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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024249 ID=TCONS_00024249|Name=TCONS_00024249|organism=Clytia hemisphaerica|type=transcript|length=2109bpRun BLAST on NCBI transcript from alignment at sc0000482:137437..164623- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024249 ID=TCONS_00024249|Name=TCONS_00024249|organism=Clytia hemisphaerica|type=transcript|length=27187bp|location=Sequence derived from alignment at sc0000482:137437..164623- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024249 vs. Swiss-Prot (Human)
Match: VP33A (Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1) HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0 Identity = 338/599 (56.43%), Postives = 441/599 (73.62%), Query Frame = 3
Query: 84 AHLSSGRVNLAQMREGIRRQLLRCLDKCPGSKAIIWDDKLTGPVGLIAEYSLLKEHDVGKMFPLVRGKLPSCEEHNIIFLVRPKLETMDIIAENVKGYGKNH-SKEFHIFFVPSKSNLCELSLEKSGVYGSFSVIDEFDLSLIPFDNDIMSLEQEKAFYECYVENDLTSMLYVANSLMTIQALFGTIPKIYGKGQLAKHVTDIILRKRREMADNECQITPLIDNLVLIDRNIDLLTPLLTQLTYEGLIDESLKIENTCCQVPTPKDEPKNKQQPEGIQKAKPKKVILNSGENLYAEIRDMNFSAVGPVLSREAKRITAEYEEHRAAKTVGEMKEFVHKLPHIQAAKQSLAQHTSIAELMKEHTDSDDFRESLRVEQEFFHGIDTDKAHPYIEQCIGVKEPIQKVLRLVCLQCFVNNGFKVKLFDYYRREIIQTYGFEHLLTLNNLETVGMLR-STMQQRNYNLLRKSLKLVVEDVQETQPNDIAYVHSGYAPLSVRLAQFLERQSGWRGLEEILKQLPGPTVEEKQNIPAALLKKNTGGQSNADGPPRVTLVYFLGGCTYSEISALRFLAQQENASTDYVIATTNIINGTSLVESAIEQ 1874
AHLS GRVNL +RE +RR+L LDKC GSKAI+WD+ LTGP GLIA+YSLLKEH+V KMF L +LP+ + NIIF VRP+LE MDIIAENV + +++FHI FVP +S LCE L+ GV GSF +E+ L LIPFD D++S+E E AF ECY+E D TS+ + A LMT+QAL+GTIP+I+GKG+ A+ V ++++R +RE ++ I P+ DNL+L+DRN+DLLTPL TQLTYEGLIDE I+N+ ++P K PK + + KK+ LNS E LYAEIRD NF+AVG VLS++AK I+A +EE AKTVGE+K+FV +LPH+QAA+ SLA HTSIAEL+K+ T S+DF + L VEQEF GIDTDK + YIE CI K + KVLRLVCLQ N+G K K+ DYY+REI+QTYG+EH+LTL+NLE G+L+ T + NY +RK+L+L ++DV E P DI+YV+SGYAPLSVRLAQ L R GWR +EE+L+ LPGP EE+Q +P L KK G++ RVTL++FLGG T++EI+ALRFL+Q E+ T+YVIATT ++NGTS +E+ +E+
Sbjct: 3 AHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAELIKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGLKQKVLDYYKREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSR-PGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQPGEN------RVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALMEK 594 The following BLAST results are available for this feature:
BLAST of TCONS_00024249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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