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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024294 ID=TCONS_00024294|Name=TCONS_00024294|organism=Clytia hemisphaerica|type=transcript|length=709bp
GTTCATTTGCTTAAGAAGAACATACAATCACTCACAAATATGAAGATTTG
GAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACACAGTTCACTGTGAAA
CAGAAGAAGAGACAAAGGGAGCAGAAATTGCTGAAGATGAACCTCTCCAA
GTGGAAATGAGTGATGAAGAAGCAAATAAATTGGAAGATGCACCAGAAGA
TGAACAAGCTGATGAAGAAGAACAAGCTGATGAAGAAGaacatgaagatg
aagaagaagattcACAAGACGTCGAACAACAAGACAGTGATGAAGATGCA
TCTTACAGAAGACGAATCTCCAGAAAAGTCATCTTCCGATTCAGAAACAG
ACGTGACCAATGCCGAACAAGCCGCCGTAACCTCAAATGCTACACTCGCC
GTCATTGCGTCAGACGTGATTACCGAAAACGATGTCTCCGAGTTTTGGTT
GTCAGAAGATGTGTTGTCCGATTCACTCTCAACTGCAGAATCTGCAGCCA
AAAATACGTCCGAACCTGTTACCGTGTCCGTGTCAAATATGGTTACGGAG
TCAAGTGCTACAACAGCCGTAACGTCACACGGTGTCGCCGAAGAAATGTC
CGTAGCTACAACAGAACACTTGTTGTCTACAAACGATACTACAACATCCG
CCCAAAATATTAAACCAAAACCGAAAATAAACACTGACTGGAGATGGATA
AGCCAAATG Run BLAST on NCBI protein sequence of TCONS_00024294-protein >TCONS_00024294-protein ID=TCONS_00024294-protein|Name=TCONS_00024294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
VHLLKKNIQSLTNMKIWKALLLVSFLVYTVHCETEEETKGAEIAEDEPLQ
VEMSDEEANKLEDAPEDEQADEEEQADEEEHEDEEEDSQDVEQQDSDEDA
SYRRRISRKVIFRFRNRRDQCRTSRRNLKCYTRRHCVRRDYRKRCLRVLV
VRRCVVRFTLNCRICSQKYVRTCYRVRVKYGYGVKCYNSRNVTRCRRRNV
RSYNRTLVVYKRYYNIRPKY Run BLAST on NCBI transcript from alignment at sc0000486:168511..169393- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024294 ID=TCONS_00024294|Name=TCONS_00024294|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0000486:168511..169393- (Clytia hemisphaerica)
GTTCATTTGCTTAAGAAGAACATACAATCACTCACAAATATGAAGATTTG
GAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACACAGTTCACTGTGAAA
CAGAAGAAGAGACAAAGGGAGCAGAAATTGCTGAAGATGAACCTCTCCAA
GTGGAAATGAGTGATGAAGAAGCAAATAAATTGGAAGATGCACCAGAAGA
TGAACAAGCTGATGAAGAAGAACAAGCTGATGAAGAAGAACATGAAGATG
AAGAAGAAGATTCACAAGACGTCGAACAACAAGACAGTGGTAAGTTTCAA
TTCTTTATTGTTCTTTTCTTTGATTGTATACGCCCCTACCAAATCATCAA
TTGTCATATTTGTCCATAATAAGGGAAAGGATCCAAGAAATCTTTGCCAA
AAATTTGTCAACTAATACTTCTTAAAGCATTTTGTTGATAAAATGTATTC
ACGTCTTTTTCAGATGAAGATGCATCTTACAGAAGACGAATCTCCAGAAA
AGTCATCTTCCGATTCAGAAACAGACGTGACCAATGCCGAACAAGCCGCC
GTAACCTCAAATGCTACACTCGCCGTCATTGCGTCAGACGTGATTACCGA
AAACGATGTCTCCGAGTTTTGGTTGTCAGAAGATGTGTTGTCCGATTCAC
TCTCAACTGCAGAATCTGCAGCCAAAAATACGTCCGAACCTGTTACCGTG
TCCGTGTCAAATATGGTTACGGAGTCAAGTGCTACAACAGCCGTAACGTC
ACACGGTGTCGCCGAAGAAATGTCCGTAGCTACAACAGAACACTTGTTGT
CTACAAACGATACTACAACATCCGCCCAAAATATTAAACCAAAACCGAAA
ATAAACACTGACTGGAGATGGATAAGCCAAATG Coding sequence (CDS) from alignment at sc0000486:168511..169393- >TCONS_00024294 ID=TCONS_00024294|Name=TCONS_00024294|organism=Clytia hemisphaerica|type=CDS|length=1326bp|location=Sequence derived from alignment at sc0000486:168511..169393- (Clytia hemisphaerica)
ATGAAGATGCATCTTACAGAAGACGAATCTCCAGAAAAGTCATCTTCCGA
TTCAGAAACAGACGTGACCAATGCCGAACAAGCCGCCGTAACCTCAAATG
CTACACTCGCCGTCATTGCGTCAGACGTGATTACCGAAAACGATGTCTCC
GAGTTTTGGTTGTCAGAAGATGTGTTGTCCGATTCACTCTCAACTGCAGA
ATCTGCAGCCAAAAATACGTCCGAACCTGTTACCGTGTCCGTGTCAAATA
TGGTTACGGAGTCAAGTGCTACAACAGCCGTAACGTCACACGGTGTCGCC
GAAGAAATGTCCGTAGCTACAACAGAACACTTGTTGTCTACAAACGATAC
TACAACATCCGCCCAAAATATTAAGTTCATTTGCTTAAGAAGAACATACA
ATCACTCACAAATATGAAGATTTGGAAGGCTTTGTTACTCGTCTCCTTCT
TGGTGTACACAGTTCACTGTGAAACAGAAGAAGAGACAAAGGGAGCAGAA
ATTGCTGAAGATGAACCTCTCCAAGTGGAAATGAGTGATGAAGAAGCAAA
TAAATTGGAAGATGCACCAGAAGATGAACAAGCTGATGAAGAAGAACAAG
CTGATGAAGAAGAACATGAAGATGAAGAAGAAGATTCACAAGACGTCGAA
CAACAAGACAGTGATGAAGATGCATCTTACAGAAGACGAATCTCCAGAAA
AGTCATCTTCCGATTCAGAAACAGACGTGACCAATGCCGAACAAGCCGCC
GTAACCTCAAATGCTACACTCGCCGTCATTGCGTCAGACGTGATTACCGA
AAACGATGTCTCCGAGTTTTGGTTGTCAGAAGATGTGTTGTCCGATTCAC
TCTCAACTGCAGAATCTGCAGCCAAAAATACGTCCGAACCTGTTACCGTG
TCCGTGTCAAATATGGTTACGGAGTCAAGTGCTACAACAGCCGTAACGTC
ACACGGTGTCGCCGAAGAAATGTCCGTAGCTACAACAGAACACTTGTTGT
CTACAAACGATACTACAACATCCGCCCAAAATATTAAGTTCATTTGCTTA
AGAAGAACATACAATCACTCACAAATATGAAGATTTGGAAGGCTTTGTTA
CTCGTCTCCTTCTTGGTGTACACAGTTCACTGTGAAACAGAAGAAGAGAC
AAAGGGAGCAGAAATTGCTGAAGATGAACCTCTCCAAGTGGAAATGAGTG
ATGAAGAAGCAAATAAATTGGAAGATGCACCAGAAGATGAACAAGCTGAT
GAAGAAGAACAAGCTGATGAAGAAGAACATGAAGATGAAGAAGAAGATTC
ACAAGACGTCGAACAACAAGACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024294-exon-sc0000486-1575043694:169105..169393 | TCONS_00024294-exon-sc0000486-1575043694:169105..169393 | Clytia hemisphaerica | exon |
| TCONS_00024294-exon-sc0000486-1575043694:168511..168930 | TCONS_00024294-exon-sc0000486-1575043694:168511..168930 | Clytia hemisphaerica | exon |
| TCONS_00024294-exon-sc0000486-1510915933:169105..169393 | TCONS_00024294-exon-sc0000486-1510915933:169105..169393 | Clytia hemisphaerica | exon |
| TCONS_00024294-exon-sc0000486-1510915933:168511..168930 | TCONS_00024294-exon-sc0000486-1510915933:168511..168930 | Clytia hemisphaerica | exon |
| TCONS_00024294-exon-sc0000486-1491911889:169105..169393 | TCONS_00024294-exon-sc0000486-1491911889:169105..169393 | Clytia hemisphaerica | exon |
| TCONS_00024294-exon-sc0000486-1491911889:168511..168930 | TCONS_00024294-exon-sc0000486-1491911889:168511..168930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000486 | supercontig | sc0000486:168511..169393 - |
Blast
The following BLAST results are available for this feature:
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