TCONS_00024079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024079
Unique NameTCONS_00024079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024079 ID=TCONS_00024079|Name=TCONS_00024079|organism=Clytia hemisphaerica|type=transcript|length=1409bp
ctcagcaaaagtgatgatgtcacatggggaccagcaaaatggtcaaaatt
tttctcaccacaCGTTTTAAATAAACGTTTGAATAGAGGGATACTTTATC
AGATTTCCATGCCtagatcttgagatatttgaatctgaaatttttggcgt
tttggcccttttctgtaacttttgaaatctatGTTTTACAGGTTTAACTT
AAAGTTTAAGCATAAATCTAGAACAAAAAGTCGTTCAATACTCTTTCCTC
TCTATATATATATGGGTTAACCATATATTTTGGAAATAGTGTAACAAACA
TTGTGCTCTCAtcctatttattcaatcattttctgtTTTAAAGTTACAAC
AGAATACAAGAAACATGCTTCCTTCAGTCGGTGTATTTGGCACAGACCAC
CAAGCTCAGATTTTAATTGCATTGTTCAAAGCTGCTGGATTCCCTGTCAC
TGCTATTTGTGGTTCTACCTACGAGAGTGCGAAATCACTAGCTAATGATT
TGAAAGTTGCTTTCCACACCAATAAGATTCAAGAATTGTTGCTTCATAAT
GAAGTGGATATTGTTTGTGTGGCTGGTACACCACATCAATATGCTGAAGT
CTGCACTAAAGCTCTCTCCATCGGCAAACATGTTTTTAGTTCCACTCCAG
CAGGTTTAACACTAAAGGAAGCAAATGATATGCTTAACAAAGCACAATAT
TATCCTAAATTATTATCTGTCTTGAACCATCCTTTGAGATTCCTGAGTGC
TTACTCAGAAGCAAAAAACTTGATCAAGGAAGGGAGAATCGGTGAGATCT
TGATATGTGAATGTCGTATACATATCAAAAGTTTGATTGGTAGTTCCTTT
GATTGGCATTGTGACAGTACCATGGGTGGAGGGGTGTTACAAACATACGG
AAGTCACATTGTTGATATCTTATCATTCCTTCTGGAACAAAAAGCTACAC
AGGCACATGGTATCCTCGAAACATTTGTCAAACAAACCGATAAAATGCCC
AATTTCCGACAAATATCAAGTGATGATTTTTGTTCCTTTCAATTGAAATA
TCCAAGTGGGATAAGAGCTTGTGTTACATTGAACGCTCACATGCCGAACA
ACTTCGTACAAGAGGTTATGTTGGTTGGTAGTAAGGGATTCTTGAAAATT
GTGAATTGTAATTTATATGGACAAATTAGTGGAAGTGATACCGTTGAATG
TTTGTATACAGAGGAGCAAGGTGACCGTTCACTTTATAGTTCGTTTGAAG
ATATCCTTCCAGGGATGTATTTACTTGGTTGTGAACAGTTGATTGAAGGA
ATCAAACTAGCCTTCGAAAGCACTCAGTTGATGGGTATGGACCAAAGCAC
CGACAGACGAAACGCTGATATCAACTTGATTACAGCTGCAGCTAACTTTG
AAAATGGTA
Run BLAST on NCBI

transcript from alignment at sc0000474:15936..17344-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024079 ID=TCONS_00024079|Name=TCONS_00024079|organism=Clytia hemisphaerica|type=transcript|length=1409bp|location=Sequence derived from alignment at sc0000474:15936..17344- (Clytia hemisphaerica)
CTCAGCAAAAGTGATGATGTCACATGGGGACCAGCAAAATGGTCAAAATT
TTTCTCACCACACGTTTTAAATAAACGTTTGAATAGAGGGATACTTTATC
AGATTTCCATGCCTAGATCTTGAGATATTTGAATCTGAAATTTTTGGCGT
TTTGGCCCTTTTCTGTAACTTTTGAAATCTATGTTTTACAGGTTTAACTT
AAAGTTTAAGCATAAATCTAGAACAAAAAGTCGTTCAATACTCTTTCCTC
TCTATATATATATGGGTTAACCATATATTTTGGAAATAGTGTAACAAACA
TTGTGCTCTCATCCTATTTATTCAATCATTTTCTGTTTTAAAGTTACAAC
AGAATACAAGAAACATGCTTCCTTCAGTCGGTGTATTTGGCACAGACCAC
CAAGCTCAGATTTTAATTGCATTGTTCAAAGCTGCTGGATTCCCTGTCAC
TGCTATTTGTGGTTCTACCTACGAGAGTGCGAAATCACTAGCTAATGATT
TGAAAGTTGCTTTCCACACCAATAAGATTCAAGAATTGTTGCTTCATAAT
GAAGTGGATATTGTTTGTGTGGCTGGTACACCACATCAATATGCTGAAGT
CTGCACTAAAGCTCTCTCCATCGGCAAACATGTTTTTAGTTCCACTCCAG
CAGGTTTAACACTAAAGGAAGCAAATGATATGCTTAACAAAGCACAATAT
TATCCTAAATTATTATCTGTCTTGAACCATCCTTTGAGATTCCTGAGTGC
TTACTCAGAAGCAAAAAACTTGATCAAGGAAGGGAGAATCGGTGAGATCT
TGATATGTGAATGTCGTATACATATCAAAAGTTTGATTGGTAGTTCCTTT
GATTGGCATTGTGACAGTACCATGGGTGGAGGGGTGTTACAAACATACGG
AAGTCACATTGTTGATATCTTATCATTCCTTCTGGAACAAAAAGCTACAC
AGGCACATGGTATCCTCGAAACATTTGTCAAACAAACCGATAAAATGCCC
AATTTCCGACAAATATCAAGTGATGATTTTTGTTCCTTTCAATTGAAATA
TCCAAGTGGGATAAGAGCTTGTGTTACATTGAACGCTCACATGCCGAACA
ACTTCGTACAAGAGGTTATGTTGGTTGGTAGTAAGGGATTCTTGAAAATT
GTGAATTGTAATTTATATGGACAAATTAGTGGAAGTGATACCGTTGAATG
TTTGTATACAGAGGAGCAAGGTGACCGTTCACTTTATAGTTCGTTTGAAG
ATATCCTTCCAGGGATGTATTTACTTGGTTGTGAACAGTTGATTGAAGGA
ATCAAACTAGCCTTCGAAAGCACTCAGTTGATGGGTATGGACCAAAGCAC
CGACAGACGAAACGCTGATATCAACTTGATTACAGCTGCAGCTAACTTTG
AAAATGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013525XLOC_013525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024079-exon-sc0000474-1575043694:15936..17344TCONS_00024079-exon-sc0000474-1575043694:15936..17344Clytia hemisphaericaexon
TCONS_00024079-exon-sc0000474-1510915933:15936..17344TCONS_00024079-exon-sc0000474-1510915933:15936..17344Clytia hemisphaericaexon
TCONS_00024079-exon-sc0000474-1491911889:15936..17344TCONS_00024079-exon-sc0000474-1491911889:15936..17344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:15936..17344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.5294	40.4259	25.3933	23.4097	6.67269	5.3682	8.00792	10.6412	3.67986	4.86126	8.20797	6.27781	5.83726	6.16116	6.95907	7.44975	5.02014	3.07612	4.9238	4.82557	4.56095	5.75174	8.74111	10.1656	10.8137	10.4004	4.58939	2.38024	3.63312	0
Blast
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BLAST of TCONS_00024079 vs. Swiss-Prot (Human)
Match: GFOD1 (Glucose-fructose oxidoreductase domain-containing protein 1 OS=Homo sapiens GN=GFOD1 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.192e-89
Identity = 151/350 (43.14%), Postives = 216/350 (61.71%), Query Frame = 2 
Query:  365 MLPSVGVFGTDHQAQILIALFKAAGFPVTAICGSTYESAKSLANDLKVAFHTNKIQELLLHNEVDIVCVAGTPHQYAEVCTKALSIGKHVFSSTPAGLTLKEANDMLNKAQYYPKLLSVLNHPLRFLSAYSEAKNLIKEGRIGEILICECRIHIKSLIGSSFDWHCDSTMGGGVLQTYGSHIVDILSFLLEQKATQAHGILETFVKQTDKMPNFRQISSDDFCSFQLKYPSGIRACVTLNAHMPNNFVQEVMLVGSKGFLKIVNCNLYGQISGSDTVECLYTEEQG-DRSLY--SSFEDILPGMYLLGCEQLIEGIKLAFESTQLMGMDQSTDRRNADINLITAAANFEN 1405
            MLP VGVFGT   A+++I L K  GF V A+ G T E A+ LA ++ V F+T++I E+LLH +VD+VC+   P    ++  K L IGK+V     A  T  +A  M + A YYPKL+S++ + LRFL A+   K LI+EG +GE L+CE ++H  SL+G  ++W CD  MGGG L + G++I+D+L+FL  QKA + HG+L+TFVKQTD +   RQI+SDDFC+FQ+    G+   VTLN ++P  F Q+V +VGS G L  V  +LYGQ + +   E L  +      SL    +F DI P  YL G  ++++ ++ AF+       DQ  DRR  D   +T AA F++
Sbjct:    1 MLPGVGVFGTSLTARVIIPLLKDEGFAVKALWGRTQEEAEELAKEMSVPFYTSRIDEVLLHQDVDLVCINLPPPLTRQIAVKTLGIGKNVICDRTA--TPLDAFRMTSAAHYYPKLMSIMGNVLRFLPAFVRMKQLIEEGYVGEPLVCEVQVHGGSLLGKKYNWSCDDLMGGGGLHSVGTYIIDLLTFLTGQKAVKVHGLLKTFVKQTDHIKGIRQITSDDFCTFQMVLEGGVCCTVTLNFNVPGEFKQDVTVVGSAGRLLAVGTDLYGQRNSAPEQELLVQDATPVSNSLLPEKAFSDI-PSPYLRGTIKMMQAVRQAFQ-------DQD-DRRTWDGRPLTMAATFDD 339
The following BLAST results are available for this feature:
BLAST of TCONS_00024079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFOD12.192e-8943.14Glucose-fructose oxidoreductase domain-containing ... [more]
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