TCONS_00024205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024205
Unique NameTCONS_00024205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024205 ID=TCONS_00024205|Name=TCONS_00024205|organism=Clytia hemisphaerica|type=transcript|length=412bp
TGNATCAAGAAGACTGGTGACAACTGGAGCTTGAATGGTTTAGTCATGAA
TAAGCTCGAACATCAATTATCAAAAGATCCGAAGGTTCGATGCAGTAATT
GGGAGAATGTACCTTTATCGAAAGAACAACTTGATTACGCTGTCCTTGAT
GCTTATGCTGGATGGAAAGTTTATCACAAATTACTTGAATGACATTGACG
ATCAGGTATGTCATCATATTATTTTGAAAGTTCTGCATCGATGATAAAAA
ATATAGCTAGATAGGAAAGTATAATATGCAATGAGGGAATATTATCTTTT
GTTTTCAGAATTTAATAGATCTagtaaaataatattataatatttgattt
ttttaaaagacaagagtattaaaattttgaatgtaaTTTTGACACTCTTT
TTGGTTCACCAG
Run BLAST on NCBI

transcript from alignment at sc0000478:179127..180743-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024205 ID=TCONS_00024205|Name=TCONS_00024205|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at sc0000478:179127..180743- (Clytia hemisphaerica)
TGNATCAAGAAGACTGGTGACAACTGGAGCTTGAATGGTTTAGTCATGAA
TAAGGTATGGTCGAGTTAAATTGTTGATAATCACCCTAAGGGGACGGGTG
AAAAATACTACTACTTATTACCCGCGTCCTACTTATGCGAATATTTTCTT
TTTGCCTGAAAAGATAAAAAAGTTCAAGGGAGCGAAGAAAAATGTACCTA
TCCAGTTTCAACTATGGATTCAGGTACTGCTATGCTTGACTTAATGTATA
TGATGAGTTTGTTTGTAATCATATTCACCTAGTACTTCTGTTAATCGTTA
GTCTTCACCAATTTTAATCTTTTGTCAAGCAATAATAGCGAGTCAATGCA
CTATTGAGGCCGGTGAAGTGACTGAATCTATTTGGAATAACCCGCATATT
TGACCCGCAAAATCAAGGACGGTAAAAGTGCTTTTGTACCGTTGTCGCTA
GTCAATCAAAATCTAGACAAATCAGAAACTAACCGACCTCTTCGCTGGAA
AAAAAAACAGATACATAAACTTGATAATATTATAAGTTACGCGGGTCTTC
AAGGCGGTATATGATATGGGGTTATTGAGATTTATTGAAGAAAATGCTTG
TCGAGATAGAATTTCCTGGAATTTGCACTTAGACTTAGACGCCTTTTAAG
AAAAATGCTTCTGAACAATGCTGAATTATATTAAAAAGTACTAACTAGAG
AAATTAGTATAAAGAATAGAGTTTATGTCAGGAATCGCCCCAGTCCTTAA
TCCCTTATTTCTTCTTGCAATCAGCTCGAACATCAATTATCAAAAGATCC
GAAGGTTCGATGCAGTAATTGGGAGAATGTACCTTTATCGAAAGAACAAC
TTGATTACGCTGTCCTTGATGCTTATGTATGATGATATTTTAAGAAAATT
GTACTTTTCACTCAGTTTGGTCAACGTGGGATAGATAGCTCCCCCCTGGG
CAAACACTAGATAAGCCCTATAACTATCAACCTATTCCATTATTTATTTT
TTTGATTCAAGGAATTATACTTGAAGAACAGCCGACAAAAGCTGTTGAAG
GTTATCAGTCCATGGGGAGAGGCATGTTATCGTTCGTATAATGGCCCCTC
ACATTTTTGCAAACTTTTTTATAAGTCAAAAACCTGTTTATCAAATTAAA
AAGCGTTTTACTTTGCTTAAAGGTGCACAATTGAAACAATTGTCTTTGTC
GACCAATCGTTTTTTAAAACTTTTTGGCCTCCTCACTTCAAACGGCTCGT
CGGGGCCCGTGCGTAGTCACGACAGATTCCTAATTGTGATTAATGATTGT
ATATTGATTGTTCCATTTATCCTGGTATCTTTAAAAAAATGCAATCCAAT
TTGATTTTTAGGCTGGATGGAAAGTTTATCACAAATTACTTGAATGACAT
TGACGATCAGGTATGTCATCATATTATTTTGAAAGTTCTGCATCGATGAT
AAAAAATATAGCTAGATAGGAAAGTATAATATGCAATGAGGGAATATTAT
CTTTTGTTTTCAGAATTTAATAGATCTAGTAAAATAATATTATAATATTT
GATTTTTTTAAAAGACAAGAGTATTAAAATTTTGAATGTAATTTTGACAC
TCTTTTTGGTTCACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013580XLOC_013580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024205-exon-sc0000478-1575043694:180690..180743TCONS_00024205-exon-sc0000478-1575043694:180690..180743Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1575043694:179868..179969TCONS_00024205-exon-sc0000478-1575043694:179868..179969Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1575043694:179127..179382TCONS_00024205-exon-sc0000478-1575043694:179127..179382Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1510915933:180690..180743TCONS_00024205-exon-sc0000478-1510915933:180690..180743Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1510915933:179868..179969TCONS_00024205-exon-sc0000478-1510915933:179868..179969Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1510915933:179127..179382TCONS_00024205-exon-sc0000478-1510915933:179127..179382Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1491911889:180690..180743TCONS_00024205-exon-sc0000478-1491911889:180690..180743Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1491911889:179868..179969TCONS_00024205-exon-sc0000478-1491911889:179868..179969Clytia hemisphaericaexon
TCONS_00024205-exon-sc0000478-1491911889:179127..179382TCONS_00024205-exon-sc0000478-1491911889:179127..179382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:179127..180743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.97405	7.05181	3.79448	4.57311	0	0	0	0	2.31801	3.61769	3.81715	3.89465	1.28356	0	0.836677	1.63912	0.745133	1.42293	0.414214	0.887597	3.06033	2.98266	0.933601	0.298094	0	0	2.89411	0	0.331384	1.19902
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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