|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024180 ID=TCONS_00024180|Name=TCONS_00024180|organism=Clytia hemisphaerica|type=transcript|length=2091bp
tttcatcaaaatttcggGACTTAGAACTTTACCTTGGAAACGGGAAAAAG
GCCCCTATGACGTCACGTGGTTGGCACTGCTTCGAATTTTAATCTAAATA
TCTTCGAATACTCCTATAAATAAAATGACTGACTCTTAACAAAATCCTTT
CGTTAAATTACTAGATAAATTAACAAATATGAAACATATACAATGGCTGG
CGCCAGTACAAGTATCCATTTAcatcaaaaacaactttttcgTGTCATTT
CGACAGGACAATACACTCTACACCAACTAGTAAATTATTTCGCTTTAACT
GTTGAACCAAATCCGGCTAATGATGGAGGCATAGCTTTGAGCAAAATTTT
TACTAAGAGAAAAGACAAGgtgaaaaatttctcaaacatTTCCAATGGGG
CTATCAAAGTGATATATATCGGTGACCGCGCAAACGGTATTTTCCAgcca
aaaatcaacattttagTGTTGGACACCAATCTCCTAGTTCAGATTCTCAG
AGGTATCGAAGATTTTCCAACATCCAACACTTATTTTCGTGCTGGTATTT
CTTGTAAAAACACTTCCAGCCATTTGAACAAATGTTGTCAAGGATGTAAC
CATGAGTGTATTTATTGTGGTAAAGACGAATGCAAGAAACAATGCCGCTG
TAGTCAAGAGAAAAGAAATTGTGGAAATCACCCatgcaaaatttgtaaat
cAACGAGATTCGACTGCAAGAGCAACAAATTCATCTGCTGTCAAAAATGT
AAAACTTGCCTACACTGTCTTTTGGCACGTTATAGATTGACTCATTGGCA
CCAACTTTTCAAACATTTAGTCGATGGGAGAATTACTGGTATTTGCGAAT
TTCGAGAATTGAGGTTTTCCATGTCTATTGTGGCTACCTTTCGGAACATA
ACCATGCACCTTACGTCGGCTGAATGCGATCAAATGGACACTGGAACCTT
TCAAGATCCAAATGTGCCATGGAAATCGTGGCTAGACATTCGAGATATTA
TTTGGTATGCAGTGAAATTCATGATAAACTTTTTAGCAAAACCTCTTCCA
AACCCAACGGCAAGTGCTCCACCGTACCCATCGTTGAGCATTCCTCCGAA
CCCAGTTATTACAAATTATGAAAAGGAAGATCTTTTGCAACTTTTACGCT
CTGTCTACATGGCAAGCAAACATGACGATCTCCCCATGTACAACAACTTG
CAACTAGAGCAATTTTCTTCCAACGAAAAACATCTAGTCAGTTTGCGCAA
GGCAGTAGATGATTGCAGGGTTGCAGTATCTGACAAacccttaaaaattg
aaatccatTTTCGGTTTTCGAAAAAGATGaaagattttgatttgaaatgc
aaaGAAGCTGCAAATATTAACcaaatctttaaagaaacatTACAAATTCA
TTTTGCTAAAGAATTCCCACACCAACCCAATGCATTTAGATCTGCACTTG
TTCACGTCGACAATGTAACAAAACCAAGTAAAGAATCAAAAACAATCCCG
TTAAAATTTGAGATTACATCATCAGAAATACCGTTGGATCAATACCGATA
TCAAGATGATCCATTGTCTGAGGCTCTTTGGAAAGATATTGAGAAAGAGC
TCTTGGACACCAAGCTACCGATCAAAAAAGTATCGCTCAAAGGCTGGGAA
AAAGGCTCTATTATCATTCATCTTTGCTTAGTCAGAGAGGGTGACTGTTA
CTGGTCCGAGGAAGAAATATCGAATGTTGATAAACTGTTGGTATCGTTTT
CGCAAATGGTTGAAAAGATAATGCCGCGTACACGATGTAAATGTCAGCGA
CTGCAAGAGCATCATTGGATGACTGACGAAGCATCTATCGGTGTGGCTAC
ATTTTGGGTCAATACCGACGAAGAGCATAAAGAGTTATTAAAAAAGGATG
AAGATAAAGTTGTCGAAAAACTATCACTCATTTTAGATGGACAGGAAAAT
AATGATATTGTACCCATCAAACCGAAATCAATTGTGGAGGATATTTCACT
TGTTTCGGTAGATCAGGAACCAATCTGTCAACATCCCATTGATAAAAACG
TTCGAGAAAATAACACGGGTGAAAAGACAGAACCAGCAAAA Run BLAST on NCBI transcript from alignment at sc0000478:187100..190123+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024180 ID=TCONS_00024180|Name=TCONS_00024180|organism=Clytia hemisphaerica|type=transcript|length=3024bp|location=Sequence derived from alignment at sc0000478:187100..190123+ (Clytia hemisphaerica)
tttcatcaaaatttcggGACTTAGAACTTTACCTTGGAAACGGGAAAAAG
GCCCCTATGACGTCACGTGGTTGGCACTGCTTCGAATTTTAATCTAAATA
TCTTCGAATACTCCTATAAATAAAATGACTGACTCTTAACAAAATCCTTT
CGTTAAATTACTAGATAAATTAACAAATATGAAACATATACAATGGCTGG
CGCCAGTACAAGTATCCATTTAcatcaaaaacaactttttcgTGTCATTT
CGACAGGACAATACACTCTACACCAACTAGTAAATTATTTCGCTTTAACT
GTTGAACCAAATCCGGCTAATGATGGAGGCATAGCTTTGAGCAAAATTTT
TACTAAGAGAAAAGACAAGgtgaaaaatttctcaaacatTTCCAATGGGG
CTATCAAAGTGATATATATCGGTGACCGCGCAAACGGTATTTTCCAgcca
aaaatcaacattttagTGTTGGACACCAATCTCCTAGTTCAGATTCTCAG
AGGTATCGAAGATTTTCCAACATCCAACACTTATTTTCGTGCTGGTATTT
CTTGTAAAAACACTTCCAGCCATTTGAACAAATGTTGTCAAGGATGTAAC
CATGAGTGTATTTATTGTGGTAAAGACGAATGCAAGAAACAATGCCGCTG
TAGTCAAGAGAAAAGAAATTGTGGAAATCACCCatgcaaaatttgtaaat
cAACGAGATTCGACTGCAAGAGCAACAAATTCATCTGCTGTCAAAAATGT
AAAACTTGCCTACACTGTCTTTTGGCACGTTATAGATTGACTCATTGGCA
CCAACTTTTCAAACATTTAGTCGATGGGAGAATTACTGGTATTTGCGAAT
TTCGAGAATTGAGGTTTTCCATGTCTATTGTGGCTACCTTTCGGAACATA
ACCATGCACCTTACGTCGGCTGAATGCGATCAAATGGACACTGGAACCTT
TCAAGATCCAAATGTGCCATGGAAATCGTGGCTAGACATTCGAGATATTA
TTTGGTATGCAGTGAAATTCATGATAAACTTTTTAGCAAAACCTCTTCCA
AACCCAACGGCAAGTGCTCCACCGTACCCATCGTTGAGCATTCCTCCGAA
CCCAGTTATTACAAATTATGAAAAGGAAGATCTTTTGCAACTTTTACGCT
CTGTCTACATGGCAAGCAAACATGACGATCTCCCCATGTACAACAACTTG
CAACTAGAGCAATTTTCTTCCAACGAAAAACATCTAGTCAGTTTGCGCAA
GGCAGTAGATGATTGCAGGGTTGCAGTATCTGACAAacccttaaaaattg
aaatccatTTTCGGTTTTCGAAAAAGATGaaagattttgatttgaaatgc
aaaGAAGCTGCAAATATTAACcaaatctttaaagaaacatTACAAATTCA
TTTTGCTAAAGAATTCCCACACCAACCCAATGCATTTAGATCTGCACTTG
TTCACGTCGACAATGTAACAAAACCAAGTAAAGAATCAAAAACAATCCCG
TTAAAATTTGAGATTACATCATCAGAAATACCGTTGGATCAATACCGATA
TCAAGATGATCCATTGTCTGAGGCTCTTTGGAAAGATATTGAGAAAGAGC
TCTTGGACACCAAGCTACCGATCAAAAAAGTATCGCTCAAAGGCTGGGAA
AAAGGCTCTATTATCATTCATCTTTGCTTAGTCAGAGAGGGTGACTGTTA
CTGGTCCGAGGAAGAAATATCGAATGTTGATAAACTGTTGGTATCGTTTT
CGCAAATGGTTGAAAAGATAATGCCGCGTACACGATGTAAATGTCAGCGA
CTGCAAGAGCATCATTGGATGACTGACGAAGCATCTATCGGTGTGGCTAC
ATTTTGGGTCAATACCGACGAAGAGCATAAAGAGTTATTAAAAAAGGATG
AAGATAAAGTTGTCGAAAAACTATCACTCATTTTAGATGGACAGGAAAAT
AATGGTGTGTGTAAGTATTGTAATATATTCTCCTAATTTAGATTCATAAT
TTTAATGTCCCCATTGATTGCAGACTTTTAtgtaaagtaagtaagtctgc
gacggTAGTAGGAgacgacccgaaggctcctcttttgatAGATATCTACC
CGAAGATAGAAGAGGACACCACTCTTTCTCCccggattgctccacttact
tTTGATCCTCTCATTAATTGCCGAGAATCgggcagagaggcatcaagtac
cattcaggagaagtctttggtatgatctggccagggattgaacccacgac
ctaaagtaaaatcctcataatttatgCCAAGTTTTACGACTTGTTTACTT
AATACCTCAATCTCAAAAACATATTCGACGATCatgggaattgaatatct
atttaATGAACAGAGAGTtgtaatcttttttcaattattctaaGCCCAGT
TTAAATAACGAGTTTTGAGGATTTCACTTTATACAAAATTCTGTCCACTT
TTTTAGGGACATACTGTATAAACTGCTAAATCCTAAAacatttcttcaat
ttctttaaGATATTGTACCCATCAAACCGAAATCAATTGTGGAGGATATT
TCACTTGTTTCGGTAGATCAGGAACCAATCTGTCAACATCCCATTGGTAA
GTACATATAGTTATGGGCAAACCATTAAATAGCATAAGCCCCTTGACGCC
AGTCCTTAACCCGCCACAGCCAAATAGGTGCCTACGACGATAAAAGCAAT
GGGCTcttgcaaaaaaaatatatacccCCACCCTTATTTTGAGGAGTTCT
TTTTGGAGAAggtgaccccctggatattttttcaattttcaggacccact
tattttgattattaaaatttgaagatttggtACTATACTACCCATCAAGA
TCAGGAAACACTCCCACGAAGCTTATCTTTCAGTAAGCATAATCAACTTG
AATATCCAAAACGATTTccaaaatcttgtttttaaacAAATGATGGCTAA
ATATCTCTATGCTTCTTTTTCCAGATAAAAACGTTCGAGAAAATAACACG
GGTGAAAAGACAGAACCAGCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024180-exon-sc0000478-1491911889:187100..189053 | TCONS_00024180-exon-sc0000478-1491911889:187100..189053 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1510915933:187100..189053 | TCONS_00024180-exon-sc0000478-1510915933:187100..189053 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1575043694:187100..189053 | TCONS_00024180-exon-sc0000478-1575043694:187100..189053 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1491911889:189609..189695 | TCONS_00024180-exon-sc0000478-1491911889:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1510915933:189609..189695 | TCONS_00024180-exon-sc0000478-1510915933:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1575043694:189609..189695 | TCONS_00024180-exon-sc0000478-1575043694:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1491911889:190074..190123 | TCONS_00024180-exon-sc0000478-1491911889:190074..190123 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1510915933:190074..190123 | TCONS_00024180-exon-sc0000478-1510915933:190074..190123 | Clytia hemisphaerica | exon |
| TCONS_00024180-exon-sc0000478-1575043694:190074..190123 | TCONS_00024180-exon-sc0000478-1575043694:190074..190123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000478 | supercontig | sc0000478:187100..190123 + |
Blast
The following BLAST results are available for this feature:
|
