TCONS_00024053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024053
Unique NameTCONS_00024053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024053 ID=TCONS_00024053|Name=TCONS_00024053|organism=Clytia hemisphaerica|type=transcript|length=858bp
TGGTAAGAGAAGTGATGGAATTAAAAATGAAGTCTTTGATTGTACTTTTA
AGTTTGGTAATAACATATGCAAAAGGTATTGCAGCTCAAGGACCTTGTGG
TGGCTTGGGAAGCAAATGCAAGACAGATCTGTTTTCGGGTGCAGATTTCA
atgtttgtgaaaaatttgtGCGGTGCGAATATCTGGAGGATGGCAATAAA
CCACGAGAACAATGTGTCCAAAGGTGTTCGTATACGGCGATGGGATGTGA
GAAACAATATCCCGTTTCGATGTGGTGGTTTAGACCACTACGAATTGCTT
GTGGACAGACCGCCTACGATTGCTTGAACAGGTGTAGACTGGTTCATGAC
AGTGTCGGACGAAAAAGAACCATGTTTAAAGATTTCGATAAATTTGAAGA
ACAAAAAAGAGATCTTTATGAAGATGCGAGAAGAGACAGAAGAATGGAAA
CCAGACGGCCACAACATGACGACTTCAATGAATTTTATGATTTCGAATTT
GacaaatattaaattatttgaCACCATGACAGTGAAATTTTATCATTATA
ACAACTATATTCTATGCTTGACTATTTTAAACACCTCTGTCTAATAGCCC
CGGTGTTAGTTTTTCCATCActggggatgaaattttttatAGAAACCCCA
ATGGAGATAGAAGTTCTATTGTTCCCTGATCAAAAATTGTAgcggggatg
gttttgaagcgcaattttttccattgaatttcaagttgggatgaaataaa
aatcaatttccaaGTGGGAAGAAATTATAAGATATTTTTCCGGCGAGGAC
AAAATGTGgggcaattttccagtggggctggggtccgaGCGGGTCTGTGA
AACAGGTG
Run BLAST on NCBI

protein sequence of TCONS_00024053-protein

>TCONS_00024053-protein ID=TCONS_00024053-protein|Name=TCONS_00024053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
VREVMELKMKSLIVLLSLVITYAKGIAAQGPCGGLGSKCKTDLFSGADFN
VCEKFVRCEYLEDGNKPREQCVQRCSYTAMGCEKQYPVSMWWFRPLRIAC
GQTAYDCLNRCRLVHDSVGRKRTMFKDFDKFEEQKRDLYEDARRDRRMET
RRPQHDDFNEFYDFEFDKY
Run BLAST on NCBI

transcript from alignment at sc0000471:164837..169905-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024053 ID=TCONS_00024053|Name=TCONS_00024053|organism=Clytia hemisphaerica|type=transcript|length=5069bp|location=Sequence derived from alignment at sc0000471:164837..169905- (Clytia hemisphaerica)
TGGTAAGAGAAGTGATGGAATTAAAAATGAAGTCTTTGATTGTACTTTTA
AGTTTGGTAATAACATATGCAAAAGGTAAAGAGATATTTAGGTATACTTT
TGTCAACAAACACTAGGTTTTCCTTCCCAGCTGACACACAACGTTGTTTC
AACGTTGATCTAACGTTATATGGACGTTGTGAATATTAGAAAAACGTTGA
AACGACGTTTTGTGTCAGCTTGTGTGGAAAAATACCAATTTTTAGCGCTT
TTGACTTTGAGCTTCTTACAAAGTCTTCCTGGAAAGTAGACAAACTCCTT
CAAATATTTTTTCTGCATTTGGTCTGTACTAAATTTGGTCTTATTTGTGT
GGATATTCATTCGTAGTCTAAACTCAACTAATCAACTCTTCAGATGACTC
CAAAGCTGAAAATTGACGAAAAAAAAACAAATTCAAAAATTTTGGTTGCT
AGGCAACCTAGGCTGGTTGCTAGGAGCAAAATATCATTAGCTTTTGAATA
TGTATTCACAGACTCTACATTTTATATGCTTTCAGAAAATATATAGTTTT
ACAGGTGTATATAAAACCATCAAAAAGTCATTCTTCATCGCATTCGCCTA
AAAGTCAAGGAACCCTAAAATACTAAAATAATGTGCGGATGCAAAGGGTT
AAAGTATAAACTGTTTGAATGGCTTTTATCAAGCACCTTTGAAACTCCTT
AACTAAAATATATCCAAAAGATGAGGTAATATTGGCATGTTCCATAATGT
GGATGCGTAATTTCTATGGACACTTGTCTTTACGCACACCCTGAAAAAGA
CGTCAAAACAACGTTTTTCTAACATATTCATAACTGTCATTTAAGTCGAG
ACAGCGTTCTATGTTTGCTGGGTACTTATTCAATTTTTAAATCATATCAT
CTCATTTTTCAGGTATTGCAGCTCAAGGACCTGTGAGTAAAATGCAATTA
TTTCATTAAACATTAAAAAGTTTATTTTCAACCCCTTGCATTTTATTTTA
AAGCTGAGAAATTAAAATTTCAAGTAATGGTAACAATTCTTCAGCCCCTA
CTCTCGGATACCTAATAGCCGCCCCCCCGCTAATTTGTAATTAATTTTTC
AAAAATTTTCTACCCAGGACATTTTCATTTTAACCCCTCCGCTTATTCTA
ACCATCCCGGCTATTAGGTACGCGCTCGGGTGAAACAAGGCATGTCCCAA
ATATATTTTGCGTGACGCACACCGCTTCCCATTATACATTAACTTTCATA
TTTAGCTCATATCGTCTCAACGAGAGGATTTCGAAAAGTGCTGGGTCAAA
AATTTACATCAAGCCAATCTCAAGATATCGGTCAAAAACTGATTTTGACG
TTATCAAATACATGGAAAAAAACACGTCAAAAAGACAATTTAAATGACGT
CATTATTGAAAAAAGGCGATAATTCCGATTAACTTACTACAATCAAAGTA
GAGTTTTGACTGGAGATGTAAATTAACGATTCTAAAATATTTCATGAAAA
AAAATTGAAAATTCATGATGACCTCAGCATTTTTTGACGTATTTTTATTT
TTCCCGACAACAAATGACGTCATTCAAATTTTCTGAAAATTTTTGAACAA
ATATTTCAGAATCATTAATTTACAACTCCGGTCAAAATTTGGTGTTGATT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCATTGAACACAAACTTCCGTTATCTTA
AAAAGACATATCATCGAGGCTTACAGACACAAAATTTTGACTAATGTAGA
AAGTTTAGAAGTATAATTTTTAATATTGTATTCGGCATTTATTTTAAGCC
AAAACGATGTCAGGAATTAACCCACATTGTAGTATTNGATATGATTCTTT
TGAGCTATATATGAACGTTAAGGAATAATTGGAAGCGGTGCGCGTCACGC
AAAATATATTTGGGACATGCCTTGTTTCACCCGAGCGAAAGTAAATATTG
ACGAATGTGCACGAAATCTATTATTCTGTCACTTAGGGAAATAATTGTGA
ATATTTCCCATAGTGTGGTGGCTTGGGAAGCAAATGCAAGACAGATCTGT
TTTCGGGTGCAGATTTCAATGTTTGTGAAAAATTTGTGCGGTGCGAATAT
CTGGAGGATGGCAATAAACCACGAGAACAATGTGTCCAAAGGGTGAGATG
ATAAATTTGTAGCCTATTTTGTTAACTACCAAGTTCATTGTCTATAGTCA
GGGTTATCCCTTTGTAAGCGCTGTTTTTTTTTTGAAAAAGTTAAAATTGT
TTGTTTTTCCTCTAGTATTTGGATTGGAATTTTTTTGGTTTTACTAAATT
TAATTATAAACTGTACTGAGAATTTTAAAACTGTAATGCACTTAAGAGGT
GCCCTATACAAATCTTTTTATAAGAACAAACAGTATAAGAACATAAGGCT
TCGATGACCAAAATACTAAGAACATACTTAAAAACATTTTAAGGCTTCGT
GGTCTCCAAAAGGCCCTATTCCTTAGGAAAATACACAAAAATACTCAAAA
AATGGCGAAAATAAGAACAAGTTAAGAACATTTTTAGGCTTAAAACTCAA
AAAGTTAAGAACATTCTAAGATCCAAAAATTCTTATAAAAATAAACTGTA
TATTAGAATCTAGTTTATACGTAAGAAATCTCAGCGCTTTTGAAATTTTA
GAGAAGACGTATATATTCATCAACTAAATGTCTTTCTTGTTTTCCAGTGT
TCGTATACGGCGATGGGATGTGAGAAACAATATCCCGTTTCGATGTGGTG
GTTTAGACCACTACGAATTGCTTGTGGACAGACCGCCTACGATTGCTTGA
ACAGGTGTAGACTGGTGGGTGTTGTGGCGTCAAAAATTTGGCGCCCTTTA
AAAGATATTCTGTTTTTCTAGTGAGGATTGGAGTGGAGTGTTTTCTGCAC
CCCTCTCACCCCAATAACAGAGTTATGCAAGAAAAATTATTTATTCCCAA
TACAATGCAATGCAAAAGAGACTTATGAAAGTCAGCCTTTTTTGTAATTA
ATAAGGACTTTTTTACGTTTTAATGATCGCTGCCTAAGCTGGGTTNCTTA
GGAAAATACACAAAAATACTCAAAAAATGGCGAAAATAAGAACAAGTTAA
GAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAACATTCAAAGATCCA
AAAATATATATTAAAATCTAGTTTATACGTAAGAAATCTCAGCGTTTTTG
AGATTTTAGAGAAGACGTATATATCTTACTATACTAAACGAGTTTATGAA
AAATGTCTGTAACGCTAGCCCAGTAACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTCTACACTGCTATTTGTAAACGAAAAAAGTTCTGAC
GTCAATTTCATGAAAAAGTACTGCGACGTCACAAAGTTTCAAATAAAAAG
GTGTGGCATTTTTATTGCACGATTTCGAATTATTTTATATCAAAACACGC
AACAAAATCCAACATTATTGTTTGATGATTAAACTTCGTCTAACATTATT
TAAAAAGGTTTCAATGTTGGTTGCATTGCATATGCACCGGTCTTAAGCTG
TCTGCATGTGAAGCCAACAAACGGGAAAACCTTCAGTGCTCAATCGCAAA
GCGCGATCCTCTCCTTCACAACTAAGACTTTTTCTTTCCTAGAAGCAANC
AATATTGTGTGCCAGTTGGGTATCCAGGAAAACATTCAACATTCTAGATT
ATTCTATTCTAGATTATTAAAAGAAATTTTGTATTTCATTTTATTTATTC
AGGTTCATGACAGTGTCGGACGAAAAAGAACCATGTTTAAAGATTTCGAT
AAATTTGAAGAACAAAAAAGAGATCTTTATGAAGATGCGAGAAGAGACAG
AAGAATGGAAACCAGACGGCCACAACATGACGACTTCAATGAATTTTATG
ATTTCGAATTTGACAAATATTAAATTATTTGACACCATGACAGTGAAATT
TTATCATTATAACAACTATATTCTATGCTTGACTATTTTAAACACCTCTG
TCTAATAGCCCCGGTGTTAGTTTTTCCATCACTGGGGATGAAATTTTTTA
TAGAAACCCCAATGGAGATAGAAGTTCTATTGTTCCCTGATCAAAAATTG
TAGCGGGGATGGTTTTGAAGCGCAATTTTTTCCATTGAATTTCAAGTTGG
GATGAAATAAAAATCAATTTCCAAGTGGGAAGAAATTATAAGATATTTTT
CCGGCGAGGACAAAATGTGGGGCAATTTTCCAGTGGGGCTGGGGTCCGAG
CGGGTCTGTGAAACAGGTG

Coding sequence (CDS) from alignment at sc0000471:164837..169905-

>TCONS_00024053 ID=TCONS_00024053|Name=TCONS_00024053|organism=Clytia hemisphaerica|type=CDS|length=2550bp|location=Sequence derived from alignment at sc0000471:164837..169905- (Clytia hemisphaerica)
GTTCATGACAGTGTCGGACGAAAAAGAACCATGTTTAAAGATTTCGATAA
ATTTGAAGAACAAAAAAGAGATCTTTATGAAGATGCGAGAAGAGACAGAA
GAATGGAAACCAGACGGCCACAACATGACGACTTCAATGAATTTTATGAT
TTCGAATTTGACAAATATTAATGTTCGTATACGGCGATGGGATGTGAGAA
ACAATATCCCGTTTCGATGTGGTGGTTTAGACCACTACGAATTGCTTGTG
GACAGACCGCCTACGATTGCTTGAACAGGTGTAGACTGTGTGGTGGCTTG
GGAAGCAAATGCAAGACAGATCTGTTTTCGGGTGCAGATTTCAATGTTTG
TGAAAAATTTGTGCGGTGCGAATATCTGGAGGATGGCAATAAACCACGAG
AACAATGTGTCCAAAGGGTATTGCAGCTCAAGGACCTGTAAGAGAAGTGA
TGGAATTAAAAATGAAGTCTTTGATTGTACTTTTAAGTTTGGTAATAACA
TATGCAAAAGGTTCATGACAGTGTCGGACGAAAAAGAACCATGTTTAAAG
ATTTCGATAAATTTGAAGAACAAAAAAGAGATCTTTATGAAGATGCGAGA
AGAGACAGAAGAATGGAAACCAGACGGCCACAACATGACGACTTCAATGA
ATTTTATGATTTCGAATTTGACAAATATTAATGTTCGTATACGGCGATGG
GATGTGAGAAACAATATCCCGTTTCGATGTGGTGGTTTAGACCACTACGA
ATTGCTTGTGGACAGACCGCCTACGATTGCTTGAACAGGTGTAGACTGTG
TGGTGGCTTGGGAAGCAAATGCAAGACAGATCTGTTTTCGGGTGCAGATT
TCAATGTTTGTGAAAAATTTGTGCGGTGCGAATATCTGGAGGATGGCAAT
AAACCACGAGAACAATGTGTCCAAAGGGTATTGCAGCTCAAGGACCTGTA
AGAGAAGTGATGGAATTAAAAATGAAGTCTTTGATTGTACTTTTAAGTTT
GGTAATAACATATGCAAAAGGTTCATGACAGTGTCGGACGAAAAAGAACC
ATGTTTAAAGATTTCGATAAATTTGAAGAACAAAAAAGAGATCTTTATGA
AGATGCGAGAAGAGACAGAAGAATGGAAACCAGACGGCCACAACATGACG
ACTTCAATGAATTTTATGATTTCGAATTTGACAAATATTAATGTTCGTAT
ACGGCGATGGGATGTGAGAAACAATATCCCGTTTCGATGTGGTGGTTTAG
ACCACTACGAATTGCTTGTGGACAGACCGCCTACGATTGCTTGAACAGGT
GTAGACTGTGTGGTGGCTTGGGAAGCAAATGCAAGACAGATCTGTTTTCG
GGTGCAGATTTCAATGTTTGTGAAAAATTTGTGCGGTGCGAATATCTGGA
GGATGGCAATAAACCACGAGAACAATGTGTCCAAAGGGTATTGCAGCTCA
AGGACCTGTAAGAGAAGTGATGGAATTAAAAATGAAGTCTTTGATTGTAC
TTTTAAGTTTGGTAATAACATATGCAAAAGGTTCATGACAGTGTCGGACG
AAAAAGAACCATGTTTAAAGATTTCGATAAATTTGAAGAACAAAAAAGAG
ATCTTTATGAAGATGCGAGAAGAGACAGAAGAATGGAAACCAGACGGCCA
CAACATGACGACTTCAATGAATTTTATGATTTCGAATTTGACAAATATTA
ATGTTCGTATACGGCGATGGGATGTGAGAAACAATATCCCGTTTCGATGT
GGTGGTTTAGACCACTACGAATTGCTTGTGGACAGACCGCCTACGATTGC
TTGAACAGGTGTAGACTGTGTGGTGGCTTGGGAAGCAAATGCAAGACAGA
TCTGTTTTCGGGTGCAGATTTCAATGTTTGTGAAAAATTTGTGCGGTGCG
AATATCTGGAGGATGGCAATAAACCACGAGAACAATGTGTCCAAAGGGTA
TTGCAGCTCAAGGACCTGTAAGAGAAGTGATGGAATTAAAAATGAAGTCT
TTGATTGTACTTTTAAGTTTGGTAATAACATATGCAAAAGGTTCATGACA
GTGTCGGACGAAAAAGAACCATGTTTAAAGATTTCGATAAATTTGAAGAA
CAAAAAAGAGATCTTTATGAAGATGCGAGAAGAGACAGAAGAATGGAAAC
CAGACGGCCACAACATGACGACTTCAATGAATTTTATGATTTCGAATTTG
ACAAATATTAATGTTCGTATACGGCGATGGGATGTGAGAAACAATATCCC
GTTTCGATGTGGTGGTTTAGACCACTACGAATTGCTTGTGGACAGACCGC
CTACGATTGCTTGAACAGGTGTAGACTGTGTGGTGGCTTGGGAAGCAAAT
GCAAGACAGATCTGTTTTCGGGTGCAGATTTCAATGTTTGTGAAAAATTT
GTGCGGTGCGAATATCTGGAGGATGGCAATAAACCACGAGAACAATGTGT
CCAAAGGGTATTGCAGCTCAAGGACCTGTAAGAGAAGTGATGGAATTAAA
AATGAAGTCTTTGATTGTACTTTTAAGTTTGGTAATAACATATGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013510XLOC_013510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024053-exon-sc0000471-1575043694:169831..169905TCONS_00024053-exon-sc0000471-1575043694:169831..169905Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1575043694:168974..168993TCONS_00024053-exon-sc0000471-1575043694:168974..168993Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1575043694:167164..167292TCONS_00024053-exon-sc0000471-1575043694:167164..167292Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1575043694:166492..166608TCONS_00024053-exon-sc0000471-1575043694:166492..166608Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1575043694:164837..165353TCONS_00024053-exon-sc0000471-1575043694:164837..165353Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1510915933:169831..169905TCONS_00024053-exon-sc0000471-1510915933:169831..169905Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1510915933:168974..168993TCONS_00024053-exon-sc0000471-1510915933:168974..168993Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1510915933:167164..167292TCONS_00024053-exon-sc0000471-1510915933:167164..167292Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1510915933:166492..166608TCONS_00024053-exon-sc0000471-1510915933:166492..166608Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1510915933:164837..165353TCONS_00024053-exon-sc0000471-1510915933:164837..165353Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1491911889:169831..169905TCONS_00024053-exon-sc0000471-1491911889:169831..169905Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1491911889:168974..168993TCONS_00024053-exon-sc0000471-1491911889:168974..168993Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1491911889:167164..167292TCONS_00024053-exon-sc0000471-1491911889:167164..167292Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1491911889:166492..166608TCONS_00024053-exon-sc0000471-1491911889:166492..166608Clytia hemisphaericaexon
TCONS_00024053-exon-sc0000471-1491911889:164837..165353TCONS_00024053-exon-sc0000471-1491911889:164837..165353Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024053-proteinTCONS_00024053-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000471supercontigsc0000471:164837..169905 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218661	0.0911814	0	0.363268	0	0.0582538	0	0	0.875242	0.0570593	0.221533	1.50087	12.1418	15.5966	0.190051	0	0	0.723646	27.9781	33.6537	0	0	0	0	0	0.251291	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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