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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024101 ID=TCONS_00024101|Name=TCONS_00024101|organism=Clytia hemisphaerica|type=transcript|length=1805bp
aaaatagtttgttgaaattgtttttttttcaaattgttttctaaaaataa
atctACTTCCAATCTTATAAGATATAAATAGACGAAAATTCTTTCCTACT
CTGGTCCTGTTCCGGTAAGAGTTCAAAAATATAGAAAGAGTATAATTAAG
TTCGAATGCAGCATTtccgtgatcaaaaactgaatGTTTTTACTGAATAT
GGTTTTTTAATGAATATGGTAATTTCAAAAATCATGCCAATCCTAGATGG
TAATTTTTGAGTGATAAACACGAAACTCCGTTATAGTGTGGTACAGAact
tattaaaagaaaattccGCAGCTCTTACACTTTTCTTGGCAGATAAAAAG
CTCATAAAAGCGACTTTGTGAAAGACCAGACCCCAAGTTTTGAGTTAAAG
TAAAGAACTTTCTTAATTACACTGTACACAGTTGCGCATATACACTATTC
CTTTTGTTTGGTTTGAAATTCTAATCTGAAAAAATAACACCAAAAGCGCG
AAAAGTTTTAGAgcctaattcgaacttctattattcgaatctttctgtaa
ttcaaactaaAACATTGGTCTTGGTTAGAAAGTAGTGTAATATGAACACT
GggattcgaatctttctttaattcgaagaaaagtcTTGGTCcgttgaaga
tcgaattagagagaggttTAACTGtaattgaaatttgttttatagatttt
atttattctcCGCTGAAAAAAAGTGGAAAACGCGAGCTCTTTGAAACTCT
AAGAAGCATCAGAAAAATTCTACTAAATAATTTCATCACTAAAGAATATA
CAAAAACAATttataataaacaaaaaaataatcaaaaagttAATTAAAAT
TAATCATTAAGTAATAACAATGCAACGTTTTTCCAGCAatacaaaaaacc
aaaaaactcaaACCAAAACCATTTGGGAGTGGTGGGTTTTATAAACAAAG
TGATTTGATCAGGTCGTCAAAGGATGAAATGTCTTTCGGTTCCAATATAC
TGTGTTCTGTTTGAAAATAcatgaaatgaatgaaaacgGTATTCAACAAA
TTCGATTGCTGTAACGCATCCATATCGTTATAATGCGATTGATAAATATG
AACTAACACGTGAAACAAAAGTTTGAATACTTTCTTTATCACTGACAGAA
AATTCGTTGGGAAAGTCATATCATATTTGGTCGGAAAGACAGTCTCATCT
GTGACGTATTTCTGTACATGTGTTATCACTAAATCAATGTATTCAGGTGC
AGACAATCGAACTTTCTTTCCTTTATCATGCCAAATATTAGGAGCTCCAC
TCGACATATTAGAGCAAGTTTGAGAAGTACAAAATTCATGCAAAGATTCC
TGCATCAATGAAATATGATTGAAAAACGAAAGTGTATTTGTAGCAAGCCA
TTCATTTGGGTCGACACCTGTTGGTAGTTGAACTGTTTCTTTTAATTCGT
CTTTGGATATCTTACTGAGAAGTGTTTTATCATTGACATACGGTTTTTGG
ATATCGTCCACTCTACGTGGTGTGTTCCCAGCTGAAGAGGAAGGGACTTT
ATTCCTCCCTGTGATTCCAATTAACCACTCCATTATTGTCCGTTGCTTTG
AAATTAATCTATCTATGAACTTCAGTTCGATGAATAACAATTGAACATAA
TTTAATTGTTTATTGTCTTCCTGAAATTATAAAATGAACTCAACAGAATG
GACAATACGACAACTACTCTATTGCGTAAAAAAAAGACCTCAAATtgtta
atttctttattttttctgcCTTCCAGATCTTAAAAAACCATCTTTGGATA
AGTTC Run BLAST on NCBI protein sequence of TCONS_00024101-protein >TCONS_00024101-protein ID=TCONS_00024101-protein|Name=TCONS_00024101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MEWLIGITGRNKVPSSSAGNTPRRVDDIQKPYVNDKTLLSKISKDELKET
VQLPTGVDPNEWLATNTLSFFNHISLMQESLHEFCTSQTCSNMSSGAPNI
WHDKGKKVRLSAPEYIDLVITHVQKYVTDETVFPTKYDMTFPTNFLSVIK
KVFKLLFHVLVHIYQSHYNDMDALQQSNLLNTVFIHFMYFQTEHSILEPK
DISSFDDLIKSLCL Run BLAST on NCBI transcript from alignment at sc0000474:3595..5399 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024101 ID=TCONS_00024101|Name=TCONS_00024101|organism=Clytia hemisphaerica|type=transcript|length=1805bp|location=Sequence derived from alignment at sc0000474:3595..5399 (Clytia hemisphaerica)
GAACTTATCCAAAGATGGTTTTTTAAGATCTGGAAGgcagaaaaaataaa
gaaattaacaATTTGAGGTCTTTTTTTTACGCAATAGAGTAGTTGTCGTA
TTGTCCATTCTGTTGAGTTCATTTTATAATTTCAGGAAGACAATAAACAA
TTAAATTATGTTCAATTGTTATTCATCGAACTGAAGTTCATAGATAGATT
AATTTCAAAGCAACGGACAATAATGGAGTGGTTAATTGGAATCACAGGGA
GGAATAAAGTCCCTTCCTCTTCAGCTGGGAACACACCACGTAGAGTGGAC
GATATCCAAAAACCGTATGTCAATGATAAAACACTTCTCAGTAAGATATC
CAAAGACGAATTAAAAGAAACAGTTCAACTACCAACAGGTGTCGACCCAA
ATGAATGGCTTGCTACAAATACACTTTCGTTTTTCAATCATATTTCATTG
ATGCAGGAATCTTTGCATGAATTTTGTACTTCTCAAACTTGCTCTAATAT
GTCGAGTGGAGCTCCTAATATTTGGCATGATAAAGGAAAGAAAGTTCGAT
TGTCTGCACCTGAATACATTGATTTAGTGATAACACATGTACAGAAATAC
GTCACAGATGAGACTGTCTTTCCGACCAAATATGATATGACTTTCCCAAC
GAATTTTCTGTCAGTGATAAAGAAAGTATTCAAACTTTTGTTTCACGTGT
TAGTTCATATTTATCAATCGCATTATAACGATATGGATGCGTTACAGCAA
TCGAATTTGTTGAATACcgttttcattcatttcatgTATTTTCAAACAGA
ACACAGTATATTGGAACCGAAAGACATTTCATCCTTTGACGACCTGATCA
AATCACTTTGTTTATAAAACCCACCACTCCCAAATGGTTTTGGTttgagt
tttttggttttttgtatTGCTGGAAAAACGTTGCATTGTTATTACTTAAT
GATTAATTTTAATTaactttttgattatttttttgtttattataaATTGT
TTTTGTATATTCTTTAGTGATGAAATTATTTAGTAGAATTTTTCTGATGC
TTCTTAGAGTTTCAAAGAGCTCGCGTTTTCCACTTTTTTTCAGCGgagaa
taaataaaatctataaaacaaatttcaattaCAGTTAaacctctctctaa
ttcgatcttcaacgGACCAAgacttttcttcgaattaaagaaagattcga
atccCAGTGTTCATATTACACTACTTTCTAACCAAGACCAATGTTttagt
ttgaattacagaaagattcgaataatagaagttcgaattaggcTCTAAAA
CTTTTCGCGCTTTTGGTGTTATTTTTTCAGATTAGAATTTCAAACCAAAC
AAAAGGAATAGTGTATATGCGCAACTGTGTACAGTGTAATTAAGAAAGTT
CTTTACTTTAACTCAAAACTTGGGGTCTGGTCTTTCACAAAGTCGCTTTT
ATGAGCTTTTTATCTGCCAAGAAAAGTGTAAGAGCTGCggaattttcttt
taataagtTCTGTACCACACTATAACGGAGTTTCGTGTTTATCACTCAAA
AATTACCATCTAGGATTGGCATGATTTTTGAAATTACCATATTCATTAAA
AAACCATATTCAGTAAAAACattcagtttttgatcacggaAATGCTGCAT
TCGAACTTAATTATACTCTTTCTATATTTTTGAACTCTTACCGGAACAGG
ACCAGAGTAGGAAAGAATTTTCGTCTATTTATATCTTATAAGATTGGAAG
Tagatttatttttagaaaacaatttgaaaaaaaaacaatttcaacaaact
atttt Coding sequence (CDS) from alignment at sc0000474:3595..5399 >TCONS_00024101 ID=TCONS_00024101|Name=TCONS_00024101|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000474:3595..5399 (Clytia hemisphaerica)
ATGGAGTGGTTAATTGGAATCACAGGGAGGAATAAAGTCCCTTCCTCTTC
AGCTGGGAACACACCACGTAGAGTGGACGATATCCAAAAACCGTATGTCA
ATGATAAAACACTTCTCAGTAAGATATCCAAAGACGAATTAAAAGAAACA
GTTCAACTACCAACAGGTGTCGACCCAAATGAATGGCTTGCTACAAATAC
ACTTTCGTTTTTCAATCATATTTCATTGATGCAGGAATCTTTGCATGAAT
TTTGTACTTCTCAAACTTGCTCTAATATGTCGAGTGGAGCTCCTAATATT
TGGCATGATAAAGGAAAGAAAGTTCGATTGTCTGCACCTGAATACATTGA
TTTAGTGATAACACATGTACAGAAATACGTCACAGATGAGACTGTCTTTC
CGACCAAATATGATATGACTTTCCCAACGAATTTTCTGTCAGTGATAAAG
AAAGTATTCAAACTTTTGTTTCACGTGTTAGTTCATATTTATCAATCGCA
TTATAACGATATGGATGCGTTACAGCAATCGAATTTGTTGAATACcgttt
tcattcatttcatgTATTTTCAAACAGAACACAGTATATTGGAACCGAAA
GACATTTCATCCTTTGACGACCTGATCAAATCACTTTGTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024101-exon-sc0000474-1491911889:3595..5399 | TCONS_00024101-exon-sc0000474-1491911889:3595..5399 | Clytia hemisphaerica | exon |
| TCONS_00024101-exon-sc0000474-1510915933:3595..5399 | TCONS_00024101-exon-sc0000474-1510915933:3595..5399 | Clytia hemisphaerica | exon |
| TCONS_00024101-exon-sc0000474-1575043694:3595..5399 | TCONS_00024101-exon-sc0000474-1575043694:3595..5399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000474 | supercontig | sc0000474:3595..5399 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005301 | MOB_kinase_act_fam |
Blast
BLAST of TCONS_00024101 vs. Swiss-Prot (Human)
Match: MOB2 (MOB kinase activator 2 OS=Homo sapiens GN=MOB2 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.569e-53 Identity = 89/215 (41.40%), Postives = 139/215 (64.65%), Query Frame = -1
Query: 945 MEWLIGITGRNKVPSSSAGNTPRRVDDIQKPYVNDKTLLSKISKDELKETVQLPTGVDPNEWLATNTLSFFNHISLMQESLHEFCTSQTCSNMS-SGAPNIWHD-KGKKVRLSAPEYIDLVITHVQKYVTDETVFPTKYDMTFPTNFLSVIKKVFKLLFHVLVHIYQSHYNDMDALQQSNLLNTVFIHFMYFQTEHSILEPKDISSFDDLIKSLC 1583
M+WL+G S + N + + +K Y+ + ++I+ + KE V LP +D NEWLA+NT +FF+HI+L ++ EFCT +TC M+ W+D +GKKV+ +AP+Y+D V++ VQK VTDE VFPTKY FP++F S+++K+ + LFHVL HIY +H+ + AL+ LNT+++HF+ F E ++L+PK+ + DDL + LC
Sbjct: 1 MDWLMG-------KSKAKPNGKKPAAEERKAYLEPEHTKARITDFQFKELVVLPREIDLNEWLASNTTTFFHHINLQYSTISEFCTGETCQTMAVCNTQYYWYDERGKKVKCTAPQYVDFVMSSVQKLVTDEDVFPTKYGREFPSSFESLVRKICRHLFHVLAHIYWAHFKETLALELHGHLNTLYVHFILFAREFNLLDPKETAIMDDLTEVLC 208
The following BLAST results are available for this feature:
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