaatcgggtgttttgaatccacaaagccttaagatTTTC
CTAAGTTGCTCTTAGCAATTAAGCCagcaaagccttatgttcttatatag
tttgttcttataaaaaaactcacAATAAAAGATTCTCATGTCAGTGGTGG
GTAATCCTATACAGTAGAGAAATTTTATATTATCTAAATTGAAAATCatg
caaaacattttaaaaacaagacACTAACCACAGTGCATTCAGAATGTTAA
CTATATAACTGATTAATCTTCAAATGGTACGTACCACAAGCTGATAATAT
CAAAAAGATAAGGCAATTTATGTCTCTCCTAAAGCCACTTTGCATGCTgt
gttattttataaaaaaagtggtTGCAGGCTCTGCCGGGGGCTCTGCACGA
AATGCTTTCTGTTTTTATTAGTCTAAATttcagacctctatagatatact
tcctataagaaactttttttgctaaaGTATGAGCAGAAGcctgtttttat
aagcataaaaacaaaatcaattaATACTTAAGTCTCGAATTCAATGATAA
CTACATTGTAGAAGCATACTTAGGCAAGACCCCAAGACCCAAAGCTTATA
AAATTATTACTGTAGGAACTTATAGAAAGTAACTAAAATCTCTTTAGGAC
TATAAGCTTATCAGGATTAGAAAATGACAGCAAATGCATGGGTCACACTG
ATATTTTAAACCTAGATTTCTACCCTTTATAACAGAGAAATCAGCTAGTT
TGTACTCATATACAAAATCATCAAGTACGCGTTtgttttcataagaacat
ccaaaatttttgaagcctgatgttcttaagtttttgagttttaagcctaa
aaatgtcattaaattgttcttaaaaatttgGCCCTCGAAGcctattatgt
tcttatatagtttgttcctataaaaaatgtgtatgctTATGATAAAATCA
ATGTAGCATTTCAACACATTAAAATACCTTTTTATTTAATCTGATTTAAG
ACTATCCCCGTTCAAGGCTGATTGAAAAACCATAATTTATTCAGGCGTGT
CAAAGCAGTATAAGACTATATTCACAAAATCGACTTCATCATAGCAATTT
GGACCGAAGTGACACAGAACAATATTTTCAAGTATACCTGCCAATACCAA
CGAACCAAAGATGAAGTTGATATTCGTGACCGCTCTTTGTTTCGTTGCAT
TTCAAGGTAAGATCTCtatccattttttttttcattaacacAAACTATGC
GATTATGAcagatcaaaataaaattcgaaTTCACCCAAGTATTTTGAAGA
GTCTAAGCTCAATTATGCAATAGATGACCTTCTTTCCACGTACAGTTTGA
TCTCCATAACTTGATCCGCACAGGGAGCACATCAAAATtagttcgagtta
aggaaatttcgagttgtagagtaaggtttataaagtATTAATAACTGAAG
GGACAAGAAAAACTTTCGTGTTTTAGGGGCTCGAGTTAAAGAGATTCTAC
TGTATTTACTTTTAGTGACTTGTGCTCGATATCTTGATTTGGCCGATTTG
GAGGATGACAGATTTAACACGATGCTTGAATCACGGAGACAAAGAGATTA
TTACAACGGTGAGGATTTCTTATTGCTCTTGaaggttttagttttacata
agtgttccctgTTTGATTTTGtgctgagtaaacaaaaaattgctTTTCTG
TCCTTCCTTCTTAGCAATACAATGCAATGTGAAAAGCGTGTAATTTAAAA
CTGATGAGTACGCAAACGCAGACGATAtcaatttattaaaaaacaaaacc
ttccaTCTCACTAATTATCATGAGCTTAATCCAAAAGTTATTTGAGTCCA
GACCTCCACTATAACTCGCGTTGCGTGGCCAGGCAAAATTTAGCCaagat
atccaggctgtaaactttgtttttatatatTGATATTTCTGGTTTACCAC
CTGGTCGTCCTAAAGCCATTTGCATTCCAATATTAGAAGGCAGCACATGC
GTACTTTGTTACTTCAAATATTGCATGGAGCTAAATAACTACCGACCTCG
GGTTTACAAGCATCTAAATAGACCAAGCAGTAGataacagaaaaatcaaa
ataagaaaataatttagaatttggattcccaggcttgataagtggcggcc
tggcagggtgTGTAGAGTGTGCAGTGCACCAGAGAGATCTGataggggcg
ccaaaaaagcttttcaagggggtgccaaaattttttttgatgtttggttg
ggcgatttggcgccctttgacacgtttttagcgccttctataagtgcaat
gtaaattttttatttcacgattttttcaaaactactatcaacatttAATT
gtgaaaagtcaaagcaagagaagtgttgtgtatccaccaggggttaaaga
ggatgctcatccccaaaatgagagattgatcgaaactgcttgctgtggtt
tttgtggtcttatgcggactaactttttcctttttagaatatcttttaag
ctgtttgacctctCTTACACCAATtctttttgcctgcggcgccagtATTT
CAAAGAACCCTGATTCTtgccaactttcgaatttttggggcctctttcag
cgcattgatctttaatagagagtaaagtaagaccaggaaataacaaggaa
atagatatcaagttatcatcACCAtcaccttcgtataaataaaagtttgt
taactcagagattccgggcgttactttcaaccagtcactgttcttacagt
ttaatattttcacttaatggtggAGGGCGCAANNNNNNNNNNNNNNNNNN
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Ntggtcaatgcaatgatggaatcaatagtgctggtcaatgcaatgatgga
atcaagggttttggtcaacacaatgctggaatcaatggtgctgatcAATG
CAACGATGGAGTCAATACTGCtcgtcaatacaatgatggaatcaatggtg
ctggtcaatgcaatgatggaatccaTGGTGCTGgtaatgcaatgatgaaa
tcaatggtgttggtcaacacaatgctggaatcaataatgctggtcaatgc
aatgatggaatcaatgctgctggtcaatgcaatgatggaatcaatggtgc
tggtcaattcactgatggaatcaatggtgctggtcaatgcaatgatggaa
tcaatggttctggtgaattcaatggtggaatcgatggtggTGTACTGGCG
GATACAATGCTGCACTCACCAATGGTACTGTTGTGTAGGTGAATGCAAgg
ttagggattgtgcattttttgtaagcattatctttataagaatacaatca
ataacttttgattcaaggggtattgactttcggcgattggttcattcgaa
gcaacttggggtttgtgcaaaatgtgagcatatctatttttcttataagc
atcacctttataaaaaattattgatagatttcttattgattgtattctta
taaagataatGCTTACAAAAAAATCTCTAACTTGCATTCACCTGTACAAC
AGTACCATTGGTGAGTGCAGCATTGCATCCACCAGTACACCACCAACGAT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AGTTtgttaactcagagattccgggcgttactttcaaccagtcactgttc
ttacagtttaatattttcacttaatggtggagggcgcaaataaggaaaaa
aataccaggggcgccaatttcatagtttgcaccaccaagaaaattaagcc
aggccgctactggttGATGAtattctgtaattcgaatcctacatttataa
acttaaaaatttccaaatcggGTGACAGACAAGTGGGAAAAGAAAGAGTG
AGAattcgttgttactaaaagtggtaacggtaggtaatgataggtaacga
caagtaacgacaagtaacggtaggtaacgacaggtaacgatgaagtaacg
gtcggtaacaatgaagtaacgcaagtaacgaggggtaacgaaaaagtaac
gaagtaacgatagggaaaaagctgaaaatggtggccctgagctgtcgaac
tatcaaaatttgtaaatttctgcGCCAGAGCTAATGGTCCCGGTGATTTT
GGGAGAATCTAATGACTCtggttaatctattcaagaattttggaaatctg
atgattgtacagcaggatctgatcgttctggtgaatatgactatggagat
aataaatccaattgtttttattgtaaattggtgtctgtgaataaactgaa
agatttgacggctttggtgaatcaatggtgttggtcaatgcaatgatgga
atcagtggtgatggtcaatgcagtgatggaatcaatggNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatggaat
caatggttctggtgaattcaatggtggaatcgatggtggTGTACTGGTGG
ATACAATGCTGCACTCACCAATGGTACTGTTGTGTAGGTGAATGCAAggt
tagggattgtgcattttttgtaagcattatctttataagaatacaatcaa
taacttttgattcaaggggtattgactttcggcgattggttcattcgaag
caacttggggtttgtgcaaaatgtgagcatatctatttttcttataagca
tcacctttataaaaaattattgatagatttcttattgattgtattcttat
aaagataatgcttacaaaaaaatctctaacttgcattcacctgtacaaca
gtaccattggtgagtgcagcattgcatccaccagtacaccaccaacgatt
ccaccattgaattcaccagaaccaatgATTCCACCAGAACcaatgattcc
atcattgcattgaccagcaccattgattccatcattgtattgaccagcac
cattgattccatcattgcattgaccagcagtattgattccatcattacat
tacGACCAAcagcattgattccatcattgtattgaccagcaccattgatt
ccatcattgcattgaccagcaccattgattccatcaatgtattgaccagc
accattgattccatcaatGTATTGACCAGccccattgattccatcattgc
attgcccagcaccattgattccatcaatGTATTGACCAGccccattgatt
ccatcattgcattgaccagcaccattgattccatcattgcattgaccagc
accattgattcaatcattgcattgaccagcaccattgattccatcattgt
attgaccagcaccattgattccatcattgtattgatcagcatcattgatt
ccatcattgcattacGACCAAcagcattgattccatcattgtattgacca
gcaccattgattccatcattgcattgaccagcagcattgattccatcatt
gcattacGACCAAcagcattgattccatcattgtattgaccagcaccatt
gattccatcattgtattgaccagcaacattgattccatcattgcattgac
cagtaccattgattccatcattgcattgaccagcaccattgattccatca
ttgtattgaccagcaccgttgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccagcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccagca
ttgtattgaccagcaccattgattccagcattgtattgaccagcaccatt
gattccatcattgtattgaccagcaccattgattccatcattgcaatgac
cagcaccattgattccatcattgcattgaccagcaccattgattccatca
tttcattgaccaacaccattgattccatcattgtattgaccagtaccatt
gattccatcattgtattgaccagcgccattgattccagcattgtatcGAC
Caccaccattgattccatcattgtattgaccagcatcattgattccatca
tttcattgaccagcgccattgattccatcattgtattgaccagcaccatt
gattccatcattgtattgaccagcaccattgattccagcattgtattgac
cagcaccattgattccagcattgtattgaccagcaccattgattccatca
ttgcattgaccaacaccattgattcgccaaagccgtcaaatcttccagtt
tattcacaaacaccaatttacaataaaaacaattggatttattatctcca
cagtcatattcaccagaacgatcagatcctgctgtacaatcatcagattt
cccaaattcttgaatagattaaccaGAGTCGTTAGGTTCTCCCAAAACAC
CAGGACCATTAGCTCTGGCgcacaaatttacaaattttgatagttcgaca
cgtcagggccaccattttcagctttttccccatcgttacttcgttacttt
ttcgctacccctcgttacttgcgttacttcatGGTTACCGACCGTTACGt
catcgttacctgtcgttacctaccgttacttgtcgttacctatcgttacc
tatcgttacctaccgttaccacttttagtaacaacggtGAGAATTTCTTT
GTATCTCTTTAATTTAGCCTTTCGTTTTAACCAGTCTTTCGAACATATGT
TTAAATTCATTCGTTCGTTATTCTTAGATATGGCAAGAAGAGATTATTTG
AATGCTAGATATGGTATGTAAAAGGATAAtgagatggtttgagatatttg
acaTGTAGATTCCTTCTAGTTTCCTGAGCGAACCCTAAAATCATTTTGGC
TTAAATGTTTTCCAGAAAAGTACAATCCCTTCTCATAAACCCACTAGGAA
TCcttctcactggaaaaattggccaaaatatcgtccccagtggaaaatta
tactccgatttttgtccccgctgaaaacaATTAGATAAACAAACCTTTAC
TGAAACATTTTGTGCTATTTCTTCCATCGCCCActgaattttatttcaat
ggaaTTAAAATTcccaacctttaaaaacaaTACCATTGCACAACGAGTTT
tggtctattatttttacacccATTGGATGAAAgtgtttgagttatggaaa
CTCAACTGTATTTCTTTCGTTTAGATTATTTCCAGAGCAAACGTGGTGGA
CCGTGTGATGATCGCGATGATAACTGTGTCAATTTCTTGAGACATGGTAA
ACGCATTTGTACTGATAACTCAATGCCTGGCTATGCCTATATTAAACATA
ACTGTAAAAAATCATGTGGATTATGCTAAACTTAAtgttgtttttatata
agagcgacaaaaaatctttggaaattcttatttgtaatttttagtACTTT
GTAAGTGATTTGCTGCGATTTCTGGTAAAATGTTTTAGAGTTCGTAAAGC
CTTCtaaagtttttttgtattttttccttAGAAATTTTCGTCTTAGACAT
ATGCTGTATAATTGTATTGTAAACTAACGTGAATGTGAGAGTTGAAAGTT
GACATTATACAGGATGTccgcaaaaaatattgaaccACCAAAAATATCTT
ATATATTTTGATCCTCTTCTTTTTCTGATTTGACTTTTTGATACCATTGT
GCGAGGCTCGAATGGGGGCCTAAATTTTCGAAAGTAAAACTTTGTAATTA
TAGATAGAGGCCGGGATATTCGTAATACTTTTAATATTTCTATGTACTTA
TTATGAcgaaaaaatgattgaaatacGACAAACTTCAGCGGTTTTGTCTT
CTTTACTCTTTTTGATGGAACCaagttgaaattttaaatgaagatTAGGA
CGTTCACACCCCTGACCGTTTATAACACACACCCACTCGAAAAATATTGT
CCCCAATTAAACGAAGTTTAATTTCTTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013504XLOC_013504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024045-exon-sc0000471-1491911889:112455..112505TCONS_00024045-exon-sc0000471-1491911889:112455..112505Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1510915933:112455..112505TCONS_00024045-exon-sc0000471-1510915933:112455..112505Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1575043694:112455..112505TCONS_00024045-exon-sc0000471-1575043694:112455..112505Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1491911889:113849..114010TCONS_00024045-exon-sc0000471-1491911889:113849..114010Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1510915933:113849..114010TCONS_00024045-exon-sc0000471-1510915933:113849..114010Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1575043694:113849..114010TCONS_00024045-exon-sc0000471-1575043694:113849..114010Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1491911889:114320..114412TCONS_00024045-exon-sc0000471-1491911889:114320..114412Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1510915933:114320..114412TCONS_00024045-exon-sc0000471-1510915933:114320..114412Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1575043694:114320..114412TCONS_00024045-exon-sc0000471-1575043694:114320..114412Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1491911889:124332..124367TCONS_00024045-exon-sc0000471-1491911889:124332..124367Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1510915933:124332..124367TCONS_00024045-exon-sc0000471-1510915933:124332..124367Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1575043694:124332..124367TCONS_00024045-exon-sc0000471-1575043694:124332..124367Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1491911889:124779..125537TCONS_00024045-exon-sc0000471-1491911889:124779..125537Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1510915933:124779..125537TCONS_00024045-exon-sc0000471-1510915933:124779..125537Clytia hemisphaericaexon
TCONS_00024045-exon-sc0000471-1575043694:124779..125537TCONS_00024045-exon-sc0000471-1575043694:124779..125537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000471supercontigsc0000471:112455..125537 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.349067	0	0.308406	0	0	1.36548	1.36442	78.7898	114.879	97.2352	42.1073	0.175176	0.844672	0	0.0803471	256.854	301.644	0.000395313	0.221214	687.799	661.498	57.3554	59.1022	31.3444	27.0837	488.622	437.391	1.25698	2.10091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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