TCONS_00024283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024283
Unique NameTCONS_00024283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024283 ID=TCONS_00024283|Name=TCONS_00024283|organism=Clytia hemisphaerica|type=transcript|length=896bp
TTGCAGCACCAAACTATTTATCCGTTGGATGCATGGTACATGTATTGAAA
CACCACCACAGTACTCCAACAATGAGGACGAACCAATTATCTTCAGTTTC
TTCAAAGATCTTTCAGCACATCCTCAAGTCATCGAATTAGTTGTCCAAGT
CTCCAAATCTGTGCAAAGTATCCTGGGCGGATTGAACAAGTACCTCAATA
AGTGGAAACGCTATCGAAGGCTTTGGAGTCTTGATAAGGTATATTAATCT
CTATTTTATTaaagaatcaaaatttatttcataatCATAGTAAAAGCTTT
TCGCCCACGCCATCGTCAGTACAAACACTTCATACTTTATATTCATTACA
TTGTCATCGATATAcggaaaagaaaagtttttttttaaccaaGAAGTCGT
TAACTATAATTTAGATGATAAAGGACGGACTATAATGTATTAACCTGCTT
ATGTAGCCAACATTGCCAGCTTTCTGATTTATTTGATTCAACAAAATTGT
CAGATTAATTGTTTTTGATATGAAGATCTTATATAATCTCAAGTGGTCTT
CCAActcctttttgttttttatgcGATGTCAGCAttctttttaaagttct
tttCTTTAAGAATTGTCTACGGTACAGTTTCCAACATTGTTTTCCTGTTA
AAAAcattgacctttatatatccctggaccaagctaatatccgccatctt
tgattgaagttttttttttgaattggtacccgtaaagaagccatgcAGTA
TTAAAAAtcaacgtctaacggcgctacatcatcaaaagttttcgagggaa
agtagatctagcgctctcgatgcatttacaccgctattgagtagtaccgc
cattagggtaccacttttcaaaaaactccgatcaaagattttgctt
Run BLAST on NCBI

transcript from alignment at sc0000486:133363..134258+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024283 ID=TCONS_00024283|Name=TCONS_00024283|organism=Clytia hemisphaerica|type=transcript|length=896bp|location=Sequence derived from alignment at sc0000486:133363..134258+ (Clytia hemisphaerica)
TTGCAGCACCAAACTATTTATCCGTTGGATGCATGGTACATGTATTGAAA
CACCACCACAGTACTCCAACAATGAGGACGAACCAATTATCTTCAGTTTC
TTCAAAGATCTTTCAGCACATCCTCAAGTCATCGAATTAGTTGTCCAAGT
CTCCAAATCTGTGCAAAGTATCCTGGGCGGATTGAACAAGTACCTCAATA
AGTGGAAACGCTATCGAAGGCTTTGGAGTCTTGATAAGGTATATTAATCT
CTATTTTATTaaagaatcaaaatttatttcataatCATAGTAAAAGCTTT
TCGCCCACGCCATCGTCAGTACAAACACTTCATACTTTATATTCATTACA
TTGTCATCGATATAcggaaaagaaaagtttttttttaaccaaGAAGTCGT
TAACTATAATTTAGATGATAAAGGACGGACTATAATGTATTAACCTGCTT
ATGTAGCCAACATTGCCAGCTTTCTGATTTATTTGATTCAACAAAATTGT
CAGATTAATTGTTTTTGATATGAAGATCTTATATAATCTCAAGTGGTCTT
CCAActcctttttgttttttatgcGATGTCAGCAttctttttaaagttct
tttCTTTAAGAATTGTCTACGGTACAGTTTCCAACATTGTTTTCCTGTTA
AAAAcattgacctttatatatccctggaccaagctaatatccgccatctt
tgattgaagttttttttttgaattggtacccgtaaagaagccatgcAGTA
TTAAAAAtcaacgtctaacggcgctacatcatcaaaagttttcgagggaa
agtagatctagcgctctcgatgcatttacaccgctattgagtagtaccgc
cattagggtaccacttttcaaaaaactccgatcaaagattttgctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013628XLOC_013628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024283-exon-sc0000486-1491911889:133363..134258TCONS_00024283-exon-sc0000486-1491911889:133363..134258Clytia hemisphaericaexon
TCONS_00024283-exon-sc0000486-1510915933:133363..134258TCONS_00024283-exon-sc0000486-1510915933:133363..134258Clytia hemisphaericaexon
TCONS_00024283-exon-sc0000486-1575043694:133363..134258TCONS_00024283-exon-sc0000486-1575043694:133363..134258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000486supercontigsc0000486:133363..134258 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0632524	0.190507	0.888323	1.47847	0.222251	0.0603894	0.212141	0.459407	0.167992	0.38736	0.123731	0.300259	0.0351386	0.148516	0.178741	0.158589	0.0411308	0.226658	0.508467	0.30218	0.582676	0.719922	0.458602	0.659205	0.238518	0.214659	0.248919	0.283187	0.134012	0.209978
Blast
[Close]
BLAST of TCONS_00024283 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 4.650e-20
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:    8 TKLFIRWMHGTCIETPPQYSNNEDEPIIFSFFKDLSAHPQVIELVVQVSKSVQSILGGLNKYLNKWKRYRRLWSLDKV 241
            TK F+RWM+G+CIE PPQ    E+E +I +F+ D+S +PQ+IE  V + ++V  IL  L KYL KWKRYR LW LDK 
Sbjct:  929 TKHFVRWMNGSCIECPPQ-KGEEEEVVIINFYNDISLNPQIIEQAVMIPQNVHRILINLMKYLQKWKRYRPLWKLDKA 1005
The following BLAST results are available for this feature:
BLAST of TCONS_00024283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH104.650e-2053.85Dynein heavy chain 10, axonemal OS=Homo sapiens GN... [more]
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