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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024118 ID=TCONS_00024118|Name=TCONS_00024118|organism=Clytia hemisphaerica|type=transcript|length=2423bpRun BLAST on NCBI protein sequence of TCONS_00024118-protein >TCONS_00024118-protein ID=TCONS_00024118-protein|Name=TCONS_00024118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp MHGILKYAISSKALHHGVKNTSLLIKGNHCYLIQKLYGNQLRYYAAEAAKRun BLAST on NCBI transcript from alignment at sc0000476:136768..150923+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024118 ID=TCONS_00024118|Name=TCONS_00024118|organism=Clytia hemisphaerica|type=transcript|length=14156bp|location=Sequence derived from alignment at sc0000476:136768..150923+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000476:136768..150923+ >TCONS_00024118 ID=TCONS_00024118|Name=TCONS_00024118|organism=Clytia hemisphaerica|type=CDS|length=14685bp|location=Sequence derived from alignment at sc0000476:136768..150923+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024118 vs. Swiss-Prot (Human)
Match: EFTU (Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2) HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0 Identity = 268/395 (67.85%), Postives = 331/395 (83.80%), Query Frame = 1
Query: 745 AEAAKKTFSRDKPHVNIGTIGHVDHGKTTLTAAITKVLSEAGGAKFKGYADIDNAPEERARGITINAAHVEYETDTRHYGHIDCPGHADYIKNMITGAAQMDGAILVVAATDGQMPQTREHLLLANQVGVKHLCVFINKADMVDDAELMELVEMEIRELLTEYGFDGDETPIICGSALCALEDKLPEVGLERIRELIEAVDGHIPLPERDLDKPFLMPVEDSFSIPGRGTVITGSIERGVIKKGDEVELLGQGKNTIKTIATGLEMFHKSLDQGEAGDNLGCLVRGVKREEVKRGMVLSAPGTTKAIKKCRAQVYILKKEEGGRHKPFVSNYTPQMYVRTGDVASTITLDDGKEFVMPGEDANFNLTLMHPMPLEKGLRFTMREGSKTVGTGVIT 1929
A AKKT+ RDKPHVN+GTIGHVDHGKTTLTAAITK+L+E GGAKFK Y +IDNAPEERARGITINAAHVEY T RHY H DCPGHADY+KNMITG A +DG ILVVAA DG MPQTREHLLLA Q+GV+H+ V++NKAD V D+E++ELVE+EIRELLTE+G+ G+ETP+I GSALCALE + PE+GL+ +++L++AVD +IP+P RDL+KPFL+PVE +S+PGRGTV+TG++ERG++KKGDE ELLG KN I+T+ TG+EMFHKSL++ EAGDNLG LVRG+KRE+++RG+V+ PG+ K +K AQVYIL KEEGGRHKPFVS++ P M+ T D+A I L KE MPGED FNL L PM LEKG RFT+R+G++T+GTG++T
Sbjct: 44 AVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGRDPELGLKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKGDECELLGHSKN-IRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIKPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPEKELAMPGEDLKFNLILRQPMILEKGQRFTLRDGNRTIGTGLVT 437 The following BLAST results are available for this feature:
BLAST of TCONS_00024118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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