TCONS_00024272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024272
Unique NameTCONS_00024272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024272 ID=TCONS_00024272|Name=TCONS_00024272|organism=Clytia hemisphaerica|type=transcript|length=2317bp
GGTCGAGAAAGCACGCCAACGTTTAGCCTCTGATCGTCGAACATCTCTCT
ACGTTGCCGAGTCTAGTATCAATAAAAAGATCGCTCCTGGAACTCATTGG
AAACCTATTTTAGCTGCTTTGGGATTCCGCTTTGAGAAAGCACAAAACAA
TCTGCCAGATGCTGTTTTCTTTCCTGGGATGGAATGCACTGATACATTGA
ATAACAGCAGTAATACATTATATGCCTTTTTAGGTTTGAGTCGCAACGGA
CTGGAAGCTATTGCCAAATTGAGGTCCAGCCCATATATTGGATTACCCCT
TATCAAGATGtTACAAGAAGTATTATACTATTTTAACCAAGACATGTCCA
ACGTACAAGTTCCATTTCCTCTTCCATTGTGGAGAGTACCCGGATGTCAT
GAATTCCTTTCTTCCGTTGGTTTTGAACTGATGGGAATCGGTAAAACGGA
AGTTATGTTACGTTCTGGTAAAATCACCATGCGTAGACCTCTCCAATGCG
CATTACAAGCTTCTAAAGATCTTTTCGaaCACATGGAACAAACAGAACAA
TCAGACGAAAAACACATCAGCAACGGTAACAAGTCACAATCAGAATCAAT
AATCAAACCAATGTCACCGGTAAGCAaaaagaaccaatcagaaaacaCCA
TCAATTATATCAACAATTCCATCAACGAGATGTCATTATCTAAACAACGT
CTCACCCAATCTAATGAGAATTtaacaaacaattttttgaattcTGATCG
TGGATTATGGAGTTCGAAAGATTCGGTTGGTAATTCATCCAGCGCTGATG
GTGGAGCTGCTCGTAAACTCCGTCAACGAAACCAAGAAGCAATGGGTATG
AAATCAGACATGAAACGATACGGGACAATGGAGAAATTAGATGTCAGTGA
TTTGGTTTTAACTGAAGGAAATACATTCTCAGATGACGAAGGAGATTCAG
GAGTTCTTGATTCACCTTCTCAAGCCAGTAGCAGTGAAAGAGGTGGCGTG
GCCTCACCTGATATCTTTTACGGAGAAGATGTTGAGcatttcctggaaaa
ttttcatcgtcaaaaattaaaacaatcacCACGTGTGGCAAAGCTATCCG
TACAAAGCGGTTCAAGTTCTGCGAATTACTCGACACCAGACCAACGAAAA
TCTGGTCTTCAAACTGTTAACACCAAACCACGCATGCGCTCTCATAGTGA
ATTTTCGGACAGCTTTTTAACAGAAAGTGGTGAACATATGCGAAGAATTG
ATAGTATTTCCAGTGAAGATAGTGACCACGTGTACCAAATACCACGTGAT
CCACCACGGCCTAAAGAAGAAGATGATATTTTCAATGGAGAAGAACAAAC
ACGAAAAACGAAAATTCCAAACGAGTGGAAGAAACTTCAACTAACCAATG
attactttcaaaacaaaacgcTCATTAAGACAGCCTCTATTCGGGAGACA
TTGAGTATTGATTCAGGTGTTCATTCACCTTCTTTATCGGACAGTCATAA
ACATTCCCGACAGACGTCCGGTGGGTTTAACGACCTCGACATTGATTACA
CCGACAGTAAACGTTCTTCTCCCGATGTGGATCGTAAAAGCTTAGAAAGC
TCCGACGATTTAGAAATCAGTAAGAAAAAAGGCTGGTTCACTAAAAGACG
gaataagaaaaaacaaaaacaattaagCGAAGATGATTCGAATTCGCATA
CCTTACCTGCAGCCTATGCTCGTCAAAACATGAAAGAAATGAAACGCTAT
TCGGTCGACGCGCTTTCCTTTTTGGATAATACTGACAGCAGGCCACAACA
AAATGGAAATGAACATGGCCGTAAAGGGGCACGTAAAAGCGAAGgggatt
tgaatttgaatttgaaacatGCTGTTAATCCACAACCGACACAACAGCAA
CAAAATCATTTACACCCTGCTTACCCTACAACTCAGAATGAAGATGGTGT
TCAAATGTCGTTGtgttaagtgttttaaagctctatttaaattatgaaaa
ttttttgttattgttttgtctaagaatcttttataaaaattattgcAAGC
AGAACAAAATGATATGTAGAGAAAATTTTATCGAAACAGATTCGAACAAA
TAGCTTTTACGAACTACGcgtttttttattgataagaacaaactatataa
gaacataaggcttcgatggccaaaattttaagaacatgttaagaacattt
tagggcttTGCGGACTATAAAACGCCCGAtttcttaaccctttgagtgcc
agggtccttttttctaagttttttttaaaaaatcgctagttcaaacttta
agggcttatatctcctg
Run BLAST on NCBI

transcript from alignment at sc0000486:62811..71965+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024272 ID=TCONS_00024272|Name=TCONS_00024272|organism=Clytia hemisphaerica|type=transcript|length=9155bp|location=Sequence derived from alignment at sc0000486:62811..71965+ (Clytia hemisphaerica)
GGTCGAGAAAGCACGCCAACGTTTAGCCTCTGATCGTCGAACATCTCTCT
ACGTTGCCGAGTCTAGTATCAATAAAAAGATCGCTCCTGGAACTCATTGG
AAACCTATTTTAGCTGCTTTGGGATTCCGCTTTGAGAAAGCACAAAACAA
TCTGCCAGATGCTGTTTTCTTTCCTGGGATGGAATGCACTGATACATTGA
ATAACAGCAGTAATACATTATATGCCTTTTTAGGTATGTGAAATATATGT
CTGTTTTATCGgggatccaaaaaatatcagcaatctgattggttaaaaag
agtacaatatatcttgtattttacatgtaaaaatataaattgacgaaaag
atgttgttgcagcattctaacgtcactttgctacaaaagtgccctgcact
tttttcacacaaaaagtgcattttttagatcaccgataaaccagttatca
gacatttgctcgtacaatatggaaatatttcactcgttccggactCGTAC
TCGTAattgtccgataactattacttatcggcgatccaaaaagtatcagc
aatctgattggttcaaaagagtacaatatatcttgtattttacatataca
aaatataaattgacgagaagatgttgttgcattgtagcggtagcagcaat
ccAACGTCACTTTGCTGAAAAAGTGCCTTGCAAATATTGTACNTTTCGAC
GGCCCGAATGCACCAGCCTACCAATTTCGATATCGTCGCCCGAATAAACC
TGACCAAGAAAAAAGACATTCGAGAAATTATAACTGGTTTACAGAAGCTC
CTATAGAAGACATGTATGAACTTTTCGTGGAAGAAATTGATGATTATTTT
AATCAAATGAAGGAAGAAGGGCACTTCAAAATGAACaatattgatttgaa
aataatcgtACCTAAAGAACTTGCATTAATACCATTCCCACTACTACGCG
GTCAATCTTTTACCAAATCTTTCAGTGAACAATATAATTTATCGTACAGT
CCAAACTTGTTTTGGTTTTTAGAAACCAAATCAGAAATCAGTagtgaaaa
cattgaaattgaCCCTGAATCAGAGAACGTGTTCATATTTGGCGGTGGAA
GTGAATTGGTTGCTGAGGAAGCGAGAGGTGTTGCTAAGGTCTTTGGTACG
GCACCGACAACCGGGAATTCGAATCTCAAAGAAGATATTGTCGATCGATT
AAACAAAACTATTGTCTGCCATCTTTCATCAGATGTTGCCTGGCAAACAC
CATCATTTGTGTTTCCGTGTAAAGTCATCACCAAAGATGCTGTTCGGTCA
CGTAACTTTAGCGCTGATCCCGATATTGAAGATTTGGAACCCGATTCAAG
AGCCGGGTCACCCGGTTTATCCGATGTGTTTATTACAGCTAAAGACATCT
ATGAAATGAATTTGAAAACGAGTCTCGTCATGTATGGTATCTCTTCACCA
AGTGAATATACAGACCCAATCTGTGCTGATGGTTTATATCTTCTTATNTG
ATACATTGAATAACAGCAGTAATACATTATACGCCTTTTTAGGTATGTGA
AATATATGTCTGTTTTATCGgggatccaaaaaatatcagcaatctgattg
gttaaaaagagtacaatatatcttgtattttacatgtaaaaatataaatt
gacgaaaagatgttgttgcagcattctaacgtcactttgctacaaaagtg
ccctgcacttttttcacacaaaaagtgcattttttagatcaccgataaac
cagttatcagacatttgctcgtacaatatggaaatatttcactcgttccg
gactCGTACTCGTAattgtccgataactattacttatcggcgatccaaaa
agtatcagcaatctgattggttcaaaagagtacaatatatcttgtatttt
acatatacaaaatataaattgacgagaagatgttgttgcattgtagcggt
agcagcaatccAACGTCACTTTGCTGAAAAAGTGCCTTgcaaatattgta
cggaaaaatctcggaactcgtaaaatatttctcatattgtactcgcaact
gttcAATAACTATTACGTATTTTATAGATTTACTCAATGGGCtctccaga
aaatttttgtacatgagGGTGgtggatatattggatattttgtccagggg
tagtgaaaaatctgcaaaatttgccttgttttaggggcaaacttgctctg
attaggggtgattttgatTGTCCGGGGGTCAATTGATGGTTGTCCGGGGG
Ccaaattcacaatgtccggggggtaaatttccaaaaaatgttatatcctc
caccccccatgtacaaaagttttctggaagagcccaatactaCAATCTTA
GCAACAAACTTCTGTTAAGAATGTCTTCgtaaattgtttttcaaaaagct
ctacttaacgCCAACAGCCAAGGATAACATTTGATTGCGGTAATAATACC
TCATGCGATTTTTTTCACATTGCTTTTGAATCGATGCATATGTATTAGAC
TGCAACCTTTTTTCATAgaccttaaagggacataaaagaagtaaaatgta
aatattgtGCGAACCacatgtcattaaagagaacaattaaaatcacgtgt
tcaaaacaaacttgtaaaacaattgaaacaatcaaaatcagccatatttg
ttttgatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtcccgctgcatacggtttgtttacaaatttcgtcagtac
ttttatgtccctttaattaCAGTAATACTTTCCAATAGACCAGCGTCCGA
cattcaaaaaaggccttaaaaatggttttcgtagggcaccccttagatca
gggcaaattttttatattatgctgctaatagggtgtagaattaacaaaaa
aaatttgcccttcgaatctcctgcagttttcgagtgaatcgatttttagt
taatcgatagaacttatcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNccctattaggagcataatatcaaaaatttgccc
tgatctaaggggtgccctacgaagtgacacaatccactacctcggccgct
ggtctacaAGGCTACCCTCGACTGACCGAAGTTAAAGGAAAAATTCCAAC
TCATTAATCACTTACTTTTTCATTAGGTTTGAGTCGCAACGGACTGGAAG
CTATTGCCAAATTGAGGTCCAGCCCATATATTGGATTACCCCTTATCAAG
ATGGTAAGTTAATATAATGTACATTTTAGTCCACcaattgttttttaaaa
gaacaagttgagaacattttaaggctttggggactctaaaacacccgatt
ctCAGAAAAACGCAcagaaatactcacaaaatggcaaaaataaaaacatg
ttaagaacatttttaggctcgaaatccaaaaagttaagaacatccaaaat
gcttcaaaaattttggatgttcttataaaaaaaggtgtatctAAACAAAT
CTTGATTCAATCTTCTAAAAAATGTCTCAACTGACTCAACTGTAATTTTA
TGTGATTTTCTTGATAGCGAATTGCCaattaagataaaaaaatgcaaagt
gGTTCATCTCAGTTTGATGTAGAGGTTAAAACTCTATTTCCTCTTTCAAA
GAAGGGCCTAAATTGGGAGTTTGTGTTGTATTTCTTCGCACATTTTCTCG
ATATTGTGTATATATGTAATATTTATGTTGTAAAGGGTTTTTATCTTCTC
CTCATAGAGTGCTCGATAAATTAATAGAGCGTAgatataataaagagttg
acacaatttcactgaagattggtgcctgtgcaccatgaaactctgagttt
gaaacaaagatattgtgtcaactctttattatatatgtaatatttattta
cttttcagtTACAAGAAGTATTATACTATTTTAACCAAGACATGTCCAAC
GTACAAGTTCCATTTCCTCTTCCATTGTGGAGAGTACCCGGATGTCATGA
ATTCCTTTCTTCCGTTGGTTTTGAACTGATGGGAATCGGTAAAACGGAAG
TTATGTTACGTTCTGGTAAAATCACCATGCGTAGACCTCTCCAATGCGCA
TTACAAGCTTCTAAAGATCTTTTCGGTAAGGAGAaacaaatatctttgtt
aatCATAAACcataagaccatgttcagacgttttGTTTCGTTTCCGagac
aagtgtgaacgtcaaaattcgaaacgccAGAAAAGAAAACGTTAcataca
aagcaaaacagatcaaaacggtttcgctccacttttttcatcggaacgga
acagctccattttcttgctccgaaacgttccgaaaccaatatgaacacac
tcgatctgTAACGAAATTCATACCGGATcaaaacggaacagtaacgtgtg
aacatggtctcagTTTTGAAGCCTATAGACTATGAAATTTTCCATCCAGA
AATGTATCTTGTACTAGACTGAGTCTGAGAAAATAAGTACATAAGAGTCT
CTATAACTCCTTAAATGAAAAAGTCTCcttaaatgaaaaagttttctcgT
TTCCTCAGTTAACATTGCCTAAgtcttactccataactcgataCTTCCTT
AACTCGGACAAAGTTGTGTTTCTCGTGcaaaacatttcattttaaatGCA
GGCTAAGGTGTAAAATTTGTGTTCTGTTTGTATACTATAATCGTTCTCAT
AATCTAAATTtcctttcaaaaaatagaaCACATGGAACAAACAGAACAAT
CAGACGAAAAACACATCAGCAACGGTAACAAGTCACAATCAGAATCAATA
ATCAAACCAATGTCACCGGTAAGCAaaaagaaccaatcagaaaacaCCAT
CAATTATATCAACAATTCCATCAACGAGATGTCATTATCTAAACAACGTC
TCACCCAATCTAATGAGAATTtaacaaacaattttttgaattcTGATCGT
GGATTATGGAGTTCGAAAGATTCGGTTGGTAATTCATCCAGCGCTGATGG
TGGAGCTGCTCGTAAACTCCGGTAAGATATAGTTAGAGATGGAACCCTtg
aatgggaaatgaaaccaacTCCTCTCAAAAATGCATGACACATGCGGCtt
tcacacaaacgccggattgaaaataaaatatatatcgctagattttgaca
aatatgcagcgtgaaaacaaaaaaagcacTAGATTCGATCCGGCGCAGAT
CTTTAAGCTTCCCGTTTTCTTGTATGAGAAAGGTTGATGATTCTGCTTTT
GCCCTTTGGGCTTCAATCTTTaaacttctttttcttaatcaATGTGATAA
CCAAGAAGCCATGGTCATAGAACATTGATTGTATAAGCCATAAACCACCC
TCGGGTCCGGTGGAAccaccgtaaaagtggggaggctaaaggctcaaaat
gataaaaactcACTCGCTAggaattcgagaaaaaaaatcttatttgctCA
AAGTTGggagtctccccgcttccgccgggctTCGAGCCTTTGATCCTATT
TAGTTTAGATATTACAATTGTCCACACttgtaatttgtaattttttgata
ttttcgtcTTTCAATTTCTTAGTCAACGAAACCAAGAAGCAATGGGTATG
AAATCAGACATGAAACGATACGGGACAATGGAGAAATTAGATGTCAGTGA
TTTGGTTTTAACTGAAGGAAATACATTCTCAGATGACGAAGGAGATTCAG
GAGTTCTTGATTCACCTTCTCAAGCCAGTAGCAGGTAGCTCATCTAAAGC
AATTTTCGTTTAAGAGTACTATACATTTGTTcataagcaaccaggttgct
tAGGCTAACGGTattaaatacaccttttcgaccgtagccgccaattgccg
cgcgggcattttttgccTGTTATAcaaccctaaaaccgtcccagtcttat
tttcgcacctaaaggaaaaaaggaaaaagtgtaaaaaaggattggatcga
gtttagggggataattaaataaaaaagtggcacgcgcctgatcGTGTGAC
TACGGTCTAAAAGGTGTATTGACCATAATGGAAATTTCTGGAACCTGAAC
AAACTTCATGTCCCTCTTGGTGCTCAAGTTATAGAGACTACTAAGAATTA
GTGCATATACTGAATAAGAACGCAAAAAAAAACACTGTTGATTATCCTGC
ATTTTATACAAACGAAATTGTTAGTAAGTGTGACCTTTCTCCTTTTCTAT
CACAGTGAAAGAGGTGGCGTGGCCTCACCTGATATCTTTTACGGAGAAGA
TGTTGAGcatttcctggaaaattttcatcgtcaaaaattaaaacaatcac
CACGTGTGGCAAAGCTATCCGTACAAAGCGGTTCAAGTTCTGCGAATTAC
TCGACACCAGACCAACGAAAATCTGGTCTTCAAACTGTTAACACCAAACC
ACGCATGCGCTCTCATAGTGAATTTTCGGACAGCTTTTTAACAGAAAGTG
GTGAACATATGCGAAGAATTGATAGTATTTCCAGTGAAGGTAAGTTGAGC
TTTTTTCTGTCAAAAGTCAGTAAAAATGATGATAAATTGCAAGATATTTC
ACATTGAACTGGCGattatgtggagcaagattggtcaaaaagcggaaaag
ggaaacatttttttgcttatatcagcataacataGCAATAGGCAGCCACT
GTACTGATATGGAATATGTgactgatatgaaacgggaacatttatgtaag
aataaaacctttaaatttcatcgTACAATTCATCATCCTTTATACGTTTG
ATCTGGGTAATATGAATTCAAAAAAGACCCTAACCCTAAAAAGCAAGATT
TGTAACATAGGTTCCATTTCCTTATCCCTGACACAAAACATCAGAATAGC
TTGAAACAGCGTTGTTTGCCAGTTGAGACTCTTGTTATTGTATtgatgat
atgatatgatatgacaTTCCCCACTGGGGAATGGGCCCTACTCCTTGCGA
AGTAGGAAATCCTCCTCTTTCGATTTGGAACGCTTAGCGCTGTCCAGACA
CCGCTGGTTCTGTGCACGCGAGACAAAGATATCATGATGCATAGTGATGA
CACTCGAACCACGCGGGAGAGCATATAGCTCGTCGCCTTGCATATCACCC
ACACTTATGTATCAGATtagtggtacccaattcccctcacatggtatggg
ttgacccaggCGAAGGTGTGTTCATTTGCAAAGTGAACCGTAGTACTaca
gtgggaatcgaactcgAGTCTCCCAGACGGGAGTCAAGAGCGATGACCAC
CACACCACTACGCCTTAGGTATTGCTTAGGTATTGTATCGTTGAACAATT
TCTATATGCTTCTGATATATTTGCTGAACtcgatttcttttcttttcgat
ATTCAGATAGTGACCACGTGTACCAAATACCACGTGATCCACCACGGCCT
AAAGAAGAAGATGATATTTTCAATGGAGAAGAACAAACACGAAAAACGAA
AATTCCAAACGAGTGGAAGAAACTTCAACTAACCAATGattactttcaaa
acaaaacgcTCATTAAGACAGCCTCTATTCGGGAGACATTGAGTATTGAT
TCAGGTGTTCATTCACCTTCTTTATCGGACAGTCATAAACATTCCCGACA
GACGTCCGGTGGGTTTAACGACCTCGACATTGATTACACCGACAGTAAAC
GTTCTTCTCCCGATGTGGATCGTAAAAGCTTAGAAAGCTCCGACGATTTA
GAAATCAGTAAGAAAAAAGGCTGGTTCACTAAAAGACGgaataagaaaaa
acaaaaacaattaagCGAAGATGATTCGAATTCGCATACCTTACCTGCAG
CCTATGCTCGTCAAAACATGAAAGAAATGAAACGCTATTCGGTCGACGCG
CTTTCCTTTTTGGATAATACTGACAGCAGGCCACAACAAAATGGAAATGA
ACATGGCCGTAAAGGGGCACGTAAAAGCGAAGgggatttgaatttgaatt
tgaaacatGCTGTTAATCCACAACCGACACAACAGCAACAAAATCATTTA
CACCCTGCTTACCCTACAACTCAGAATGAAGATGGTGTTCAAATGTCGTT
Gtgttaagtgttttaaagctctatttaaattatgaaaattttttgttatt
gttttgtctaagaatcttttataaaaattattgcAAGCAGAACAAAATGA
TATGTAGAGAAAATTTTATCGAAACAGATTCGAACAAATAGCTTTTACGA
ACTACGcgtttttttattgataagaacaaactatataagaacataaggct
tcgatggccaaaattttaagaacatgttaagaacattttagggcttTGCG
GACTATAAAACGCCCGAtttcttaaccctttgagtgccagggtccttttt
tctaagttttttttaaaaaatcgctagttcaaactttaagggcttatatc
tcctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013624XLOC_013624Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024272-exon-sc0000486-1491911889:62811..63043TCONS_00024272-exon-sc0000486-1491911889:62811..63043Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1510915933:62811..63043TCONS_00024272-exon-sc0000486-1510915933:62811..63043Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1575043694:62811..63043TCONS_00024272-exon-sc0000486-1575043694:62811..63043Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1491911889:66737..66813TCONS_00024272-exon-sc0000486-1491911889:66737..66813Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1510915933:66737..66813TCONS_00024272-exon-sc0000486-1510915933:66737..66813Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1575043694:66737..66813TCONS_00024272-exon-sc0000486-1575043694:66737..66813Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1491911889:67469..67685TCONS_00024272-exon-sc0000486-1491911889:67469..67685Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1510915933:67469..67685TCONS_00024272-exon-sc0000486-1510915933:67469..67685Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1575043694:67469..67685TCONS_00024272-exon-sc0000486-1575043694:67469..67685Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1491911889:68287..68581TCONS_00024272-exon-sc0000486-1491911889:68287..68581Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1510915933:68287..68581TCONS_00024272-exon-sc0000486-1510915933:68287..68581Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1575043694:68287..68581TCONS_00024272-exon-sc0000486-1575043694:68287..68581Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1491911889:69133..69294TCONS_00024272-exon-sc0000486-1491911889:69133..69294Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1510915933:69133..69294TCONS_00024272-exon-sc0000486-1510915933:69133..69294Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1575043694:69133..69294TCONS_00024272-exon-sc0000486-1575043694:69133..69294Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1491911889:69766..70049TCONS_00024272-exon-sc0000486-1491911889:69766..70049Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1510915933:69766..70049TCONS_00024272-exon-sc0000486-1510915933:69766..70049Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1575043694:69766..70049TCONS_00024272-exon-sc0000486-1575043694:69766..70049Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1491911889:70917..71965TCONS_00024272-exon-sc0000486-1491911889:70917..71965Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1510915933:70917..71965TCONS_00024272-exon-sc0000486-1510915933:70917..71965Clytia hemisphaericaexon
TCONS_00024272-exon-sc0000486-1575043694:70917..71965TCONS_00024272-exon-sc0000486-1575043694:70917..71965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000486supercontigsc0000486:62811..71965 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27849	2.69368	0.550415	0.291935	1.83986	0.824488	3.0181	4.20166	1.90783	3.19808	1.33201	1.57158	6.0579	4.01998	8.24532	7.67308	6.72504	9.90996	9.74564	11.0749	4.63273	4.83317	4.14216	4.75659	1.01283	2.9979	13.6812	7.95056	23.1141	24.446
Blast
[Close]
BLAST of TCONS_00024272 vs. Swiss-Prot (Human)
Match: TTC28 (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 134.42 bits (337), Expect = 5.542e-32
Identity = 72/194 (37.11%), Postives = 113/194 (58.25%), Query Frame = 2 
Query:    2 VEKARQRLASDRRTSLYVAESSINKKIAPGTHWKPILAALGFRFEKAQNNLPDAVFFPGMECTDTLNNSSNTLYAFLGLSRNGLEAIAKLRSSPYIGLPLIK--------MLQEVLYYFN-----QDMSN--VQVPFPLPLWRVPGCHEFLSSVGFELMGIGKTEVMLRSGKITMRRPLQCALQASKDLFEHME 538
            VEK+ QR+ + +R ++Y ++ S+  K+     W+ +L A+GFR +   + LP AVFFP  +  D L   S+TL + LGL    L+A+ KL ++   G  LI         ML +VL         QD+++  +QV   + LWR+PGCHEFL+++GF+L  +G+ EV+L++GK   RR +  ALQ+   LF+  E
Sbjct: 1749 VEKSLQRIQNGQRNAMYTSQQSVENKVGGIPGWQALLTAVGFRLDPPTSGLPAAVFFPTSDPGDRLQQCSSTLQSLLGLPNPALQALCKLITASETGEQLISRAVKNMVGMLHQVLVQLQAGEKEQDLASAPIQVSISVQLWRLPGCHEFLAALGFDLCEVGQEEVILKTGKQANRRTVHFALQSLLSLFDSTE 1942
The following BLAST results are available for this feature:
BLAST of TCONS_00024272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC285.542e-3237.11Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
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