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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024253 ID=TCONS_00024253|Name=TCONS_00024253|organism=Clytia hemisphaerica|type=transcript|length=3355bpRun BLAST on NCBI protein sequence of TCONS_00024253-protein >TCONS_00024253-protein ID=TCONS_00024253-protein|Name=TCONS_00024253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=836bp MTTDILTKLLLTQVFXSLSQAADNVIHINAYTPYYLNDDRHSYKAALDTGRun BLAST on NCBI transcript from alignment at sc0000482:222622..239657- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024253 ID=TCONS_00024253|Name=TCONS_00024253|organism=Clytia hemisphaerica|type=transcript|length=17036bp|location=Sequence derived from alignment at sc0000482:222622..239657- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000482:222622..239657- >TCONS_00024253 ID=TCONS_00024253|Name=TCONS_00024253|organism=Clytia hemisphaerica|type=CDS|length=40176bp|location=Sequence derived from alignment at sc0000482:222622..239657- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024253 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.585e-40 Identity = 160/618 (25.89%), Postives = 268/618 (43.37%), Query Frame = 2
Query: 1025 NDMLVPIQKIKENDIRIIIFNGVQFPSWYYRAYCLLRQNNMVFPRYQTVMIEKSGYVMLDQTQIFFYPGRLNMECTLLEIFEAMESTIRIAPQKSRSFGSKTDYGNKTVGDVFEMLKINHDKNKQWLIDTIRAKAPN-----FDFRRLSL-PATERGALYLVDEIYRMGMAFDSLLK--QNGDPNNVFLDTKYNNVTKMRNFYKAFNDVNFLGVVGDYNPQSIREG-RHTAITFQKLRFTFNARKPSGLFSDIGSYQLHTGDFQWF-ESIKSHFKNGSILTDRMTRLE--KRVTYNDYAWITSWSVNIFGIVCSIVIFFLNNVYRNIKALKLTSPVVNNVMIFGSVLCYLSMIFYGMDTRFVVAGNVTAMCSASTVSLVTGFSIVFGSLFGKTWRIYRIFTSSRHNKKMKLKDYHIILFVAILLCIDIAMMASWFTVSPYETKNIILSSHENKT-LDIITTEYFQRCESIHNSYFLTAIIIEKAVFLILGIFLAWETRKVNIPVLNDSRYIASSXXXXXXXXXXXXXXXXXLHSTEHYNEVYLILSIVVYVATTSTIFLAMLPKLTVL--------------FGKNTLERQRTASTSSLAVKNAT----EELKSQKKR 2785
ND ++K+K ND+RII+ Q + + +C + NM +YQ ++ +Q R C + AME I G FE L +KQ I TI K P ++ +R + P+ G Y D I+ + ++ + D Y + T R A N+ NF GV G R G R I F + + + + +G Y + ++I+ F+ D+ LE ++++ Y+ +++ + I G++ + F N RN K +K++SP +NN++I G +L Y S+ +G+D FV +C+ T L G++ FG++F KTWR++ IF + + KK+ +KD +++ V +L ID+ ++ W V P S + DI + CE+ H + +L + K + ++ G FLAWETR V+IP LNDS+YI S+Y V I I G + + + N + I+++V+ +T T+ L +PKL L F +N + STS +V A+ E L+S+ R
Sbjct: 234 NDPCTSVKKLKGNDVRIILGQFDQ--NMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSR----CLRKNLLAAMEGYI---------------------GVDFEPLS-----SKQ--IKTISGKTPQQYEREYNNKRSGVGPSKFHG--YAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQV---VFRNGERMGTIKFTQFQDSREVK--------VGEYNAVADTLEIINDTIR--FQGSEPPKDKTIILEQLRKISLPLYSILSA--LTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFL--TRDQPNVQFCIVALVIIFCSTITLCLVFVPKLITLRTNPDAATQNRRFQFTQNQKKEDSKTSTSVTSVNQASTSRLEGLQSENHR 797 The following BLAST results are available for this feature:
BLAST of TCONS_00024253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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