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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024269 ID=TCONS_00024269|Name=TCONS_00024269|organism=Clytia hemisphaerica|type=transcript|length=3851bpRun BLAST on NCBI transcript from alignment at sc0000486:50016..62288+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024269 ID=TCONS_00024269|Name=TCONS_00024269|organism=Clytia hemisphaerica|type=transcript|length=12273bp|location=Sequence derived from alignment at sc0000486:50016..62288+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024269 vs. Swiss-Prot (Human)
Match: TTC28 (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4) HSP 1 Score: 548.895 bits (1413), Expect = 1.498e-165 Identity = 334/905 (36.91%), Postives = 532/905 (58.78%), Query Frame = 3
Query: 12 NERFSQGYYRQAIALQCMGRHXXXXXXXXXXXXHDEKSQQLLQALMEASLKSNLQETLEPLFEQLEASDISGKAFATVAIIGQELLASDELQPAITVLESSLQLGTDDLSLKGSVYSALSSAYWKNGNVKRALHFMHQDLLTVESLDDNSGVCRVHGNLGNAYFCQNLLSDAQQHHQMQLDIATQQDDTRQAANALTALGHVFVASGDYENALSHHKRSAVLRQEIGDLLHEAKELANVGAVYALLGDFDNAIKCQEEHLKIVMDLEEHFEICHAMSLLGGLYQRIQKYEQSAKIYQEMFRISQESNDYENQCNALSGLGMAYRLQGKLKMAENCHEQQLKIAIEIQNRSLEAKAQADLGLTYQEKKDFAKALEYQKSYLESCRTIDDREGESRAYGNIGDAYQALEQHERAIKYYKLGLSVAKDVDDHHLEGSLHGKIAASYQALEMVDNALKHHKEYLSIAVELKDLRAECTAECNLGNFYSQQERFEEAVSHYENGSAVANKLQDKAEMCKATHNLAYAYYRLKNYNESIEFYEENISLANDLDDRELLSMAYCNLGLAYLAMNDFEKAVRCQKLFLASAREKKNTVNVCKALGNLGKIYIEMGDVEEGLRFFYEKVKAAEKSKDLTLQADCNHELAKVLENEGNIEEAEARFEKELTLRRQIDDKPQQ---------FYQAIYAYXXXXXXXXXXXXXXXXYCEVFQHAKQLGNLEQCKTVCQLMGRINMRMEKYDKAIIAFRLQLECISDTVNNS--IDSGHVHLDISECYKMVGNHDNAIHHLLQYQQIATVLQLTDEENIAYKKLSDIHIYQGTYQEALMYSEKRLICCQEL-EKSEICDAYKNVAFVHALLQNYDSAISYYEKLLASARDLKLTHYEYHAYRGLGDSYKLIKEYEKS 2690
N ++ + Y+RQ +ALQ +GRHA+ALAA+AS LA D KS QLL ++EA++KS ++++LEP ++QL+ + F V+++GQELL + ++ VLE++L++GT L L+GSV+SALSSAYW GN +++ +M QDL ++L D +G CR HGNLG+A+F + +A +H+ QL +A + D A++AL++LGHV+ A GDY NAL+ HK+ +L ++ D L EA+EL N+GAVY +GDF+NA++C E+HLKI DL E A S LG Y + ++++ + + ++QE + + A +GLG A R L+ A+ HEQQL IA ++++R+ E +A ++LG+ +Q K D+ AL+ K++L + + D + RAYGN+G+AY AL +++A+KY++ L ++ +V+D + S HG +A +YQAL D AL+H++ +L+IA EL+D+++E A NLGNF+ + + +A +YE +A LQD K HNL YA+Y L NY E++++YE++++LA DL D+ + AYCNLGLA+ A+ +F KA CQK L+ A+ N+ +ALGNLG I+I D+ ++F+ +++ A + KD L+A L ++A +EL + +++ D P + Y A+ Y A K Y E ++L + V MG M M ++AI F QL + N +D G + ++ +CY+ +G+++ AI + QY +A L ++ AY+ L + H G+ Q+AL+ EKRL+ EL E AY + +H+ L NY+ AIS E+ L ARD+K E A GLG Y+ + EY+ +
Sbjct: 122 NPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLKLRGSVFSALSSAYWSLGNTEKSTGYMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKY----------TMAFKCYEEQLDLGQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTA 1016 HSP 2 Score: 218.394 bits (555), Expect = 3.586e-57 Identity = 199/777 (25.61%), Postives = 357/777 (45.95%), Query Frame = 3
Query: 354 VYSALSSAYWKNGNVKRALHFMHQDLLTVESLDDNSGVCRVHGNLGNAYFCQNLLSDAQQHHQMQLDIATQQDDTRQAANALTALGHVFVASGDYENALSHHKRSAVLRQEIGDLLHEAKELANVGAVYALLGDFDNAIKCQEEHLKIVMDLEEHFEICHAMSLLGGLYQRIQKYEQSAKIYQEMFRISQESNDYENQCNALSGLGMAYRLQGKLKMAENCHEQQLKIAIEIQNRSLEAKAQADLGLTYQEKKDFAKALEYQKSYLESCRTIDDREGESRAYGNIGDAYQALEQHERAIKYYKLGLSVAKDVDDHHLEGSLHGKIAASYQALEMVDNALKHHKEYLSIAVELKDLRAECTAECNLGNFYSQQERFEEAVSHYENGSAVANKLQDKAEMCKATHNLAYAYYRLKNYNESIEFYEENISLANDLDDRELLSMAYCNLGLAYLAMNDFEKAV---RCQKLFLASAREKKNTVNVCKALGNLGKIYIEMGDVEEGLRFFYEKVKAAEKSKDLTLQADCNHELAKVLENEGNIEEAEARFEKELTLRRQIDDKPQQFYQAIYAYXXXXXXXXXXXXXXXXYCEVFQHAKQLGNLEQCKTVCQLMGRINMRMEKYDKAIIAFRLQLECISDTVNNSIDSGHVHLDISECYKMVGNHDNAIHHLLQYQQIATVLQLTDEEN------IAYKKLSDIHIYQGTYQEALMYSEKRL-ICCQELEKSEICDAYKNVAFVHALLQNYDSAISYYEKLLASARDLKLTHYEYHAYRGLG 2654
YS L SAY N +A+ + + L + L + + R + LG+A C L A+Q+H+ QL IA D A + LG + GDY+ AL HK + QE+ D + + N+G Y LG +D A+K + L+I M++ + L YQ + ++++ + YQ I++E D +++ ALS LG + +G+ A +EQ L++A ++Q+ E K +LG + ++ +A++Y + L + + D+ +++AY N+G A++AL +A + K LS+A+ +++ + G + + + ++ A+K +++ L +A ++KD R E +A LG Y +++++A+ ++ V +L D C+A +LA Y L Y + + YEE + L L D L + Y N+G+ + MN E+A+ Q L ++ ++ +A GNLG Y +GD EE ++++ + + A+ + QA L G++++A FEK L + ++ E F A+ G L G ++ ++ Y++AI QL D + +++S + Y+ +G +D A LQY Q+ LQ+ +E N AY L + GT++ A++Y E+ L I Q + + +Y ++ H LQNY A+ Y ++ L A L E GLG
Sbjct: 396 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELG-------------------------------EAFNKAQAYGEL----------GSLHSQLGNYEQAISCLERQLNIARDMKDRALES-DAACGLGGVYQQMGEYDTA----LQYHQLD--LQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLG 1124 HSP 3 Score: 178.718 bits (452), Expect = 6.461e-45 Identity = 144/549 (26.23%), Postives = 265/549 (48.27%), Query Frame = 3
Query: 333 DLSLKGSVYSALSSAYWKNGNVKRALHFMHQDLLTVESLDDNSGVCRVHGNLGNAYFCQNLLSDAQQHHQMQLDIATQQDDTRQAANALTALGHVFVASGDYENALSHHKRSAVLRQEIGDLLHEAKELANVGAVYALLGDFDNAIKCQEEHLKIVMDLEEHFEICHAMSLLGGLYQRIQKYEQSAKIYQEMFRISQESNDYENQCNALSGLGMAYRLQGKLKMAENCHEQQLKIAIEIQNRSLEAKAQADLGLTYQEKKDFAKALEYQKSYLESCRTIDDREG---ESRAYGNIGDAYQALEQHERAIKYYKLGLSVAKDVDDHHLEGSLHGKIAASYQALEMVDNALKHHKEYLSIAVELKDLRAECTAECNLGNFYSQQERFEEAVSHYENGSAVANKLQDKAEMCKATHNLAYAYYRLKNYNESIEFYEENISLANDLDDRELLSMAYCNLGLAYLAMNDFEKAVRCQKLFLASAREKKNTVNVCKALGNLGKIYIEMGDVEEGLRFFYEKVKAAEKSKDLTLQADCNHELAKVLENEGNIEEAE 1970
D+ + S L + + G +A + Q L L D G +V NLG A++C +A ++++ L +A D A A LG F A ++ A K L Q + + + + L N+G ++ D + AIK E+ L + +++ A + LG Y+ IQKY+++ + + + QE +D +C A L Y GK MA C+E+QL + ++++ SLEA+ ++G+T +A+ Y + L + + E RAYGN+GD Y+AL +E AIKYY+ LSVA+ ++ + + + ++A+ + AL ++ L +A EL + + A LG+ +SQ +E+A+S E +A ++D+A A L Y ++ Y+ ++++++ ++ +A + ++ AY NLGL Y ++ FE+AV Q+ L+ A + + + +LG+ + + + + + + E ++ AE+ +A H L L GN+EEA+
Sbjct: 589 DIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQ 1137 HSP 4 Score: 129.798 bits (325), Expect = 6.117e-30 Identity = 115/443 (25.96%), Postives = 208/443 (46.95%), Query Frame = 3
Query: 234 FATVAIIGQELLASDELQPAITVLESSLQLG--TDDLSLKGSVYSALSSAYWKNGNVKRALHFMHQDLLTVESLDDNSGVCRVHGNLGNAYFCQNLLSDAQQHHQMQLDIATQQDDTRQAANALTALGHVFVASGDYENALSHHKRS-AVLRQEIGD--LLHEAKELANVGAVYALLGDFDNAIKCQEEHLKIVMDLEEHFEICHAMSLLGGLYQRIQKYEQSAKIYQEMFRISQESNDYENQCNALSGLGMAYRLQGKLKMAENCHEQQLKIAIEIQNRSLEAKAQADLGLTYQEKKDFAKALEYQKSYLESCRTIDDREGESRAYGNIGDAYQALEQHERAIKYYKLGLSVAKDVDDHHLEGSLHGKIAASYQALEMVDNALKHHKEYLSIAVELKDLRAECTAECNLGNFYSQQERFEEAVSHYENGSAVANKLQDKAEM 1547
F + +G + ++ AI E L L D L+ S Y+AL +AY +AL + Q+L + L D G CR HG+L Y + A + ++ QLD+ + D A +G + E A+ + ++ A+L+Q G+ +L + N+G Y LGD++ AIK E++L + L + A LG ++ + +Q+ +++ ++ E + N+ A LG + G + A +C E+QL IA ++++R+LE+ A LG YQ+ ++ AL+Y + L+ ++ + RAYGN+G Y++L ERA+ Y + LS+A ++D + + + ++ AL+ A+ + +E L +A +L E LG EEA SA+ ++ +A++
Sbjct: 714 FRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQL 1156 The following BLAST results are available for this feature:
BLAST of TCONS_00024269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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