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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024086 ID=TCONS_00024086|Name=TCONS_00024086|organism=Clytia hemisphaerica|type=transcript|length=3362bpRun BLAST on NCBI protein sequence of TCONS_00024086-protein >TCONS_00024086-protein ID=TCONS_00024086-protein|Name=TCONS_00024086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp MQLPHTCATRQLSKLKRFLTTLQQFGSDISPEIGERVRGLIVNLINSGISRun BLAST on NCBI transcript from alignment at sc0000474:85431..104506- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024086 ID=TCONS_00024086|Name=TCONS_00024086|organism=Clytia hemisphaerica|type=transcript|length=19076bp|location=Sequence derived from alignment at sc0000474:85431..104506- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000474:85431..104506- >TCONS_00024086 ID=TCONS_00024086|Name=TCONS_00024086|organism=Clytia hemisphaerica|type=CDS|length=8118bp|location=Sequence derived from alignment at sc0000474:85431..104506- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024086 vs. Swiss-Prot (Human)
Match: MTG16 (Protein CBFA2T3 OS=Homo sapiens GN=CBFA2T3 PE=1 SV=2) HSP 1 Score: 272.322 bits (695), Expect = 3.177e-78 Identity = 172/442 (38.91%), Postives = 241/442 (54.52%), Query Frame = 3
Query: 1524 TNIFSGMQLPHTCATRQLSKLKRFLTTLQQFGSDISPEIGERVRGLIVNLINSGISVEEFHQQLQDATNFPLRPFVIPFLKTNLPLLQQELLSCTHLSKRSPPPHSYTGSPPXXXXXXXXXXXXXXXVLFERVGEKRKMDHESRSKENG-----------------------------------------------HHL-DSFGLPSPNKKKHFTSPGYERNEERNPMVDQLLENYKQDTEDWRNIETILQCIVTFVDNAKRSVAAIQERCIRDREEMASWARAITADAENEIKRRA---------------------NELVTKALKQTDDRVNEVKKRAEDAVSDVKRQXXXXXXXXXXXXXXXXXXXLSLANQRMDQAVQEARRKATEETSSIINLQDASKENCWNCGRKANETCSGCNHARYCGSFCQHKDWDTHQKDC 2642
T S LP C RQLSKLKRFLTTLQQFGSDISPEIGERVR L++ L+NS +++EEFH +LQ+ATNFPLRPFVIPFLK NLPLLQ+ELL C L+K++ P Y + + L V E K R+KENG HH D++ P P + + P + ++D L ++ E+W+++ +L CI+ V+ +RS+ ++ DREE+ WAR + DAE+ K A E + + L T ++ ++AE+AV++VKRQA+ EL+KAV+ AE KA++ ++ +M++A+ EA+R+A+E+ ++IN Q+ S E+CWNCGRKA+ETCSGCN ARYCGSFCQH+DW+ H C
Sbjct: 157 TASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQT--PAQYLAQHEQLLLDASASSPIDSSELLLEVNENGKRRTPDRTKENGSDRDPLHPEHLSKRPCTLNPAQRYSPSNGPPQPTPPPHYRLEDIAMAHHFRDAYRHPDPRELRERHRPLVVPGSRQEEVIDHKL-TEREWAEEWKHLNNLLNCIMDMVEKTRRSLTVLRRCQEADREELNHWARRYS-DAEDTKKGPAPAAARPRSSSAGPEGPQLDVPREFLPRTL--TGYVPEDIWRKAEEAVNEVKRQAMSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSESCWNCGRKASETCSGCNAARYCGSFCQHRDWEKHHHVC 592 The following BLAST results are available for this feature:
BLAST of TCONS_00024086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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