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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024273 ID=TCONS_00024273|Name=TCONS_00024273|organism=Clytia hemisphaerica|type=transcript|length=4107bpRun BLAST on NCBI protein sequence of TCONS_00024273-protein >TCONS_00024273-protein ID=TCONS_00024273-protein|Name=TCONS_00024273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=651bp MSFVKKVKRLSRFMADENITTKMADAHDEIEEKSNLSSSDEIDETDSPDARun BLAST on NCBI transcript from alignment at sc0000486:75124..90822+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024273 ID=TCONS_00024273|Name=TCONS_00024273|organism=Clytia hemisphaerica|type=transcript|length=15699bp|location=Sequence derived from alignment at sc0000486:75124..90822+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000486:75124..90822+ >TCONS_00024273 ID=TCONS_00024273|Name=TCONS_00024273|organism=Clytia hemisphaerica|type=CDS|length=19560bp|location=Sequence derived from alignment at sc0000486:75124..90822+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024273 vs. Swiss-Prot (Human)
Match: SWP70 (Switch-associated protein 70 OS=Homo sapiens GN=SWAP70 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.687e-33 Identity = 102/350 (29.14%), Postives = 173/350 (49.43%), Query Frame = 1
Query: 586 GTLSKELKALEYFTANGLRQAFNVLDPKGTGKVTKTQLQILCINLCNVINVQFSPEDIMKF--KDGEKELQFQDFIAYIGSKLLRKMDEKVVDSTKLDEISWTIVEKQRKAFLTGDKKL-TDNELFMIWQAFNKINIDNTVNIDI-EETALFLEEFMTAMGTPWTRGPLD----DFANGKIKLTFWEFIDCLEN-KYILSTPKSVYQFGLDKVNDVYVKEIMKTGLLTKKGHKVKSMKERFFVLSPQLLTYYEGKSSNGKRKGVIFVAKQSKVEGIDDSKTSKCRFSILCAQKNVPYEMEACDPKTKNEWIAKVQRCIDCGNL--TPLMRELKDRSLERMKRRKKIADEE 1602
G+L +EL + AF LD +GKV+K+QL++L NLC V+ V P + + D E + Q ++ Y+ +L K+ + D + + + WT+ K+ LT + L T+ + F IW FN ++ D I + EE L++ AMG W + + +F + K L+ WE I+ + N ++ + +++V + + +++K G + KKGH+ K+ ER+FVL P +++YY + K KG I + + VE + D KC F + C K +E+ A D K K EWI + I L P +E + R E R+K++A++E
Sbjct: 2 GSLKEEL-------LKAIWHAFTALDQDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDDEGPVSNQGYMPYLNRFILEKVQDNF-DKIEFNRMCWTLCVKKN---LTKNPLLITEEDAFKIWVIFNFLSEDKYPLIIVSEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKNGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDK-KGDILLDENCCVESLPDKDGKKCLFLVKCFDKT--FEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEARQRRKEL--RKKQLAEQE 335 The following BLAST results are available for this feature:
BLAST of TCONS_00024273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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