TCONS_00024052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024052
Unique NameTCONS_00024052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024052 ID=TCONS_00024052|Name=TCONS_00024052|organism=Clytia hemisphaerica|type=transcript|length=1724bp
ttcagaAATACATAAAATAATCTATTAGAAGTACAATTGGCTGATGACGG
AATGAGAGCGTTGGTTTTGTTATTTTGCCTTTGGTATGTCAGCTTCATTT
ATGCAGGAGATCCAAGAAATGGCCCGtgCCGAGCACTTGCATTACAATGT
ATAGATGACTTAACAGCTGGTGGGATGTTTTTAAAATGCGAGCCATACGT
AAGATGCCATTATAATGTCAACGACCCTAGACTGATACAGTGTGTGCATG
ATGCGTTGCGTTGCGAAAGAGCAATGCCATCATTCATCCCTATGTTGCGA
TACACATGTTCTCTCAATGCTTTCAATTGTATGGAAGCCACTCATTAATG
ATGACgttatatttttgatatttgtgacgtaacgttttatacggaagcac
cgaAAATAGACCAGTTTTTTTGCCACTAACTTTGAATTTGGAGCAATGAA
ACAAATGTCAAACGCCCTattctgaatcgcagacctctatagatatactt
cctctcttctataagaaactttttcactagaggatgagcagaagccttcA
AACGCCCAGGCTatttcgggtgcttccgtataataCATTACATCGTCATT
ACATCGGATTATAAACATACTATTCAGTTATTATATTTATGATATAAAAA
TCAAACTCTAGAAAGCCCCCGATGATTCAAAACAAACGTTTTTACAAATG
TTGCTTTGGGTAGCTTTGAGTAATTTTTGAATTCGAATTGTCTTTAAAGC
TGTTATTGCAATAATTTATGTATAATTTAAGATtaatatataaaaatatg
taaaattctCAACTAAAATTAATGTGTCATATCAGTTTGAACAGAATCTT
CAATTGCTCTAACATTGCTTTTTAAACCACATCATTAAATACCCCTAAAT
AGTTTACTTGAAGAAATACGTCGGTTCTTAGagacacctccttctcacag
acccggtgggaacCCCTTCCActggtttgtgagaagggggtgtttcacAG
TAGGTGATAGTTTACCATATAGGCCACTTACGATCTTCTTTTGGAAGTAA
ACTAGAGTAAACTCAACCATTGAGTTCAAGATATTGTCCACTAAATCACT
TAGATTCGGTTGGATTATCATAATCTGTCCCGTTTTTTATATCCTCATAA
GTCTCGTTGACAGGCGGCCGCGCGGTATTTAAGTCTTGGTACGTCTCTGG
AGTCCTTTGAGCTCCCTGTAAATCCGCATATGTCTCTGATGTTTTTGAAG
GATTATTAGACCCATTGTAATTTCGAGGATTATTTTTATGACCAGGTTGA
GCAACCCCTTCGTATATATTTCCTGGTTGATAGTCTAGATCTGTATATAT
CTCTCCTGGTGTAGTCTGCTGCTTATTATTTTTAGGGTCTGTTAAATCTA
GATATTCATCCTGTTCTGACAAGGTTGGTATTTTGTCTTTTGGTGAATTA
ATAGGCTGATACTGCTGATCGACCCTTGTGTTTGAATTTAAGGCTGTATA
TTGTTGTGGGTTATCATTCGCCATATCTATATAACCGTTATTGTATGCAG
CTGAGACTGGGCGGCTATTTGGTCTTGGCGATCGAGGAACGGGCGGCGCT
GGGCTATTTCCACCGTTGTTGTTTATATGTAGGTTACCAGGGTGATTAGT
TTGATTGAACAAGGCCtagaaatgaaaagaaagtGATTAATCATTTGAGA
GCAGATTggaatttgtaaaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000471:145685..149690-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024052 ID=TCONS_00024052|Name=TCONS_00024052|organism=Clytia hemisphaerica|type=transcript|length=4006bp|location=Sequence derived from alignment at sc0000471:145685..149690- (Clytia hemisphaerica)
TTCAGAAATACATAAAATAATCTATTAGAAGTACAATTGGCTGATGACGG
AATGAGAGCGTTGGTTTTGTTATTTTGCCTTTGGTATGTCAGCTTCATTT
ATGCAGGTATGTTACCTCAAATTTGTAAATATCAGGTTATATTCCGGTTT
ATCATTTGACAGTAGCGTAGACAAGAGGGGCGCAAAATTTGTGTAAGAGA
GCAGATTTTTATGACACTGTAATCATCTATTCATAATGTAAAAGGATGAT
TACTGCTCTCCTACACAAATTTTGCGCTATTCTTGTCTACGATACTGTTA
ATTCCAATAAGTTTATGGCTTTTTTAAAGTCTGTCTTAGTACAATGAAAA
GCAAATTCCTACCTTCCATCAGAAAAGTGAAAGCAGCTCTCGTTCACCTT
CGACTGCAGTCGCAAATTTATTGTACAATCCCAGACAAATTTTGTCGAAC
GAAAATAGAACGAAAGAGACAGAATATAGAAAATTGTAAGAAACCCGTCC
GATTTTTGAGGTCCTTTCAAGTGATTTTCCAACAATGTCTAGTTCGTCCA
AGATTGAAGAAAATGATAATAGTGATTTTTATTTTCGTTTTATTTTCTAG
GAGATCCAAGAAATGGCCCGGTAAGAAAAATTCATATTTATTTTGTTTTC
AAATTTTGAAATGTTTACATAAAAATGTCGTCACAAATTCTTTTTTTATT
AATAACCAGTAAGTTTTTTAGGTTCACTGTCACAAGGAACTATAAGAAGC
CAATCTATACATTTAACGAACTGTCTGTTTATCAGGCCAAACTTATGGAA
AATATTCTTGAAAGATTCTGTGCCAGACCCGGTGAGAAAGTGGTGTGACA
ACTTCCCCTTATTTATGAAAGTTTCCTGTTGGGGCAAATATCCTGAAACC
TTATACGGTTGGAGTTATAGAAAATTTTATAACTGAAACTGATGTATTTC
GGTGTCTTTATTTTCAAATATTTCAGTGCCGAGCACTTGCATTACAATGT
ATAGATGACTTAACAGCTGGTGGGATGTTTTTAAAATGCGAGCCATACGT
AAGATGCCATTATAATGTCAACGACCCTAGACTGATACAGGTAAATATAA
TCAAGCTGATTTTAATACACGTTTTCTTTATTAAAACATCCGTTCATATT
TTTTGAAGGCTTCGGATGTTCTTAACTTTTTAAGATTCAAGCCTAAAAAT
GTTCTTAACATTTTCTTATTTTTACCATTTCGTGGGTATTTTAGTGCGTT
TTTCTAAGAAATCGGCTTTTTTAAAGTCCCCAAAGCCTTATAATGTTCTT
AACTTGTTCTTAGAATTTTGGCTATCGAAACCTTATGTTCTTATATAGTT
TGTTCTTATAAAAACGTGTATTTAGTCAGCTCTCATTAAATCGAATTCGA
ACGGAAAGTCATCTTTTTTTGAATACACCTTTTCGACCGTAGCCGCCAAT
TGTCGCGCGGGCATTTTTTTGTCCACTTTATCCCACTAAAACCGTCCCAG
TCCCTTTTTTGCACCTAAAGACAATAGAAAAATGTGTCAAAAAAGGATTG
GATCGAGTTTAGTGGGATAAAAGTGGCACGGTCGAAAAGGTGTATTACGG
AGAAATTCAAATTATAGAGATTTCCTTGAGAGGGTTTCTACCATTGACGT
AGCCAAGCCAGAGTATCAGACGTGATGTCTAATCTCTGTTCAACAAGTTT
TGACTACACTTGTACAAAGAGGGGGTTTATCTAACGAATCCTGCATTACT
AAAAATAGACAAAAAGAATGACAAATTCCATATGGGTTTATCTTACTTAT
TAGGCGAGACCAATTTAATTTGTTGTTCTACGGGCAGATCGTTAGAAAAA
TATGTGTCGGTCGGTCGGTAAAATAAGAATAAATTTTTCATTTATCAGGG
TAAGGTACCGAAAATATTTTCCCAAAAAATATCTGGATAAAAAATTCAGA
AAATTTCTTAAATTAATTTTCAGCTTTATTCAAATTTAAGCTATACAATT
AACTATCGTGTAAAATATATTGTAGTTGAAATTGAATATTTTTTTTTTTT
GATTTTAGCAAAAATAGGGTCGGTCGGGCCCGTAGAACAACAAATTAAAT
TGGTCTCGCCTTATATTAACATGATCATATTTCATCACACCCACACCCCA
AGTTAAGGAGAAAAACTTTAAAGAGTGAACAGTCAACTCTTCTATTTCTT
CGAATAATTTTGTAATTTGAATGAATTCTCATGTCTCGTCAATAGTCGTC
AGAGGTTGATATTTTCTTTCAAAAGTCGGATACTGTGGGTAGGAAGTCGG
ATACTGTGGGTAGGAGTGGAATCTTATGCAAAACGACCGTAGAAATGAAG
GGTTTTTAGATGGGTTTTTTGACCAAACTTGCTCCACATCCGTGTCAATC
CAATGTGAAAAAGCTTGTAAATCAAAATTGATGAGTAAAGCAAACGATAT
CACTCTTATATTAAAAACAAAACCTTTAAATATATAATTGACATTACTGT
AACTCAACTTCTTTATTTCTAGTGTGTGCATGATGCGTTGCGTTGCGAAA
GAGCAATGCCATCATTCATCCCTATGTTGCGATACACATGTTCTCTCAAT
GCTTTCAATTGTATGGAAGCCACTCATTAATGATGACGTTATATTTTTGA
TATTTGTGACGTAACGTTTTATACGGAAGCACCGAAAATAGACCAGTTTT
TTTGCCACTAACTTTGAATTTGGAGCAATGAAACAAATGTCAAACGCCCT
ATTCTGAATCGCAGACCTCTATAGATATACTTCCTCTCTTCTATAAGAAA
CTTTTTCACTAGAGGATGAGCAGAAGCCTTCAAACGCCCAGGCTATTTCG
GGTGCTTCCGTATAATACATTACATCGTCATTACATCGGATTATAAACAT
ACTATTCAGTTATTATATTTATGATATAAAAATCAAACTCTAGAAAGCCC
CCGATGATTCAAAACAAACGTTTTTACAAATGTTGCTTTGGGTAGCTTTG
AGTAATTTTTGAATTCGAATTGTCTTTAAAGCTGTTATTGCAATAATTTA
TGTATAATTTAAGATTAATATATAAAAATATGTAAAATTCTCAACTAAAA
TTAATGTGTCATATCAGTTTGAACAGAATCTTCAATTGCTCTAACATTGC
TTTTTAAACCACATCATTAAATACCCCTAAATAGTTTACTTGAAGAAATA
CGTCGGTTCTTAGAGACACCTCCTTCTCACAGACCCGGTGGGAACCCCTT
CCACTGGTTTGTGAGAAGGGGGTGTTTCACAGTAGGTGATAGTTTACCAT
ATAGGCCACTTACGATCTTCTTTTGGAAGTAAACTAGAGTAAACTCAACC
ATTGAGTTCAAGATATTGTCCACTAAATCACTTAGATTCGGTTGGATTAT
CATAATCTGTCCCGTTTTTTATATCCTCATAAGTCTCGTTGACAGGCGGC
CGCGCGGTATTTAAGTCTTGGTACGTCTCTGGAGTCCTTTGAGCTCCCTG
TAAATCCGCATATGTCTCTGATGTTTTTGAAGGATTATTAGACCCATTGT
AATTTCGAGGATTATTTTTATGACCAGGTTGAGCAACCCCTTCGTATATA
TTTCCTGGTTGATAGTCTAGATCTGTATATATCTCTCCTGGTGTAGTCTG
CTGCTTATTATTTTTAGGGTCTGTTAAATCTAGATATTCATCCTGTTCTG
ACAAGGTTGGTATTTTGTCTTTTGGTGAATTAATAGGCTGATACTGCTGA
TCGACCCTTGTGTTTGAATTTAAGGCTGTATATTGTTGTGGGTTATCATT
CGCCATATCTATATAACCGTTATTGTATGCAGCTGAGACTGGGCGGCTAT
TTGGTCTTGGCGATCGAGGAACGGGCGGCGCTGGGCTATTTCCACCGTTG
TTGTTTATATGTAGGTTACCAGGGTGATTAGTTTGATTGAACAAGGCCTA
GAAATGAAAAGAAAGTGATTAATCATTTGAGAGCAGATTGGAATTTGTAA
AAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013509XLOC_013509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024052-exon-sc0000471-1575043694:149585..149690TCONS_00024052-exon-sc0000471-1575043694:149585..149690Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1575043694:149071..149090TCONS_00024052-exon-sc0000471-1575043694:149071..149090Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1575043694:148601..148714TCONS_00024052-exon-sc0000471-1575043694:148601..148714Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1575043694:145685..147168TCONS_00024052-exon-sc0000471-1575043694:145685..147168Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1510915933:149585..149690TCONS_00024052-exon-sc0000471-1510915933:149585..149690Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1510915933:149071..149090TCONS_00024052-exon-sc0000471-1510915933:149071..149090Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1510915933:148601..148714TCONS_00024052-exon-sc0000471-1510915933:148601..148714Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1510915933:145685..147168TCONS_00024052-exon-sc0000471-1510915933:145685..147168Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1491911889:149585..149690TCONS_00024052-exon-sc0000471-1491911889:149585..149690Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1491911889:149071..149090TCONS_00024052-exon-sc0000471-1491911889:149071..149090Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1491911889:148601..148714TCONS_00024052-exon-sc0000471-1491911889:148601..148714Clytia hemisphaericaexon
TCONS_00024052-exon-sc0000471-1491911889:145685..147168TCONS_00024052-exon-sc0000471-1491911889:145685..147168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000471supercontigsc0000471:145685..149690 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.7225	17.5608	10.6737	6.14789	0.308591	0	0.504429	0.658254	0.64538	0.429935	5.3632	12.6353	13.7926	10.9905	9.4955	20.2508	4.73754	5.14407	0	0	3.6584	3.92257	5.75605	5.2603	1.20713	2.1343	2.2374	0.891479	0.533288	0.740952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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