TCONS_00024220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024220
Unique NameTCONS_00024220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024220 ID=TCONS_00024220|Name=TCONS_00024220|organism=Clytia hemisphaerica|type=transcript|length=686bp
ataaaaattactatATATTATACTACatacataaaaaaaatcattaatta
taatttttaaaaccttCTGATTAGATTCTAATGTATAAAATTAAGATCAA
AACTTTGAGACAGTTGGGAGAAAGTTCTATATTTACATCTTACAGTTCTT
CCAACTACAAATCATTTAAAATGTTACACTCTACAAATGAAATGGTTCGC
ATGCTTTATTCCCACAGACACTATATGTAAGAGTAAGGGTTCGGAGGTCG
GGTACCTCACACctacggtaggtcgtttaccttgagttcCCTCCCCGGAT
TCGGTATGCACATAATAATCACCCAACAACCCTAGTAACCCCCTCCCGTA
ATGATTTGCAACCCTCACACTCTTTCTCGATATGCATAAAAGCATATAAT
AGTGGTTCTTGCGAGTGAAAGTACGTAAGCCTTATTGTCAAATTAATAAA
AACTTGGATCGATAATGTTAAACGTAATAAAATCCTGTTTGATGAGTCCT
AAGTTTATTATTTCTTTATGCGTCTCAAGGATAGTCAGGATCGAAACATA
AAAAGCAAAGCCAAAACGTAAAGTAGACACAACGAGTTATCAAAATATTC
AtcacaatttctttttctttttctttttcaaccgGCATGTGGATTGTCAA
CAACACCATTTGTTCGTAACGTTTGATGCTCGACCT
Run BLAST on NCBI

transcript from alignment at sc0000478:147693..148378

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024220 ID=TCONS_00024220|Name=TCONS_00024220|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0000478:147693..148378 (Clytia hemisphaerica)
AGGTCGAGCATCAAACGTTACGAACAAATGGTGTTGTTGACAATCCACAT
GCcggttgaaaaagaaaaagaaaaagaaattgtgaTGAATATTTTGATAA
CTCGTTGTGTCTACTTTACGTTTTGGCTTTGCTTTTTATGTTTCGATCCT
GACTATCCTTGAGACGCATAAAGAAATAATAAACTTAGGACTCATCAAAC
AGGATTTTATTACGTTTAACATTATCGATCCAAGTTTTTATTAATTTGAC
AATAAGGCTTACGTACTTTCACTCGCAAGAACCACTATTATATGCTTTTA
TGCATATCGAGAAAGAGTGTGAGGGTTGCAAATCATTACGGGAGGGGGTT
ACTAGGGTTGTTGGGTGATTATTATGTGCATACCGAATCCGGGGAGGgaa
ctcaaggtaaacgacctaccgtagGTGTGAGGTACCCGACCTCCGAACCC
TTACTCTTACATATAGTGTCTGTGGGAATAAAGCATGCGAACCATTTCAT
TTGTAGAGTGTAACATTTTAAATGATTTGTAGTTGGAAGAACTGTAAGAT
GTAAATATAGAACTTTCTCCCAACTGTCTCAAAGTTTTGATCTTAATTTT
ATACATTAGAATCTAATCAGaaggttttaaaaattataattaatgatttt
ttttatgtatGTAGTATAATATatagtaatttttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013591XLOC_013591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024220-exon-sc0000478-1491911889:147693..148378TCONS_00024220-exon-sc0000478-1491911889:147693..148378Clytia hemisphaericaexon
TCONS_00024220-exon-sc0000478-1510915933:147693..148378TCONS_00024220-exon-sc0000478-1510915933:147693..148378Clytia hemisphaericaexon
TCONS_00024220-exon-sc0000478-1575043694:147693..148378TCONS_00024220-exon-sc0000478-1575043694:147693..148378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:147693..148378 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0743768	0.0725291	0.0842132	0	0.100301	0.237778	8.31921	7.51978	3.3845	6.67654	7.68608	1.73371	5.98535	4.52061	0	0.0453231	1.45169	1.43071	13.9153	14.0649	3.59559	4.73526	1.36446	1.78321	3.27406	2.70821	0	0	0.165105	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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