|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024287 ID=TCONS_00024287|Name=TCONS_00024287|organism=Clytia hemisphaerica|type=transcript|length=751bp
ccaTCTTCAAAGTTCATTTGCTTAAGAAGAACACACAATCACTCACAAAT
ATGAAGATTTGGAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACGCAGT
TCACTGTGAAGAGACACAAGATGAACCAAAAGCAGAACCAGCACAGGTGG
AAGATGCTGTTGAAGAAACGAAAGAAGAAGTAGCAGCTGACGAAGAAATg
agtgaagatgaaaatgaaaatgaagaagatcaAGAAGAACAAGATGAACT
ACCAGAACAAGATGAAGAAGAGACTTCTCCACAAGAAGCTGATGAACAAG
AAGATCAAGAAGATGCTGTTGAAGAAACTAATGACGAAGATGCCAGCCAT
CGACCAAGACGAAAATTGAAGTCAACCAAATTATTATTCCGATACAAAAA
TCGATTGACCAAGAACAGTTGCAAAAACCATGTCGCTCGAAGATCGTACA
AATGTTACTACAGTCGCCCAGTTTGCGTCAAAAAAGATAAATACAGAAGA
CGCTGTATTCGTTACCGTCGAACAAAATACTGCTTATACCGCGTCACCAG
AACTTGCCAATTCTGCAGCGCTTCCTACATTCAAAGATGCTATGTATACA
TTTACGGTTATGGTCGCCGTAGATACACCAAGGTTCGTTGCTTCAACAGC
AAAGACGTCGTCAAATGCAATAGACGTGTCGTCAGACGTTCAACCCAACG
CCGATTTGCTGGATTCCATTTCATCAACAAGCATTACGGTCGTTAAATAC
T Run BLAST on NCBI transcript from alignment at sc0000486:181370..182554+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024287 ID=TCONS_00024287|Name=TCONS_00024287|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at sc0000486:181370..182554+ (Clytia hemisphaerica)
ccaTCTTCAAAGTTCATTTGCTTAAGAAGAACACACAATCACTCACAAAT
ATGAAGATTTGGAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACGCAGT
TCACTGTAAGTAAACTTTATGCTTACTTTGTCCTCCCAGCTTACTTCAAA
ATAACATTACTAATAACAGAGTTATTATCAGATTTGCACGACAATGTAAG
AGCTTTATCTAACCAGGCTTCGGGACAAGAAGGGATAAAAGCTTCTTCAA
TATCCCATAGATAACAGGTGAGAaacacaaaaaagttaaaatcacACTGA
AAGAGGGTCTAAGAGCTTAAGACTGTCTGgatgaaaatgtaaaataaaaa
ttctatcaTTCCTAGGTGAAGAGACACAAGATGAACCAAAAGCAGAACCA
GCACAGGTGGAAGATGCTGTTGAAGAAACGAAAGAAGAAGTAGCAGCTGA
CGAAGAAATgagtgaagatgaaaatgaaaatgaagaagatcaAGAAGAAC
AAGATGAACTACCAGAACAAGATGAAGAAGAGACTTCTCCACAAGAAGCT
GATGAACAAGAAGATCAAGAAGATGCTGTTGAAGAAACTAATGGTATGAA
ATCTCATTCAAACTTGGTTTATATATCTCCATTTAATTAAAATGAAGAGC
GCTGCTCTGAATAAGCTATAATCATGCGAGTGCTTGATCAAAGATTTGGG
TTTCCCTGTCCATGAAGAAATCAAATATTTGCATTCATATTCCAATGTTA
TTATTCATTGTTTTTAGACGAAGATGCCAGCCATCGACCAAGACGAAAAT
TGAAGTCAACCAAATTATTATTCCGATACAAAAATCGATTGACCAAGAAC
AGTTGCAAAAACCATGTCGCTCGAAGATCGTACAAATGTTACTACAGTCG
CCCAGTTTGCGTCAAAAAAGATAAATACAGAAGACGCTGTATTCGTTACC
GTCGAACAAAATACTGCTTATACCGCGTCACCAGAACTTGCCAATTCTGC
AGCGCTTCCTACATTCAAAGATGCTATGTATACATTTACGGTTATGGTCG
CCGTAGATACACCAAGGTTCGTTGCTTCAACAGCAAAGACGTCGTCAAAT
GCAATAGACGTGTCGTCAGACGTTCAACCCAACGCCGATTTGCTGGATTC
CATTTCATCAACAAGCATTACGGTCGTTAAATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024287-exon-sc0000486-1491911889:181370..181474 | TCONS_00024287-exon-sc0000486-1491911889:181370..181474 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1510915933:181370..181474 | TCONS_00024287-exon-sc0000486-1510915933:181370..181474 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1575043694:181370..181474 | TCONS_00024287-exon-sc0000486-1575043694:181370..181474 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1491911889:181735..181962 | TCONS_00024287-exon-sc0000486-1491911889:181735..181962 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1510915933:181735..181962 | TCONS_00024287-exon-sc0000486-1510915933:181735..181962 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1575043694:181735..181962 | TCONS_00024287-exon-sc0000486-1575043694:181735..181962 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1491911889:182137..182554 | TCONS_00024287-exon-sc0000486-1491911889:182137..182554 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1510915933:182137..182554 | TCONS_00024287-exon-sc0000486-1510915933:182137..182554 | Clytia hemisphaerica | exon |
| TCONS_00024287-exon-sc0000486-1575043694:182137..182554 | TCONS_00024287-exon-sc0000486-1575043694:182137..182554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000486 | supercontig | sc0000486:181370..182554 + |
Blast
The following BLAST results are available for this feature:
|
