TCONS_00024240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024240
Unique NameTCONS_00024240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024240 ID=TCONS_00024240|Name=TCONS_00024240|organism=Clytia hemisphaerica|type=transcript|length=4905bp
AATACAAATGGGTGTGACACAAACAACAAATTCGGTAATCCATTTCCAGT
GGGCGATCCGAGAAATTGTCTTATGCAGCAGCCTGATTTGTTAAAAATGG
AGGTACTCCCTGGAACCGGATGGGACAATTTGAGGAACGTCGATATGGAT
GTTGTGTTGGGCGAAAGTTATTCACAATGCAAAACAAGTAAAGATGGTAT
ATATTTAATTCCCGATGAAACTTACTCTATCGCTATAAAAGAAAGTCACG
TGGAGCTGACATCTGATTATTTTGACCACTGGAATAATTACACTTCAACA
ACATCGACCACTATCAATGTTCAAGGTTTTGGCATTACCGAAGAGGGTGT
TATTAGTGGTAAGCTTTCTACTGAATTCCGATCCGTCAAGAGTAATCAAG
TCGACCACAAAGCTGTTACTACGCGTGTCCAACTACGACATAAATTTTAC
ACAGTCAAATCGAAAACGGACACTGATCTACATCCAAATTTCAAATCAAG
GCTACTGGATATCGCATCCCACATACAGttaaataatacaaaaatggCGC
GCTATTTGACTGATTTGGTGGTCCGTGATTACGGGACGCACTATATTACA
AGTATAGACGCAGGTGCGGTTCTATCCAAAATCGATCATATAAAGTCAAC
CTATGCTAGACAAGAACAAAGAGATTCTACCAACATTAGAATCGAAGCAA
GTGCACTTTTTGAACTGTGGGGAGCGAGTACATCAATTTCGCACACGTCA
AGTACGGACAATATCGACGCATATAAAAAGAGTATCACTGCCTCAAGTAT
AAAGAGCCATGGAGGACCCCCGTTCGGCGCGAACTTTACTGTCAAGGACT
GGGAAGCAGGATTAGTCAATAATCTAGCAGCAATAGATAGAGCCGGAGAT
CCTTTATATTACGCTATCGAGCAACAGGCTTTCCCAGAGTTGCCAGATGC
ACTTGTATTTGAGCTGGCAAATTATTTGAaacattcaatcaaaagttatt
acaaACATAACCTTATAAAAGGGTGCACGAACCCTGATGCAAGGGATTTC
AATGTTCAAGCCATTCTTGATGATCACTCTTGTGAGAAGCCATTCACCAA
TTTCACATTTGGAGGTGTCTTTCAATCGTGCGAAGTGACAAACATACCCC
ATAGTGAAGCTAAATGTGACGagaagaaaatacaaaagaatccGAAAACA
GATGCTTATACATGTGAAGAAGGATACCAGCCTGTGTTCTTGCACCGTCA
TGATGAGGAGTCAGGCTGCAAAAGACATTGTAAACATTTCTTGTTTTGGT
CATGGCACTGTCGTACGTATTGTGGGACTGCACACTATTCCACTTATTGG
TGTGCTGCTACAGGTCCTGTGAAGCAAGGAGAAGGCTTTCTTTTCGGTGG
TATGTACAATAAACTGATGGTGAACCCATTGACAGGCGGTAGCAGTTGTC
CACCCAAATTCTACCCACAAGTCTTTGGACCCGAAGATATGTTTGTTTGT
ATCAGTGATGATTATGAATTGGCAAGGCCGTATTCAATTCCGTTCTCTGG
CTTCTTTAGTTGTTCAATTGGTAACCCATTggctttgaataaaaacacaa
ACAATAGGGGGCCAAATGGTTGGCCGAAGAGTTGTCCTGAAAACTACGCG
CAACATTTAGCAGTTGTAGATGACACCTGCGAGATAAATTATTGCGTTAA
AGTTAACTCCCTATCCGCACTGGGCGGGCTGGCGCCTGTGAGGCAACCGC
CCTTCCGTTCAAAACCGAAAAGGAATATGAATATTACAATCCCTCTCACA
ATTATTAATGATGAAACGAAAAGTGTATGGTTCAAAAGCTTAGATAACCA
AAAATggacaaaggctaataaaagCATTATACTGGACCGCCTTGCCGAGA
TCGGGATTACAAACGTTGCCGAAGATGACATTACACATATAGCGGAAAAC
GTGATGAATAGAGGAGCTATTGATACTTTGAAAGCATCCGTAACTCGTAT
GTCGNCAGCTGAGAAAAAGGAAGCTGAAATATCCAAATCTACCGGAAGTG
GTGGTGGTGGTTCTAACCAACCAGTATCGAATGGAACAGCTGTAGGAATC
ACCATTGGTGTTCTTGCGATTGTTCTTATTATTGTTCTGGTAGCTGTTAC
CAAGTTTCAACGAAAGAAGAAACAACATAGAAGAGGTTTTAATGAGATAC
CCGCACCTGGCTCCAATGAGCCGCAAACGGACCAAGATTATCATGCCATG
TGATTTTGTGAGAAGAATACAGAAGAAAAACCGAGGAAGACTTTGGCAAA
AGAAAACATAATGACGTAGCAAGACCTAGTGTATTGTGATATAGACGTTA
AAATATTAATCTCAATTTTAATCAACTGCCCTGATTTGGGGAATTTCTTA
CCCTTAATTAGAAATCATCAGCTATCCTGGTCTACGTTTTCAACACACTA
CTGCTTGGAGGTAGATTTTTTATACTTGTACAAATTGGCCACTGATTTTT
GCTGTTCCAAGTTGGGAAGGGCTTGGCCATGTTAGGACTACTTTCGATTC
CAGTCTTTTATGGGCTGTCCCAGAAAAGAATTGTACAGGACCCctttgga
tttcttttttttttcaatctttggaccaccctggattttcaacctcattt
cattgaccacctggagttttaaaatcaaaaaaccaaACGCCCcaggattt
tttaattttcggaCCACCCTGAACGCCACACATGCTCAACAaaggggtac
agactatttctggaatagcccaataaatTTAGACAACAGAATACATAATT
GGCGtagattttttggattttacgaATTAACAAAAAGACGGACTTTATCA
AAGTTAGcagaaatcattttctagcaTTATAATTTGCAAATATTTCAACA
GTCAAGACGAAAATTTCTCTCTTCAAGCACTCGAGAAAGATTGCAAAAAG
AAATTGTGCAAAAGACTTCGTAAAAACACATGTCAAGACCAGTAGAAAAT
AATTTCTTCTAAAAAGGTGTAGTTccaaatttagaaaaacaagAACTTCA
AACTGAGCTTAACTAGCCTCTTTATTCagaaaaaattctcaaataatTGA
CTTTGTCAATCGTGGTTGGGGaacataaaaaagttttgaatcttAGGAGC
TAAAAGTGTTAACTTCGGGCTCTTCCGGAAAATGTTCGCACATGGGGGTG
GGTGGGATATGATGTCCGGGGGGTAGTAAAAAATCTACTAAATTTGCCTT
GTcccgggggtaaacttgctctgtttgtttttctaaaatgtcCAGGGaat
caactgatgcttgtccggggggttaaACCTGctgtccaggggggggggga
aatttccaaaaatgttataCTCTCCACCTCCCATAatcaattttttctgg
aaaagcccctTCTTCGAGtcgatttgaaaagaaatcatagaaaaaaactg
aaagttgacaaaattCCTTTACTTTGCAAAAAGATGAGACGGCTAAAATC
CCCGTTGACCGGACGTGTGATTGATTAGTACGACATTCCCCTGATGTGCA
CAAggcagctggcacacaacgtttttacgttcatctaacgttatatcaAC
GTTACGGACGCCAAATGGACGTCAACGGTGCGTGCCAACTGGGAACCCAT
GAAAACATCAATAATCGTCGCAGCAAAacgtaaaaatgaaattcaaagtA
ATGAAAAAAGAGTATTACCTTTGGAAAAACTTGTCAAGTTGGAACTTCAA
TTTCTGTTTGAGtttcttcttcaaaaatcaCCTTCGCTAGATCATGAGCA
GGCTTATGAGCGTGCATATGAAAATACTGCAATCGTGTCTTCTGCCAATC
taatattctttctttttgtagcCAGTAATACTGTTGATTTCTTCCCTGCA
GAGATAAAAAGTAAGAGTTAAATACAGCCTTAAAATTTCGGAAGACTCTA
AGTTGAGTACCGCTTATTTAAAGAAATATGTTCTTGTGTTAGACCGGCCA
AATTCTCTTTGTGAAGATTTTCACTGTATCACACACATAGTATATAAGCT
TACTACCTGTAAAGAGTATAAAAAGAAAGAGTCAAGTCTCGGTTCCACTT
TAACCTTTATAATCTACTAAGCTCGAATAAGTACTTATTAAGCTCAGCGG
GTATTTAATCTCTTTAATAAAGTACATTTCTTTCAGTTTAAACAgtttaa
atgaaacaaaactcTTTAAAAGCAAAAGCTAAATAAATTCGAAATTCTTT
GTCAATATTGTTCAATGCCGACCACAGTAATCCTATATTCTTCTCTGGTT
Cttcagtttttgaaattttcaagtctcaataataattctctttcgaagat
ttttaaaattttcacgtaCCATTACAACAAGTGACGTTAGTACTTAACTG
ATGACGCGACAGAGAAAATGCTTTATCTGAGTTTTATTTCATGAACCCTT
GTCTTTATTATGATTtaatgaatttcaaaaagtaaattAAGCAGCCCTCt
tcaatttttcaagttgtTTCTGCAAACACAAATAGACAATGTTcttcaaa
aatttgagaaactcaaactttaaaaaatttagttgcTAAGGACAACGTCT
TTGCCATAGTAATTCCACAGCACCAGGCTAAAGAAAGGCACACCTTGCAG
TCTGTACAAACATCCTAAACAATGACATATTGTTGTCAATAAGAAATTTG
CATTAACTGATCGATCAAGGGTCTTTAATAACCTTCTAACCAAACGGTTT
AAAATTTCACACAACCTAAGGTTTTTTGTATGCTTAATAAATTCACACTT
CTTTCCTCTTACACGTCCAGACTTTTTCCCCATTAAATACTAAGTTCATT
TTTATGGTAAATATAACATTAACATTATCATTAAGGtttgaattttaaaa
ccaaG
Run BLAST on NCBI

transcript from alignment at sc0000482:34635..45746-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024240 ID=TCONS_00024240|Name=TCONS_00024240|organism=Clytia hemisphaerica|type=transcript|length=11112bp|location=Sequence derived from alignment at sc0000482:34635..45746- (Clytia hemisphaerica)
AATACAAATGGGTGTGACACAAACAACAAATTCGGTAATCCATTTCCAGT
GGGCGATCCGAGAAATTGTCTTATGCAGCAGCCTGATTTGTTAAAAATGG
AGGTACTCCCTGGAACCGGATGGGACAATTTGAGGAACGTCGATATGGAT
GTTGTGTTGGGCGAAAGTTATTCACAATGCAAAACAAGTAAAGATGGTAT
ATATTTAATTCCCGATGAAACTTACTCTATCGCTATAAAAGAAAGTCACG
TGGAGCTGACATCTGATTATTTTGACCACTGGAATAATTACACTTCAACA
ACATCGACCACTATCAATGTTCAAGGTTTTGGCATTACCGAAGAGGGTGT
TATTAGTGGTAAGCTTTCTACTGAATTCCGATCCGTCAAGAGTAATCAAG
TCGACCACAAAGCTGTTACTACGCGTGTCCAACTACGACATAAATTTTAC
ACAGTCAAATCGAAAACGGACACTGATCTACATCCAAATTTCAAATCAAG
GCTACTGGATATCGCATCCCACATACAGTTAAATAATACAAAAATGGCGC
GCTATTTGACTGATTTGGTGGTCCGTGATTACGGGACGCACTATATTACA
AGTATAGACGCAGGTGCGGTTCTATCCAAAATCGATCATATAAAGTCAAC
CTATGCTAGACAAGAACAAAGAGATTCTACCAACATTAGAATCGAAGCAA
GTGCACTTTTTGAACTGTGGGGAGCGAGTACATCAATTTCGCACACGTCA
AGTACGGACAATATCGACGCATATAAAAAGAGTATCACTGCCTCAAGTAT
AAAGAGCCATGGAGGACCCCCGTTCGGCGCGAACTTTACTGTCAAGGACT
GGGAAGCAGGATTAGTCAATAATCTAGCAGCAATAGATAGAGCCGGAGAT
CCTTTATATTACGCTATCGAGCAACAGGCTTTCCCAGAGTTGCCAGATGC
ACTTGTATTTGAGCTGGCAAATTATTTGAAACATTCAATCAAAAGTTATT
ACAAACATAACCTTATAAAAGGGTGCACGAACCCTGATGCAAGGGATTTC
AATGTTCAAGCCATTCTTGATGATCACTCTTGTGAGAAGCCATTCACCAA
TTTCACATTTGGAGGTGTCTTTCAATCGTGCGAAGTGACAAGTAAGTGAA
CTATTTTTGTTACACACATTTTTATTAGATCAATTTTATAAAAACACGAG
CCCGAAGGGCTACAATCATGGACGAAATATTTGAGACAAAGGGAATTTCC
CGGCGAAATTTTAAACACCACAAATGATTTTTAAGCACCTTAAACTACAG
TTGGAAAGTAGAGTTTTAACATGAGACTCAGGATTTAAAAGTTCAAATTT
GCTCGAATAAGGCTTGGAATATAGCCTAGAAGCCACCGAACCCTTCTAAA
ATCGAAATATTCAATGAAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCG
CTCGAACTTTAANATTTGAAACTTTGTGACGTCGCAGTACTTTTTCAAGA
AATTGACGTCAGAACTTTTTTCGTTTACAAATAGCAGTGTAGAGTCTTCT
CTAATGCATTTGACAAGCGTAGAAAACTATATATATAACTCATTGATTAA
AATGAAGAATAAAACAAATATGCAATAAACTATAAAGTGACTGCAAAAAA
GGAATGACAGGTAAGACAGGAAAAACAAAACAAAACAAAACAAAACCATA
CAAAGAAAACGACCCAGAGACTTTAGTCTTCTCTAATCCGAGTTTTCTAC
GAANAATATATTTCGACCATGATTGTAGATTTAGACTTTTGTTGAAAAGT
GTGCCGTAGTTAGGTAGGAAATTCTACCTAAGTCACGTGACATTACGTCG
CTTGTTTTGATTTTGTGGTTTGTTTACAAAATCCTCGTCTTCTGTCCGTC
TAGGTCCGAACAAAAATCTCAACTCCAAGTTGTTTAGTTATATACTNCCA
GCCGCGGCGTTCAAATTTTAGAAACCTTAACATATGTTACTGGGCTAGCG
TTACAGACATTTTTCATAAACTCATTTAGTATAGTAAGATACTGATATAT
ACCAAATTGTTTTTGGTGGTAAAAGAGAATTTAATAAAAAATTACAATAG
AATTTCAGCACTTGACCACTTGCGGGTTTTCGAAAACAATAGCAGCAATA
TTTTTTCCGATATTCACAATTTTTTTTGCCTGCGATGGCTTAAAGCACGA
CATCTAGCCCTTCGTGCTTTATAAATGTATGGTTGAAAATCGACCAAAAC
CTAAGAACAAATTAAAAACAATCTGAGTCTAAGATTCCAGAATTTACTAA
GACAGTACTGGTTTTAACAGGTTTTAAACCAATTTCGAGTTTTTTAGTAA
AGGAACTAAGCATTATAAAAAATACGCCTGAAAATTTCAAAAAATTAAGG
ACATCGCTAGGACATCCTCTAACAAATTCCTGCGGTTTTGTAGAGGTCTG
CGATTCAGACTAGGACATCACAGGCAAAAATTACTGGTTCTTTTAAAAGT
GTCAATAAAATGTATCCGGAAAAATAGATTTCAGTAAGTCGATTACAAGA
ACTTGTATACAAAATCTGTTCCGCTTTTTATTCACTGTAGTTTAAAGATT
TTGTTTTAAAATAAGAGTGAAATCGTTCTCTTACTCATCAATTTTAATCT
ACAAGCTTTTCGATATTGAATTGACACGGATGTTGAGCAAGATTGGTCAG
AATGAGGAATGGGAAAACATTCTTTTGCTTATATCAGCACAACATAACAA
TAGGCAGACACTGTCCTGATATGAAACAGGTGTCTGATATGAAACGGAGA
CACTTATGTAAAAAGAAAACCTTTATTTTCAATACATCTTTTTTTATTTG
AATCAGTATATTCTAGCTGGAGGCTCGGCTGTTCTCATATTTTCCTGATT
TTCAGATATCTGAGGCTGGGGTTATTCTTAATTTGTTCTCAGGTCTGCAT
CAAAATTGAATCGCTAAATTGTTCTTACAAAAATGTTCTTAATAAAAATC
GCGTGTATCAAAACTTCTTTAAGGAAGATCTACCCAAAATTAGGTGTGGC
GTTGTGGGGAAATTTTTCTGGAGGGGCCAAAGTCAATTTTTTAAAAATGG
CGCCCCCCCCCCAATTTTAGAAAGTGATGCCCTCACCCACCAGTTTCTAA
ACTTTTACTAATTCATTTGCCTAGGCATAATGAGGAAGGAAATATTTAAT
CTTTGATGAATGGAAAAAGGGAAAAATAGGCCCCACCATGGTTGGGGCCG
ACTAGAAACTTTTTTTAAATCGACTGCCAAGATACCCTAAATCACTAAAT
AAAAATAGACAAATTTGACGCTTGCTAGAGTGAAAAGAAACTTAAAGAAA
CAATGTTTAATGCGAGCGAAGCGAGCGGAAAAACTGATGGTTCATGATTT
CAATATTGTTGTCAGCAAATTAGTCTTGGGGCGCAGTTAGAATTTCATTT
AATAATTATGCTATATTGTACAAAAAAGACTTGTAAAATACCTAGATTGC
AAAGAAGTTACCAATTAACTTTATTGCGAGCGAAGCGAGCGAAAAAAAAT
GCAAGTATTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTGTGATGTTGATTAGGCAGGACAAAGGATAAAGCCATTT
TAATTCGAAGAACCAAAAACTTCAAATGTATGGTAGTTCAAATAACTTGG
GGTCAAAAATTTTTCGACTCCTCCATATCTGGGAGTTGAATGTAAGTAGT
CGTAATACACCTCAGTAGAAGAAAAGTGGGAGAAAATGGAAAAATCTAAT
TCGGATTCTAAGAGGATGTCCTTGAACTCTTCGTTCAACTGACAACCATC
AGATGCAGGGCCCACGCCATGAAATTGAAAGTGGGGGAGGGCAATGAATA
TAGAGTCTAAGGAGACGCAACCAAAACATTTTACTTTGCAAAAAAGTGGG
TCGGTGGCGTGGGTCCTGAGATGAATATTCTCTTTCTCGATTTTTCATCT
AGACATACCCCATAGTGAAGCTAAATGTGACGAGAAGAAAATACAAAAGA
ATCCGAAAACAGATGCTTATACATGTGAAGAAGGATACCAGCCTGTGTTC
TTGCACCGTCATGATGAGGAGTCAGGCTGCAAAAGACATTGTAAACATTT
CTTGTTTTGGTCATGGCACTGTCGTACGTATTGTGGGACTGCACACTATT
CCACTTATTGGTGTGCTGCTACAGGTAAGGTTGCTTCTTCATAGTATGTA
CCACTGTAATGACATCATGATATGATCACTCTTTTTTTATAAGCATACGG
GAAAATCCGGTCGAGGCTTATATGCTTAGAAAAATCTCATTTTAAGCCTA
AATTTATGTTTATTTATATGCTTGGACTTATTTATTAATTTTCTTCCTGG
TTCATGAAAATTTCGAATTTTTAAGTCGGAACATTGATTTGTTTCAAAGA
ATGAAATTTTCGTTGTAATTTGGCGTCGCGGGCAAAAATCTTTGCTCTAA
GAAAGCTAAAACAGTTTTAAAAGTAACCCTAAAAAGGTCAGCGTTTTAAA
AAAGCTGCACAACTTTTTTTGCATTTCATCTTGGAGGTATGCTTNGCGTT
TTAAAAAAGCTGCACAACTTTTTTTGCATTTCAGCTTGGAGGTATGCTAA
GCATTATGCTTATGTTTTACCGAATTTGAGCCCAAGTATGCTTGTAAACG
TTTGTAACACGTCTGGATTTTTCCACCCAGCAGTGTCACTTTCTATCCAA
ACGGCTGTTTTTAAAGAAGACATTGTAGTCTTAAAGCAGACATTGTAAAT
GAGCATATCCTTAATAGTAGGGGGCCAACCCTTAAGCTCCATAGCATCTT
TCGTGGGACGCAACCGTGATTGGTTCGAAAGCATAGAAGGATTATGAGAC
TCTTTCGAGAGGGGGCCCGCGAATTAGGTGTGGCAAAATGTTTATGACTT
AAAGAGTGACAATAAGGCAAACCCCAAAATGAGTGAAGAATCGAAAATTT
TCAAAAGTCAAATCCAATAAAAAACATCTTTGATACCATCTTGGTACAAT
CTCTCTTTCTGGAGCACTACTAGAATCTACTACCTTTTTAAAGGAACAAA
TTTTCGGGGAAAGAAATTATCGCGGTGGAGAGGAATTTTTGTTTAAAATA
TGGCTTATTTTGCCCCAATTCTATAGGGGATTTTTTATATCAGGAGAATA
TTCTTTTTACATGGAATTAAATTTGGCGAATTTGTCGAAAAACCGCGAAA
ATTTGTTCCGCGAAGATTCCTTCCTTTAAGGTAAGTGACTCACTTACTTA
TTGCGAAACGTGTAATTTTTAACCCTAAGTTACCGATATTCGTTTATAGG
TCCTGTGAAGCAAGGAGAAGGCTTTCTTTTCGGTGGTATGTACAATAAAC
TGATGGTGAACCCATTGACAGGCGGTAGCAGTTGTCCACCCAAATTCTAC
CCACAAGTCTTTGGACCCGAAGATATGTATGTATTAAATTATTAACTTTT
AAATTAGTGGAAACCAAACCACCCTTTAAAATGTGTGCTCTTGGAATTTA
TACAAAATCCGTCAAATATCATTATGTAAATTCAGTCCATTATCACGATC
CCAAATCACTTTTAATGAAAGAAACATCGAATCAAGATATTCACAAAGCA
GATAGGGAGAGTTTGGCAGTGGCAGGATTTAAGCTCAAATTTGCTCCAAC
ATAAGGCTTGGAATATAGCCTAGAACCCAGCGAACCCCTCCAAAATCAAA
ATATTCGATAAAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCGCCCGAA
CTTTAAATTCTGAAAAACGTTAAATACACTAAAATCTCAAATCGACCATG
ATTGTAGGTAAATCTCCAGTACTTTTTGGGGGTGACACTAATGATTATTT
TTTGTTGTAGGTTTGTTTGTATCAGTGATGATTATGAATTGGCAAGGCCG
TATTCAATTCCGTTCTCTGGCTTCTTTAGTTGTTCAATTGGTAACCCATT
GGCTTTGAATAAAAACACAAGTAAATACACGTTTTTTATATATAATAGAG
TGGGGTCTCTTTAACTCAAACCTCTAAAACTCGAATATATCCTTAACTCG
AACAACTTTTATGATCCCTTCAGTATCTCACTCCATAATAGAAATTTCCT
TAAGTCGAGAAAATTTGTGTTCCCTGTGCGTTTTCGAGTTACCCCGAGAC
TCGACTGTAAGAACAAACTATATAGGAACATAATAAAGATTCGATGACAA
CAATATTAAGAACAAGAACATTTTAAGGCTTTGCGAACTCTAAAACACCC
AATTTCTTAGGAAAATGAAAAAAAATACTTACAAAATGGTGCAATAAAGA
ACATTTTTAGGCCTAAAACTCAAAGAAGTTAAGAACTTCCGGAGGCTTGC
AAAGATTTTGGATGTTTTCGTAAAAAAAGTAGTACATCGAAACATTTTAA
CATTCTGTTTGTAGACAATAGGGGGCCAAATGGTTGGCCGAAGAGTTGTC
CTGAAAACTACGCGCAACATTTAGCAGTTGTAGATGACACCTGCGAGATA
AATTATTGCGTTAAAGTTAACTCCCTATCCGCACTGGGCGGGCTGGCGCC
TGTGAGGCAACCGCCCTTCCGTTCAAAACCGAAAAGGAATATGAATATTA
CAATCCCTCTCACAATTATTAATGATGAAACGAAAAGTGTATGGTTCAAA
AGCTTAGATAACCAAAAATGGACAAAGGCTAATAAAAGGTACGGTAAACG
TTTTTTATTAGCATGTCTTCATTTTTGCTGAGCCTGGTATACACTTAAAT
ACAGAATTACCTTGGGTTTAAATTGACCCTCGAGTTAATCTAATCTGCTC
AAATTCAAGGGTTTGAAGCAAAAGATTTACTGAATTACGAAAGTTGCTTA
CTTATTACTGTACTGCTTACTTCTTGATGTACTGATATACTGAATTTATC
GATTCAAAAGGCATTTTTAGGCATTTTTTAAATCGGAGGAATTGCCCTTA
ATATAAGTCTGAAAAAAATCGAATACAGGAGAAGCTGATTGGGAGAAAAT
CAAAGAAACTTTATTTATTTGATCTCGTTCGTTCGTGTAAAGAATTCTCA
ATCAGAAAAAAAAAATGTCAAAAATCTTTAAGTTAAGGGGAGTACAAACA
AGCATAAACCATCTTCCTATAAAGCCTTATTTTTTAAAGATGTATCTGAA
ATGTGACTCCGGATAGATATATAACACCTTTAAAAAATGTCTTATTTTAG
CATTATACTGGACCGCCTTGCCGAGATCGGGATTACAAACGTTGCCGAAG
ATGACATTACACATATAGCGGAAAACGTGATGAATAGAGGAGCTATTGAT
ACTTTGAAAGCATCCGTAACTCGTATGTCGNATGACATTACACATATAGC
GGAAAACGTGATGAATAGGGGAGCTATTGATACTTTGAAAGCATCCGTAA
CTCGTGTGTCACCAGCTGAGAAAAAGGAAGCTGAAATATCCAAATCTACC
GGAAGTGGTGGTGGTGGTTCTAACCAACCAGTATCGAATGGAACAGCTGT
AGGAATCACCATTGGTGTTCTTGCGATTGTTCTTATTATTGTTCTGGTAG
CTGTTACCAAGTTTCAACGAAAGAAGAAACAACATAGAAGAGGTTTTAAT
GAGATACCCGCACCTGGCTCCAATGAGCCGCAAACGGACCAAGATTATCA
TGCCATGTGATTTTGTGAGAAGAATACAGAAGAAAAACCGAGGAAGACTT
TGGCAAAAGAAAACATAATGACGTAGCAAGACCTAGTGTATTGTGATATA
GACGTTAAAATATTAATCTCAATTTTAATCAACTGCCCTGATTTGGGGAA
TTTCTTACCCTTAATTAGAAATCATCAGCTATCCTGGTCTACGTTTTCAA
CACACTACTGCTTGGAGGTAGATTTTTTATACTTGTACAAATTGGCCACT
GATTTTTGCTGTTCCAAGTTGGGAAGGGCTTGGCCATGTTAGGACTACTT
TCGATTCCAGTCTTTTATGGGCTGTCCCAGAAAAGAATTGTACAGGACCC
CTTTGGATTTCTTTTTTTTTTCAATCTTTGGACCACCCTGGATTTTCAAC
CTCATTTCATTGACCACCTGGAGTTTTAAAATCAAAAAACCAAACGCCCC
AGGATTTTTTAATTTTCGGACCACCCTGAACGCCACACATGCTCAACAAA
GGGGTACAGACTATTTCTGGAATAGCCCAATAAATTTAGACAACAGAATA
CATAATTGGCGTAGATTTTTTGGATTTTACGAATTAACAAAAAGACGGAC
TTTATCAAAGTTAGCAGAAATCATTTTCTAGCATTATAATTTGCAAATAT
TTCAACAGTCAAGACGAAAATTTCTCTCTTCAAGCACTCGAGAAAGATTG
CAAAAAGAAATTGTGCAAAAGACTTCGTAAAAACACATGTCAAGACCAGT
AGAAAATAATTTCTTCTAAAAAGGTGTAGTTCCAAATTTAGAAAAACAAG
AACTTCAAACTGAGCTTAACTAGCCTCTTTATTCAGAAAAAATTCTCAAA
TAATTGACTTTGTCAATCGTGGTTGGGGAACATAAAAAAGTTTTGAATCT
TAGGAGCTAAAAGTGTTAACTTCGGGCTCTTCCGGAAAATGTTCGCACAT
GGGGGTGGGTGGGATATGATGTCCGGGGGGTAGTAAAAAATCTACTAAAT
TTGCCTTGTCCCGGGGGTAAACTTGCTCTGTTTGTTTTTCTAAAATGTCC
AGGGAATCAACTGATGCTTGTCCGGGGGGTTAAACCTGCTGTCCAGGGGG
GGGGGGAAATTTCCAAAAATGTTATACTCTCCACCTCCCATAATCAATTT
TTTCTGGAAAAGCCCCTTCTTCGAGTCGATTTGAAAAGAAATCATAGAAA
AAAACTGAAAGTTGACAAAATTCCTTTACTTTGCAAAAAGATGAGACGGC
TAAAATCCCCGTTGACCGGACGTGTGATTGATTAGTACGACATTCCCCTG
ATGTGCACAAGGCAGCTGGCACACAACGTTTTTACGTTCATCTAACGTTA
TATCAACGTTACGGACGCCAAATGGACGTCAACGGTGCGTGCCAACTGGG
AACCCATGAAAACATCAATAATCGTCGCAGCAAAACGTAAAAATGAAATT
CAAAGTAATGAAAAAAGAGTATTACCTTTGGAAAAACTTGTCAAGTTGGA
ACTTCAATTTCTGTTTGAGTTTCTTCTTCAAAAATCACCTTCGCTAGATC
ATGAGCAGGCTTATGAGCGTGCATATGAAAATACTGCAATCGTGTCTTCT
GCCAATCTAATATTCTTTCTTTTTGTAGCCAGTAATACTGTTGATTTCTT
CCCTGCAGAGATAAAAAGTAAGAGTTAAATACAGCCTTAAAATTTCGGAA
GACTCTAAGTTGAGTACCGCTTATTTAAAGAAATATGTTCTTGTGTTAGA
CCGGCCAAATTCTCTTTGTGAAGATTTTCACTGTATCACACACATAGTAT
ATAAGCTTACTACCTGTAAAGAGTATAAAAAGAAAGAGTCAAGTCTCGGT
TCCACTTTAACCTTTATAATCTACTAAGCTCGAATAAGTACTTATTAAGC
TCAGCGGGTATTTAATCTCTTTAATAAAGTACATTTCTTTCAGTTTAAAC
AGTTTAAATGAAACAAAACTCTTTAAAAGCAAAAGCTAAATAAATTCGAA
ATTCTTTGTCAATATTGTTCAATGCCGACCACAGTAATCCTATATTCTTC
TCTGGTTCTTCAGTTTTTGAAATTTTCAAGTCTCAATAATAATTCTCTTT
CGAAGATTTTTAAAATTTTCACGTACCATTACAACAAGTGACGTTAGTAC
TTAACTGATGACGCGACAGAGAAAATGCTTTATCTGAGTTTTATTTCATG
AACCCTTGTCTTTATTATGATTTAATGAATTTCAAAAAGTAAATTAAGCA
GCCCTCTTCAATTTTTCAAGTTGTTTCTGCAAACACAAATAGACAATGTT
CTTCAAAAATTTGAGAAACTCAAACTTTAAAAAATTTAGTTGCTAAGGAC
AACGTCTTTGCCATAGTAATTCCACAGCACCAGGCTAAAGAAAGGCACAC
CTTGCAGTCTGTACAAACATCCTAAACAATGACATATTGTTGTCAATAAG
AAATTTGCATTAACTGATCGATCAAGGGTCTTTAATAACCTTCTAACCAA
ACGGTTTAAAATTTCACACAACCTAAGGTTTTTTGTATGCTTAATAAATT
CACACTTCTTTCCTCTTACACGTCCAGACTTTTTCCCCATTAAATACTAA
GTTCATTTTTATGGTAAATATAACATTAACATTATCATTAAGGTTTGAAT
TTTAAAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013605XLOC_013605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024240-exon-sc0000482-1575043694:44606..45746TCONS_00024240-exon-sc0000482-1575043694:44606..45746Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1575043694:40773..40994TCONS_00024240-exon-sc0000482-1575043694:40773..40994Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1575043694:39521..39647TCONS_00024240-exon-sc0000482-1575043694:39521..39647Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1575043694:38977..39086TCONS_00024240-exon-sc0000482-1575043694:38977..39086Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1575043694:38259..38532TCONS_00024240-exon-sc0000482-1575043694:38259..38532Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1575043694:37616..37746TCONS_00024240-exon-sc0000482-1575043694:37616..37746Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1575043694:34635..37534TCONS_00024240-exon-sc0000482-1575043694:34635..37534Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1510915933:44606..45746TCONS_00024240-exon-sc0000482-1510915933:44606..45746Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1510915933:40773..40994TCONS_00024240-exon-sc0000482-1510915933:40773..40994Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1510915933:39521..39647TCONS_00024240-exon-sc0000482-1510915933:39521..39647Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1510915933:38977..39086TCONS_00024240-exon-sc0000482-1510915933:38977..39086Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1510915933:38259..38532TCONS_00024240-exon-sc0000482-1510915933:38259..38532Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1510915933:37616..37746TCONS_00024240-exon-sc0000482-1510915933:37616..37746Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1510915933:34635..37534TCONS_00024240-exon-sc0000482-1510915933:34635..37534Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1491911889:44606..45746TCONS_00024240-exon-sc0000482-1491911889:44606..45746Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1491911889:40773..40994TCONS_00024240-exon-sc0000482-1491911889:40773..40994Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1491911889:39521..39647TCONS_00024240-exon-sc0000482-1491911889:39521..39647Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1491911889:38977..39086TCONS_00024240-exon-sc0000482-1491911889:38977..39086Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1491911889:38259..38532TCONS_00024240-exon-sc0000482-1491911889:38259..38532Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1491911889:37616..37746TCONS_00024240-exon-sc0000482-1491911889:37616..37746Clytia hemisphaericaexon
TCONS_00024240-exon-sc0000482-1491911889:34635..37534TCONS_00024240-exon-sc0000482-1491911889:34635..37534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000482supercontigsc0000482:34635..45746 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0467054	0.0727071	0.110867	0.141052	0	0.00808308	1.11153	0.868892	2.26032	4.82213	3.49391	1.17899	2.26114	1.94541	14.3154	5.9318	3.22581	3.06103	8.22212	8.18491	2.36039	1.63675	3.8134	4.04264	10.3261	7.89846	7.75343	17.2226	11.3975	13.4567
Blast
[Close]
BLAST of TCONS_00024240 vs. Swiss-Prot (Human)
Match: MPEG1 (Macrophage-expressed gene 1 protein OS=Homo sapiens GN=MPEG1 PE=2 SV=1)

HSP 1 Score: 438.728 bits (1127), Expect = 8.324e-135
Identity = 230/600 (38.33%), Postives = 348/600 (58.00%), Query Frame = 1 
Query:   97 MEVLPGTGWDNLRNVDMDVVLGESYSQCKTSKDGIYLIPDETYSIAIKESHVELTSDYFDHWNNYXXXXXXXINVQGFGITEEGVISGKLSTEFRSVKSNQVDHKAVTTRVQLRHKFYTVKSKTDTDLHPNFKSRLLDIASHIQLNNTKMARYLTDLVVRDYGTHYITSIDAGAVLSKIDHIKSTYARQEQRDSTNIRIEASALFE-LWGASTSISHTSSTDNIDAYKKSITASSIKSHGGPPFGANFTVKDWEAGLVNNLAAIDRAGDPLYYAIEQQAFPELPDALVFELANYLKHSIKSYYKHNLIKGCTNPDARDFNVQAILDDHSCEKPFTNFTFGGVFQSCEVTNIPHSEAKCDEKKIQKNPKTDAYTCEEGYQPVFLHRHDEESG-----CKRHCKHFLFWSWHCRTYC------GTAHYSTYWCAATGPVKQGEGFLFGGMYNKLMVNPLTGGSSCPPKFYP-QVFGPEDMFVCISDDYELARPYSIPFSGFFSCSIGNPLALNKNTNNRGPNGWPKSCPENYAQHLAVVDDTCEINYCVKVNSLSALGGLAPVRQPPFRSKPKRNMNITIPLTIINDETKSVWFKSLDNQKW 1857
            +EVLPG GWDNLRNVDM  V+  +YS C+T++DG Y+IPDE ++I  K+S++E+ S+  + W NY S+TS +IN +   ++    ++GK STEF+ +K+ QV  +A+TTRVQ+R+  YTVK     +L   F+  LLDI+  ++ N T+MA YL +L+V +YGTH  TS+DAGA L + DH+++++ +  Q   + +   A   F+         ++TS      +Y  + T S ++S GG PF    T++ W+ G+ N+L AIDR+G PL++ I     P+LP  LV +++  ++ ++K YY  N   GCT+ ++ +FN QA  DD SCE   TNF+FGGV+Q C   +       C +K  QKNP T  ++C  GY PV L     E G     C R C   +F    C+T C        A +  +WC A+  V +  G LFGG+++   +NP+T   SCP  ++P ++F  E++ VC+S DYEL   +++PF GFFSC++GNPL     + + G     K CP  ++QH A++ D C+++YCVK + L   G L P R PPF   P  +   T  + + N E    W K     +W
Sbjct:   43 LEVLPGGGWDNLRNVDMGRVMELTYSNCRTTEDGQYIIPDEIFTIPQKQSNLEMNSEILESWANYQSSTSYSINTE---LSLFSKVNGKFSTEFQRMKTLQVKDQAITTRVQVRNLVYTVKINPTLELSSGFRKELLDISDRLENNQTRMATYLAELLVLNYGTHVTTSVDAGAALIQEDHLRASFLQDSQSSRSAVTASAGLAFQNTVNFKFEENYTSQNVLTKSYLSNRTNSRVQSIGGVPFYPGITLQAWQQGITNHLVAIDRSGLPLHFFINPNMLPDLPGPLVKKVSKTVETAVKRYYTFNTYPGCTDLNSPNFNFQANTDDGSCEGKMTNFSFGGVYQECTQLSGNRDVLLC-QKLEQKNPLTGDFSCPSGYSPVHLLSQIHEEGYNHLECHRKCTLLVF----CKTVCEDVFQVAKAEFRAFWCVASSQVPENSGLLFGGLFSSKSINPMTNAQSCPAGYFPLRLF--ENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPLVDPAISRDLGAPSL-KKCPGGFSQHPALISDGCQVSYCVK-SGLFTGGSLPPARLPPFTRPPLMSQAATNTVIVTNSENARSWIKDSQTHQW 630
The following BLAST results are available for this feature:
BLAST of TCONS_00024240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MPEG18.324e-13538.33Macrophage-expressed gene 1 protein OS=Homo sapien... [more]
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