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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024173 ID=TCONS_00024173|Name=TCONS_00024173|organism=Clytia hemisphaerica|type=transcript|length=1197bp
TGAAAGTTCAAAGCGAAATGAGCCCatatctaaaaatacaaaaagaacgT
TACCGACTTTTTGATCGATTTTCAAATGACGTAACAATCCATGGATTTCG
TTATATGTTCGACCAACAACACTGGAGCAGACGGTTTTTATGGTTTCTTT
TGAATACGCTCATCTTTGCACTATCTTTCTTGTTATTTTATCAAATCATC
GTCGACTTTGTTCAATACAAGACGACCACCACACTCACAACCCTGCACGA
CGACATGGGAGAAATTCAATTCCCTACTATTACTGTATGCCCCTTCAATT
CTGCTTCTcaaactaaactacaaaatatttttcgttcaTTAAACATGACT
TTTGATCCAGCTTCTCACAAGTCCATTGAGGATCCACTTATAAAGCAAGC
GTTGGCGAAATTCGTGACTCTAAAAGCTGCCAACATTACGAATCTTTACA
GTGTCGCCGCTCTGTATCAACTAAACTACACCGATATGACATCAGGAGAT
ATTCCTAAACAGTTTATGCAAACTCCCTGTCTGTTTTACGGTAAAGGATG
CACGACGGAAGATTTCAAGACGGTATACACATGGTTTGGGAGTTCAATGT
GTTTTCAATTCAACTCGTTCCGAAAGCATACAACTTCACGTAAACCGGCT
ACCTTATCACCAATCGAAGGCTTCACTCTTCTTCTCGATCTCAAGCTATA
TGATGATTTCAGCTTCGGTTTCCCTGCCCAGGGTATAAGTATCACTATCA
GCTCTTATGGTCACCCGTATAAAGTTTTTGATGGAACGACTTCATTTGTT
AGTAGACCTGGTGATTTGGCTTATGTCAAACTATCGTTGAAAAAGgCAAT
CAGGATACCACAGCCCTTTCCAAACGGTTGTGGGGTAGAGGAGTATCAGA
TCATCCGAAGAGAATATCCATACACACAAGCCATGTGTTGGATGGATtgt
attttacaaaaagtgTACATAAAGTGTGGCTGTGTTGGCTATGAAGTACA
AGATGAAGTCACCAACGGGAATTTCACCAAGACAAAAAGAGAGGATTGTT
GGGCAAAGTGTCCAAAACAGTGCGATGAGATTTCGTATCAAGTGTCTCTA
TCTTCCGGTAACCTTGGCAATACTGGTATTTTCAACCGACTGTCACGGTT
AAAAAGTTGGAATAAAACTACTGAACAAGCGAGAGACTATGTCAGGT Run BLAST on NCBI transcript from alignment at sc0000478:77384..79765+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024173 ID=TCONS_00024173|Name=TCONS_00024173|organism=Clytia hemisphaerica|type=transcript|length=2382bp|location=Sequence derived from alignment at sc0000478:77384..79765+ (Clytia hemisphaerica)
TGAAAGTTCAAAGCGAAATGAGCCCatatctaaaaatacaaaaagaacgT
TACCGACTTTTTGATCGATTTTCAAATGACGTAACAATCCATGGATTTCG
TTATATGTTCGACCAACAACACTGGAGCAGACGGTTTTTATGGTTTCTTT
TGAATACGCTCATCTTTGCACTATCTTTCTTGTTATTTTATCAAATCATC
GTCGACTTTGTTCAATACAAGACGACCACCACACTCACAACCCTGCACGA
CGACATGGGAGAAATTCAATTCCCTACTATTACTGTATGCCCCTTCAATT
CTGCTTCTcaaactaaactacaaaatatttttcgttcaTTAAACATGACT
TTTGATCCAGCTTCTCACAAGTCCATTGAGGATCCACTTATAAAGCAAGC
GTTGGCGAAATTCGTGACTCTAAAAGCTGCCAACATTACGAATCTTTACA
GTGTCGCCGCTCTGTATCAACTAAACTACACCGATATGACATCAGGAGAT
ATTCCTAAACAGTTTATGCAAACTCCCTGTCTGTTTTACGGTAAAGGATG
CACGACGGAAGATTTCAAGACGGTATACACATGGTTTGGGAGTTCAATGT
GTTTTCAATTCAACTCGTTCCGAAAGCATACAACTTCACGTAAACCGGCT
ACCTTATCACCAATCGAAGGCTTCACTCTTCTTCTCGATCTCAAGCTATA
TGATGATTTCAGCTTCGGTTTCCCTGCCCAGGGTATAAGTATCACTATCA
GCTCTTATGGTCACCCGTATAAAGTTTTTGATGGAACGACTTCATTTGTT
AGTAGACCTGGTGATTTGGCTTATGTCAAACTATCGTTGAAAAAGGTAAT
CCCGCGTTTCTTATAATGAACACAGTCCAAGACATTCTCACCTGATAAAC
TCTCATCTTCTCAAATGCCATATCTTTATCTTAGTCTAAAGGAAACCTCT
GATAGTTTCAACCCGAAAGCTGGAGTCAAATCTCCTATGAAGGATTTAAA
GACATTTTCTACTTAGTTGCACGAACCACCTGGTTTTCATACAAATGCTG
GATTGGAAGTAACATTTATCgccagaatttgaaaaaatgtaacGTAAGAC
GTGAAAACAGAGAaagcgctagattcaatccgtctgTCGTCCAATTTGTG
GTccaaattttaaggcttaactTTTTCATGCTTGGTAAATGTTGGGGACT
GTTGGGGATTCCTTTCTAGCTTGCGGCTTGAAATTCAATGGTTCTGATAT
TCCATAATCTCTAAGACTTAGTCaacaaaaaaagttatattatttcttta
aaaaaatattttttttgtaggCAATCAGGATACCACAGCCCTTTCCAAAC
GGTTGTGGGGTAGAGGAGTATCAGATCATCCGAAGAGAATATCCATACAC
ACAAGCCATGTGTTGGATGGATtgtattttacaaaaagtgTACATAAAGT
GTGGCTGTGTTGGCTATGAAGTACAAGATGAAGTCACCAACGGTTGGTtt
tcttgctttgacttttttaTCTCTAATATTAAAGTCGATGATTAGGCAGA
CATTGAAAATCGTTACCTATGTACTAGTAGACAATCCTTGAATGTCATAT
CTATGTTGCTTTCTTAAAATTGTCTAACTAAATTATGCCCTCTCCCGATG
GTAGTAAAATGAGATCCCAAGCTGTTCTCacaccttttttattttatgaa
actCGCTAAAGTCTTTGCACCAAGAATATATTACTAAATCTTGTCGATCG
TTTATTTTTAAAGGCACGGAGATTTGTGGcttgaaggaaaatgaatgtta
tttaaagACCAGAAGTAAGTTCATTAAGGGGGTTCATGGTTGGAGGAGAA
GCAGAATcgcggcccttttttcggacgagtggcaaatttgcgaaaactta
gacggaattacggaaattgggttctccgACGCCGacattagacaatttta
gtgcggaaaaacggaatttagctaAAAGTTTTGTGGAATTTCGGAAGtgg
caaaaaatattaaaaaatcgtggaattttgaatttcaaaagaatttttgg
tGACGGAATTTCGGTTCATTTTTAGACGGTTAGACGGAAATtagcggaat
tgcggaatcgggtaaaACTGAAAAACTGAACTGAACTTGTATAAACACTT
TGTACAAGAAGTTTCTCTTTTCATTCACAAATGTCTCCATTTCCTCTCAC
AGGGAATTTCACCAAGACAAAAAGAGAGGATTGTTGGGCAAAGTGTCCAA
AACAGTGCGATGAGATTTCGTATCAAGTGTCTCTATCTTCCGGTAACCTT
GGCAATACTGGTATTTTCAACCGACTGTCACGGTTAAAAAGTTGGAATAA
AACTACTGAACAAGCGAGAGACTATGTCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024173-exon-sc0000478-1491911889:77384..78228 | TCONS_00024173-exon-sc0000478-1491911889:77384..78228 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1510915933:77384..78228 | TCONS_00024173-exon-sc0000478-1510915933:77384..78228 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1575043694:77384..78228 | TCONS_00024173-exon-sc0000478-1575043694:77384..78228 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1491911889:78704..78875 | TCONS_00024173-exon-sc0000478-1491911889:78704..78875 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1510915933:78704..78875 | TCONS_00024173-exon-sc0000478-1510915933:78704..78875 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1575043694:78704..78875 | TCONS_00024173-exon-sc0000478-1575043694:78704..78875 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1491911889:79586..79765 | TCONS_00024173-exon-sc0000478-1491911889:79586..79765 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1510915933:79586..79765 | TCONS_00024173-exon-sc0000478-1510915933:79586..79765 | Clytia hemisphaerica | exon |
| TCONS_00024173-exon-sc0000478-1575043694:79586..79765 | TCONS_00024173-exon-sc0000478-1575043694:79586..79765 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000478 | supercontig | sc0000478:77384..79765 + |
Blast
The following BLAST results are available for this feature:
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