TCONS_00024077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024077
Unique NameTCONS_00024077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1100

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024077 ID=TCONS_00024077|Name=TCONS_00024077|organism=Clytia hemisphaerica|type=transcript|length=1100bp
aaaaaaatgaattccaGTTTTCACCGGCAACTGGTTTACGTTACAAAACG
CGTTCTTGCTCCACCACAACTTCAATTATCATGTCGTGCTTGCTCAACCA
ATTTGGTGCAGGCGTCACTTGAAGACAAACAGATGGAACGGTTTATCCCT
ATGACGCGACGTACGTTGTTACGCAAACTGACGGAAAACACGCATTTAGT
GGCGCCCGATGAAAGAGAGCAGTATATAGAATTCGTGAAAGGTTTAGAAA
GTTCCATATCTCATCAGTTCCACGGATCACTAAAAGAGCTAAAGcaATTA
TACGACCCGTTGAACCCTGACAAGGAAACCTTAGTCGGCCTTCACATCAA
CAAGAAGGAGAAACAGGAGCAAGAATTCTGGCTACTTCAAAAACTTTCAT
TGCTACTTGAGAAGGcacattttcaagaaattcCGCGAAATGACGTTGCA
AAGGCGTTAGAAGACCACCCTTGCTATGAGGGCGTCATGGTCAAAGTTGa
catgaaaaaatttgacgtcatcAAGTTTTGGGCGTTAGGTGAAGAAGAGG
TTCCATTGCATTATGATAATTTTCGTGAACGAATCCGCAATCAAATGTAT
GTTTACATGAAGCAGTGGCCCAAAAACATGTCCACGTATAAACGGGTGGT
CGTTGCTGTCCGCtcgaaaaaacaaaacaaacttttcttGAAAGCTTTCA
AAGATATTCCAACGAATGGACTAGAATACATCTTACCTGAAGGCAAGATC
TCTATTTCCAAGTTTGATGCAGGATTGATGGCAACTGGTGTCACAATCGG
AGCGCTCAGCGTGGGCGCGCGATTACTATCGTCCGCTGCAGATATGAATT
TGTCATGGACCTCCATCGTTGGCGGAATGACCGCCCTTTTGGCGTTGCAA
TCATGGAGTGCTTACAAAAATAAACGAAACAAATATTTAGTGGAACTCGC
AAAGACATTTTATTACAAAGCATTAGCGAACAATCGTGCTTTGTTGACTT
TGGTGACTGATAGAGCTGAAGATGAAGTTTTCAAGGCTTCCTTGCTTGCG
TACACCTTCATCCTCAAAGAAAATATCCTCAGAGAAACGAAAAACTCTAC
Run BLAST on NCBI

transcript from alignment at sc0000474:12790..14703-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024077 ID=TCONS_00024077|Name=TCONS_00024077|organism=Clytia hemisphaerica|type=transcript|length=1914bp|location=Sequence derived from alignment at sc0000474:12790..14703- (Clytia hemisphaerica)
AAAAAAATGAATTCCAGTTTTCACCGGCAACTGGTTTACGTTACAAAACG
CGTTCTTGCTCCACCACAACTTCAATTATCATGTCGTGCTTGCTCAACCA
ATTTGGTGCAGGCGTCACTTGAAGACAAACAGATGGAACGGTTTATCCCT
ATGACGCGACGTACGTTGTTACGCAAACTGACGGAAAACACGCATTTAGT
GGCGCCCGATGAAAGAGAGCAGTATATAGAATTCGTGAAAGGTTTAGAAA
GTTCCATATCTCATCAGTTCCACGGATCACTAAAAGAGCTAAAGGTGTGT
TCCCGTCATTTCCTTCAAGTGATTTCTTTCAAGTAACTTAAATACCTCAA
CTCATATTCATAACTCATATTCTCAATCAGCAAAGGATGAAAATCGTAAG
GCAAACACTATTTAAACTCACTTTTCTCTTCTGTAATTGTACTAATTTTC
GTAAGATTTAATATTGTGTTTACACAATTTCGTCATTTCAAAACTTTTAA
AACCGGATAACTTTCACAATGAATTTTTCGGCGTAACATATACTTAAAAA
TCTGATGCTTTTGACGGAAATTGGCGTTTTCAGGGCAATTTTCAACTGAC
TTACTCTTGATTCGAAAATTTTAATTCGCTAAAATAAAATATAAAACTAG
AATATTTCGTGATTTTTTCGGCTTGCAGAAATTAATCCGATTAAATCGAA
CCTTCCATGTTCGAACGGCTAATAGAATAACAAGCTTTCTTAGCTTTTTG
AATCAGAGCCTCAGACGTATAATTTTTCTTTCTTTTCAGCAATTATACGA
CCCGTTGAACCCTGACAAGGAAACCTTAGTCGGCCTTCACATCAACAAGA
AGGAGAAACAGGAGCAAGAATTCTGGCTACTTCAAAAACTTTCATTGCTA
CTTGAGAAGGCACATTTTCAAGAAATTCCGCGAAATGACGTTGCAAAGGC
GTTAGAAGACCACCCTTGCTATGAGGGCGTCATGGTCAAAGTTGACATGA
AAAAATTTGACGTCATCAAGTTTTGGGCGTTAGGTGAAGAAGAGGTTCCA
TTGCATTATGATAATTTTCGTGAACGAATCCGCAATCAAATGTATGTTTA
CATGAAGCAGTGGCCCAAAAACATGTCCACGTATAAACGGGTGGTCGTTG
CTGTCCGCTCGAAAAAACAAAACAAACTTTTCTTGAAAGCTTTCAAAGAT
ATTCCAACGAATGGACTAGAATACATCTTACCTGAAGGCAAGATCTCTAT
TTCCAAGTTTGATGCAGGATTGATGGCAACTGGTGTCACAATCGGAGCGC
TCAGCGTGGGCGCGCGATTACTATCGTCCGCTGCAGATATGAATTTGTCA
TGGACCTCCATCGTTGGCGGAATGACCGCCCTTTTGGCGTTGCAATCATG
GAGTGCTTACAAAAATAAACGAAACAAATATTTAGTGGAACTCGCAAAGA
CATTTTATTACAAAGCATTAGCGAACAATCGTGCTTTGTTGACTTTGGTG
ACTGATAGAGCTGAAGATGAAGTTTTCAAGGCTTCCTTGCTTGCGTACAC
CTTCATCCTCAAAGAAAATATCCTCAGAGGTAATCAGTGCCCTTATAAAG
ATTTTGACCGGTGCAAACTCTTTTCTTGCTCAAAAACTTCTTGGATAATC
TAATCATACTCGTCATCTTTAGAGTATCGATTGCCTTCTATTAAAACAAC
TTTCAAGTTCAGTTTTTATTTATTCTCGCATCTCATTAGATTTGCAGTAT
TACCCTTTCCAGACGAGACATCCATAACTGAACGAGTTCTTACGAAGATT
TAGTTACTTTTTAGTCCACTCGTCCTGAAAGACTTAAAAGTTTCTTTCGC
TGCTATTAAATTCTATGGAAAAAAGTCTCACACAATCTTTTCTTTTAGAA
ACGAAAAACTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013524XLOC_013524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024077-exon-sc0000474-1575043694:14410..14703TCONS_00024077-exon-sc0000474-1575043694:14410..14703Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1575043694:13125..13914TCONS_00024077-exon-sc0000474-1575043694:13125..13914Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1575043694:12790..12805TCONS_00024077-exon-sc0000474-1575043694:12790..12805Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1510915933:14410..14703TCONS_00024077-exon-sc0000474-1510915933:14410..14703Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1510915933:13125..13914TCONS_00024077-exon-sc0000474-1510915933:13125..13914Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1510915933:12790..12805TCONS_00024077-exon-sc0000474-1510915933:12790..12805Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1491911889:14410..14703TCONS_00024077-exon-sc0000474-1491911889:14410..14703Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1491911889:13125..13914TCONS_00024077-exon-sc0000474-1491911889:13125..13914Clytia hemisphaericaexon
TCONS_00024077-exon-sc0000474-1491911889:12790..12805TCONS_00024077-exon-sc0000474-1491911889:12790..12805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:12790..14703 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.00677	2.96491	5.0017	4.3114	4.55783	3.31108	5.33079	6.08784	8.01101	13.4943	12.3417	6.38362	7.08274	7.28068	8.33634	11.107	1.08365	5.87659	3.0702	8.86717	3.22941	2.15988	3.77823	4.3886	1.68578	5.57866	2.99621	2.28962	1.41381	2.6145
Blast
[Close]
BLAST of TCONS_00024077 vs. Swiss-Prot (Human)
Match: TM143 (Transmembrane protein 143 OS=Homo sapiens GN=TMEM143 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.026e-30
Identity = 99/318 (31.13%), Postives = 170/318 (53.46%), Query Frame = 1 
Query:  136 ERFIPMTRRTLLRKLTENTHLVAPDEREQYIEFVKGLESSISHQFHGSLKELKQLYDPLNPDKETLVGLHINKKEKQEQEFWXXXXXXXXXEKAHFQEIPRNDVAKALEDHPCYEGXXXXXXXXXXXXXXXWALGEE--EVPLHYDNFRERIRNQMYVYMKQWPKNMSTYKRVVVAVRSKKQNKLFLKAFKDIPTNGLEYILPEGKISISKFDAGLM-----ATGVTIGALSVGARLLSSAADMNLSWTSIVGGMTALLALQSWSAYKNKRNKYLVELAKTFYYKALANNRALLTLVTDRAEDEVFKASLLAYTFILK 1068
            ERFIP ++  LLR L +  H  +P E+     F   ++      +H  L  L+ LYDP+NPD+ETL    +   ++   E  +L+ L  LL +A+F  +  + +A AL  H   + V V V++ ++  I FWALG+   ++PL     +  + ++   + K  P     +KRVV+A R+K+   L LK+FKD P  GLE +LPE K+        L+      +GV I  ++VG  +L+   D+ ++ + ++      + L++   +  +R+   +ELA   YY++ +NN  LL+ +  RA+DE  K +LLA++F+ +
Sbjct:   72 ERFIPFSKEQLLRLLIQEFH-SSPAEKAALEAFSAHVDFCTLFHYHQILARLQALYDPINPDRETLDQPSLTDPQRLSNEQEVLRALEPLLAQANFSPLSEDTLAYALVVHHPQDEVQVTVNLDQYVYIHFWALGQRVGQMPL-----KSSVGSRRGFFTKLPPAERRYFKRVVLAARTKR-GHLVLKSFKDTPLEGLEQLLPELKVRTPTLQRALLNLMLVVSGVAI-FVNVGMVVLT---DLKVATSLLLLLFAIFMGLRASKMFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQDEHTKEALLAHSFLAR 378
The following BLAST results are available for this feature:
BLAST of TCONS_00024077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1431.026e-3031.13Transmembrane protein 143 OS=Homo sapiens GN=TMEM1... [more]
back to top