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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024226 ID=TCONS_00024226|Name=TCONS_00024226|organism=Clytia hemisphaerica|type=transcript|length=873bp
TGTACAGACAAGAATATTGACAGAAGGCACCAGAAACGATTTGGACACAG
CCTTTTTATGAATTTACAATTACTAATCATATTCTATAAAATTCAAATGC
TATTTATATTTTGGTATGTAATCTGGTACAGGACCAAACTGTTGCCGATA
CTTTTCTTCAATATCTTCATAAAAACgtactttgatattttgcttCAATA
AATTTCTTGTGATTCGTCGACGTTTACGTATCTGTTCTTCCATTTCATAC
CTTTCCATAACGATTGTATTATACTGGACAACCTTCTCTTGAGATGCTCC
AGCATTGGATGGTCCTAAATTCACTTGGAGTTTTGTACCGTCTCTTTCAG
TTGCTAATTCAATAACTCGGTTCGAGGTCGCTTCCTTGTCACCGGCTTCT
TCGTCTGTGCCGtccaattttattttcttactttCTGAGGGTCTGTCTTC
TGTATCaatttttgtctgaatttcaTCTTCAATTGCTTCAAAAGGAGTTG
AGTCTTTATCACCAACGTCGTCAGGATGCGTCGATCGCTCGTTCTTTTCA
ATTTGTTTAATCAAAGCATTTGAGATGCTTATTTCTTCACGGTGCACTGT
CCATTCGTTATTCTCTTCACACGTCACCCATCCGTCGCCGTGATCAGAAT
CAACGTCATTTTCTCCGTCACCAGAATCGTCGTCGCTAATCTCTGCTTCA
ACTTCAGCCAACATTTCTGAGTAAATGGATGAAGGGTCTGACAACAAGGA
AATTTTTTCTGGGATTCCTTCTTTGATGGTGATGTTCTGTGTTGCGTGTA
GAAGTTCAGTATCTTCTCCCCGTCTCTGCTCCGTCGCTGCTGTATCTgcc
attttatcaaaattaacaAACGA Run BLAST on NCBI protein sequence of TCONS_00024226-protein >TCONS_00024226-protein ID=TCONS_00024226-protein|Name=TCONS_00024226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
SFVNFDKMADTAATEQRRGEDTELLHATQNITIKEGIPEKISLLSDPSSI
YSEMLAEVEAEISDDDSGDGENDVDSDHGDGWVTCEENNEWTVHREEISI
SNALIKQIEKNERSTHPDDVGDKDSTPFEAIEDEIQTKIDTEDRPSESKK
IKLDGTDEEAGDKEATSNRVIELATERDGTKLQVNLGPSNAGASQEKVVQ
YNTIVMERYEMEEQIRKRRRITRNLLKQNIKVRFYEDIEEKYRQQFGPVP
DYIPKYK Run BLAST on NCBI transcript from alignment at sc0000478:235156..236028 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024226 ID=TCONS_00024226|Name=TCONS_00024226|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at sc0000478:235156..236028 (Clytia hemisphaerica)
TCGTTtgttaattttgataaaatggcAGATACAGCAGCGACGGAGCAGAG
ACGGGGAGAAGATACTGAACTTCTACACGCAACACAGAACATCACCATCA
AAGAAGGAATCCCAGAAAAAATTTCCTTGTTGTCAGACCCTTCATCCATT
TACTCAGAAATGTTGGCTGAAGTTGAAGCAGAGATTAGCGACGACGATTC
TGGTGACGGAGAAAATGACGTTGATTCTGATCACGGCGACGGATGGGTGA
CGTGTGAAGAGAATAACGAATGGACAGTGCACCGTGAAGAAATAAGCATC
TCAAATGCTTTGATTAAACAAATTGAAAAGAACGAGCGATCGACGCATCC
TGACGACGTTGGTGATAAAGACTCAACTCCTTTTGAAGCAATTGAAGAtg
aaattcagacaaaaattGATACAGAAGACAGACCCTCAGaaagtaagaaa
ataaaattggaCGGCACAGACGAAGAAGCCGGTGACAAGGAAGCGACCTC
GAACCGAGTTATTGAATTAGCAACTGAAAGAGACGGTACAAAACTCCAAG
TGAATTTAGGACCATCCAATGCTGGAGCATCTCAAGAGAAGGTTGTCCAG
TATAATACAATCGTTATGGAAAGGTATGAAATGGAAGAACAGATACGTAA
ACGTCGACGAATCACAAGAAATTTATTGaagcaaaatatcaaagtacGTT
TTTATGAAGATATTGAAGAAAAGTATCGGCAACAGTTTGGTCCTGTACCA
GATTACATACCAAAATATAAATAGCATTTGAATTTTATAGAATATGATTA
GTAATTGTAAATTCATAAAAAGGCTGTGTCCAAATCGTTTCTGGTGCCTT
CTGTCAATATTCTTGTCTGTACA Coding sequence (CDS) from alignment at sc0000478:235156..236028 >TCONS_00024226 ID=TCONS_00024226|Name=TCONS_00024226|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000478:235156..236028 (Clytia hemisphaerica)
TCGTTtgttaattttgataaaatggcAGATACAGCAGCGACGGAGCAGAG
ACGGGGAGAAGATACTGAACTTCTACACGCAACACAGAACATCACCATCA
AAGAAGGAATCCCAGAAAAAATTTCCTTGTTGTCAGACCCTTCATCCATT
TACTCAGAAATGTTGGCTGAAGTTGAAGCAGAGATTAGCGACGACGATTC
TGGTGACGGAGAAAATGACGTTGATTCTGATCACGGCGACGGATGGGTGA
CGTGTGAAGAGAATAACGAATGGACAGTGCACCGTGAAGAAATAAGCATC
TCAAATGCTTTGATTAAACAAATTGAAAAGAACGAGCGATCGACGCATCC
TGACGACGTTGGTGATAAAGACTCAACTCCTTTTGAAGCAATTGAAGAtg
aaattcagacaaaaattGATACAGAAGACAGACCCTCAGaaagtaagaaa
ataaaattggaCGGCACAGACGAAGAAGCCGGTGACAAGGAAGCGACCTC
GAACCGAGTTATTGAATTAGCAACTGAAAGAGACGGTACAAAACTCCAAG
TGAATTTAGGACCATCCAATGCTGGAGCATCTCAAGAGAAGGTTGTCCAG
TATAATACAATCGTTATGGAAAGGTATGAAATGGAAGAACAGATACGTAA
ACGTCGACGAATCACAAGAAATTTATTGaagcaaaatatcaaagtacGTT
TTTATGAAGATATTGAAGAAAAGTATCGGCAACAGTTTGGTCCTGTACCA
GATTACATACCAAAATATAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024226-exon-sc0000478-1491911889:235156..236028 | TCONS_00024226-exon-sc0000478-1491911889:235156..236028 | Clytia hemisphaerica | exon |
| TCONS_00024226-exon-sc0000478-1510915933:235156..236028 | TCONS_00024226-exon-sc0000478-1510915933:235156..236028 | Clytia hemisphaerica | exon |
| TCONS_00024226-exon-sc0000478-1575043694:235156..236028 | TCONS_00024226-exon-sc0000478-1575043694:235156..236028 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000478 | supercontig | sc0000478:235156..236028 . |
Blast
The following BLAST results are available for this feature:
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