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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024326 ID=TCONS_00024326|Name=TCONS_00024326|organism=Clytia hemisphaerica|type=transcript|length=1749bp
caaccTTGGGCTTTGGAAAgATACATGCAATACGCATTGGATGAGTCGAA
AATCCGATCGCAAGACACGTCGTACGTCTTCAGTTACGTTGCCAATAGCA
ATCCGATTGGGCGAACTGTCGCATGGAATTTCTTGAAATTGAACTGGGAC
ACAATCTACGAAAAGTTCAAAGATTCTTTCTTCACCTTCCGACGAATTGT
CAGTGGTGTGACGTCAGGATTCACGACACAATATGAACTTGACCAAATGC
GAGCGTTCATCGCCGAAAAGAAGCCGGAAAATGGGCAACGTATTATCCAA
CAATCTGAAGAAACAATCAAATCCACAATCGAATGGTTGGACAAATATGA
AGAACCTATTGACCAATGGCTGTCCATTAGACTTTTTGCTGTTGCTGCTT
GAAATGCTATGAAATTTCAtggtatttgaaagtttttgtagATCATTAGA
AAACATGGGGCATAACAAACTCAAACCCAGTCCCTTTATGATTCTATTAA
CAATCATGAAAAGAGAATTGTACCAATNGAACCCAGTCCCTATATGATTC
TTTTAACACTCAAGAAAAGAGAATTGTACCAATGCCCAAATGCCCTATGT
TCCAAGTtcaaattttgagtaaaatcaaaaaggtgGTGTAAGTGGTTCTG
GGTGCGAGATTGGGGGAATGTGAGGAATAACTGGCACTcaacttcaaaac
aaagttcatttaacgttatatgaacgtccGTTATCGACGTTGTTTGgact
ttttttattctgctaGGTAATTTTGTACTAGTTAACGTTTTGGAGATTCC
TTGGTTAAACTATCATGTTACACACAGTTAGACACATTTTTATTATAAAc
aaccaggttgctaaggctcAAGGGCTCAAATCCTACAATTTTTTCgctat
ctcgtaaagtaaaagcagAGAAGAAGCTAGAATACTAAGCCACCTCAGtg
ctgacccgaaaattggagttgcttataaaaaaattgtattcttAATTTCT
TTGTCTCCCAGGAATATCTTCGTAAGACAGAACCATTGCTTATAACGTGT
AACTTTAGAATCTTTGTATtaaggtttttttttgtttttttttgtatatt
gCCCAAAACTTAGGCAGTGGCTTCGTACACTTGCTTTACCAACGGATAAA
TTCAATCTTCTACCGTCAATGGAGACGGTAATTAAATTACCTaattaaat
ttcgaaaaaaaatttcaacccaGGATACTTTATTCTTAAAcactattagg
tacccgagagaaggctttaaaatcttttattttgttttatcattttagAC
TGTTTATATCGTGTTCACATTTTATCAGAGGCTAtatttttacaaacttt
ttagtgtttttttttaagttttttttaaatcatcaaatttttttttagaa
ttttcaaatccAAACAATTTTTATTCTATAAATTATAATATATTGTTTAG
TTTAATAGTTTGTTCAATGAcagattttgatttattttgcgtttttttgt
ttatattgtcaaatttttatttcaacctattctataattaaaaaataatg
atactttcaatttttcaacatctttcaatgaccaagaaatatttctatcc
caacttacccccgtcttttctttttttctttgttcaatgaataaaaattt
taacttcATTTTTAATTGGATGAGACAAAATCATGTAAATTCAGGCCACT
TTTGGTtaaatttgtttcaattttgtatttttaattttttttagtaaga Run BLAST on NCBI transcript from alignment at sc0000487:63860..67263- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024326 ID=TCONS_00024326|Name=TCONS_00024326|organism=Clytia hemisphaerica|type=transcript|length=3404bp|location=Sequence derived from alignment at sc0000487:63860..67263- (Clytia hemisphaerica)
CAACCTTGGGCTTTGGAAAGGTGTTTTTGATTTTGTTTCCATGCACAACG
TAGAATTAGGTATTCGAAAATATCAGATTGCATAACTTTTGGAACTGTGT
TAGTTAAATGTGCCTTGGTAAGATTTTGATTGTCTAACCATGCTTTATGA
TCCCTATATTTCAAGGAAATATTGCGAAGAGCACTTTTGAGCTTGAATCT
GAGTTGATCAAGATTTTACTATATCTTTTTTCATTTTTCCCAAATCTTTA
GATACATGCAATACGCATTGGATGAGTCGAAAATCCGATCGCAAGACACG
TCGTACGTCTTCAGTTACGTTGCCAATAGCAATCCGATTGGGCGAACTGT
CGCATGGAATTTCTTGAAATTGAACTGGGACACAATCTACGAAAAGTAAG
AAAACTAAGTATAAAATAGACCTTTTCATAAATTATGTCACAAACATCAC
TTGCCTCGTATTCAAACAATTACCCTGGTGATGAGTTATAGTCACCATGG
CAATAATTTCGAAATGAGGCAAGTGATTAGCAAAAAGAAAAAACAGAAAA
TAATGTAACCGCCCGCTAATGTTGAGATTTTCATCATCTTCACGTCACTT
CATTGCTACATGTCAACAAAATTGACCTTGTTCAGAGCCATGGAATATCG
ACAACATTATACTCGAACAAGCTCAGTTGACTCTCGTTGATTCGAAATCG
AACGAGAAATCTTATTTGTTCGAATTACAGAGAGATTCAAATTAAAGAAA
GTATTTCAATTAAAACATGTTCGAATTATTGAAAAATTTTAATAATAGAA
GTTCGAATACATGGTTTTTATAAGCATACAAAATTCGAAAACAGGCTCTG
AGATGCTTTAGTCGAAGGCTTGACAAGGCTGAAAAATGATTATAAGGAGG
CTAATATATTCCAAGCAAAATTCTAGGGAAATTTCGAAAATCCGTAAAAT
CCCAATCAAAATCATAAAAATACCAGGATAGGTGTTAAGGAATTTGAAAA
GTCCTGTTCGTCGTGGTTTGTTTACAGAAAGTATTCTAAAAGGGTTTCTC
CTTGACGGGGACTTGAAACATGTTCGAATTATAGAAAGGTTCGAATAATA
GAGGTTCGAATAAGCGAGCGTTTACAGTTTTCTCGAATCATGAATTTCCT
TTTTTAATCAATTTCAGGTTCAAAGATTCTTTCTTCACCTTCCGACGAAT
TGTCAGTGGTGTGACGTCAGGATTCACGACACAATATGAACTTGACCAAG
TATGCCAATCTCTCTTTTCTTACTGTGGTCGGGAGTCGGTAGAGTATTCG
CCTTACAATCTAAGGGTTGTGGGTTCGATCCCAGGCCAGCGCCAATCCTG
AGATTGAGTAGCTTAGCAGTAGATATACTAATTTGACATGAAGTCCAAGT
ACTGGTATCCCCCACTTCCATCGTCTACATTTCGGTCAAATTCTAATTTC
CAACAAACATTAAAATACCCAAAAATCTCACTATCTTTCTACCATGATTT
TAAAATGGTTTTCTTAAAGTACTTAAAATTCTCACTATCTTTCGACCATG
GTTTTCATAACCATTAGGTAGATTTTAAATGCTGTATCAGACACATTATC
TCGTATCAGGACAGTGTCTGCATATTGTTATATTGTGCTGGTATAAGCAA
AAAATTTTTTTTTCTTTTCCCTTTTCTGAACAGTCTTGCTCCACATCCGT
GTCATCCAATATCAAAAAGCTTGTAAATTAAAATTGATGAGTAAGCAAAC
GATATCACTCTTATTTAAAAACAAAACATTTAAAGGTTAATTAAGAGGTG
TGAAAAAGATACCTTACTCACTTCTCGTACGTACCTTTATTTTGGACATA
AGGTAATTGCGACTGTGTATCTTCAGTAACTTTTCTTTCTTTTCAATCTA
GATGCGAGCGTTCATCGCCGAAAAGAAGCCGGAAAATGGGCAACGTATTA
TCCAACAATCTGAAGAAACAATCAAATCCACAATCGAATGGTTGGACAAA
TATGAAGAACCTATTGACCAATGGCTGTCCATTAGACTTTTTGCTGTTGC
TGCTTGAAATGCTATGAAATTTCATGGTATTTGAAAGTTTTTGTAGATCA
TTAGAAAACATGGGGCATAACAAACTCAAACCCAGTCCCTTTATGATTCT
ATTAACAATCATGAAAAGAGAATTGTACCAATNGAACCCAGTCCCTATAT
GATTCTTTTAACACTCAAGAAAAGAGAATTGTACCAATGCCCAAATGCCC
TATGTTCCAAGTTCAAATTTTGAGTAAAATCAAAAAGGTGGTGTAAGTGG
TTCTGGGTGCGAGATTGGGGGAATGTGAGGAATAACTGGCACTCAACTTC
AAAACAAAGTTCATTTAACGTTATATGAACGTCCGTTATCGACGTTGTTT
GGACTTTTTTTATTCTGCTAGGTAATTTTGTACTAGTTAACGTTTTGGAG
ATTCCTTGGTTAAACTATCATGTTACACACAGTTAGACACATTTTTATTA
TAAACAACCAGGTTGCTAAGGCTCAAGGGCTCAAATCCTACAATTTTTTC
GCTATCTCGTAAAGTAAAAGCAGAGAAGAAGCTAGAATACTAAGCCACCT
CAGTGCTGACCCGAAAATTGGAGTTGCTTATAAAAAAATTGTATTCTTAA
TTTCTTTGTCTCCCAGGAATATCTTCGTAAGACAGAACCATTGCTTATAA
CGTGTAACTTTAGAATCTTTGTATTAAGGTTTTTTTTTGTTTTTTTTTGT
ATATTGCCCAAAACTTAGGCAGTGGCTTCGTACACTTGCTTTACCAACGG
ATAAATTCAATCTTCTACCGTCAATGGAGACGGTAATTAAATTACCTAAT
TAAATTTCGAAAAAAAATTTCAACCCAGGATACTTTATTCTTAAACACTA
TTAGGTACCCGAGAGAAGGCTTTAAAATCTTTTATTTTGTTTTATCATTT
TAGACTGTTTATATCGTGTTCACATTTTATCAGAGGCTATATTTTTACAA
ACTTTTTAGTGTTTTTTTTTAAGTTTTTTTTAAATCATCAAATTTTTTTT
TAGAATTTTCAAATCCAAACAATTTTTATTCTATAAATTATAATATATTG
TTTAGTTTAATAGTTTGTTCAATGACAGATTTTGATTTATTTTGCGTTTT
TTTGTTTATATTGTCAAATTTTTATTTCAACCTATTCTATAATTAAAAAA
TAATGATACTTTCAATTTTTCAACATCTTTCAATGACCAAGAAATATTTC
TATCCCAACTTACCCCCGTCTTTTCTTTTTTTCTTTGTTCAATGAATAAA
AATTTTAACTTCATTTTTAATTGGATGAGACAAAATCATGTAAATTCAGG
CCACTTTTGGTTAAATTTGTTTCAATTTTGTATTTTTAATTTTTTTTAGT
AAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024326-exon-sc0000487-1575043694:67244..67263 | TCONS_00024326-exon-sc0000487-1575043694:67244..67263 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1575043694:66869..67012 | TCONS_00024326-exon-sc0000487-1575043694:66869..67012 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1575043694:66015..66096 | TCONS_00024326-exon-sc0000487-1575043694:66015..66096 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1575043694:63860..65362 | TCONS_00024326-exon-sc0000487-1575043694:63860..65362 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1510915933:67244..67263 | TCONS_00024326-exon-sc0000487-1510915933:67244..67263 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1510915933:66869..67012 | TCONS_00024326-exon-sc0000487-1510915933:66869..67012 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1510915933:66015..66096 | TCONS_00024326-exon-sc0000487-1510915933:66015..66096 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1510915933:63860..65362 | TCONS_00024326-exon-sc0000487-1510915933:63860..65362 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1491911889:67244..67263 | TCONS_00024326-exon-sc0000487-1491911889:67244..67263 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1491911889:66869..67012 | TCONS_00024326-exon-sc0000487-1491911889:66869..67012 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1491911889:66015..66096 | TCONS_00024326-exon-sc0000487-1491911889:66015..66096 | Clytia hemisphaerica | exon |
| TCONS_00024326-exon-sc0000487-1491911889:63860..65362 | TCONS_00024326-exon-sc0000487-1491911889:63860..65362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000487 | supercontig | sc0000487:63860..67263 - |
Blast
The following BLAST results are available for this feature:
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