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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024328 ID=TCONS_00024328|Name=TCONS_00024328|organism=Clytia hemisphaerica|type=transcript|length=3914bpRun BLAST on NCBI protein sequence of TCONS_00024328-protein >TCONS_00024328-protein ID=TCONS_00024328-protein|Name=TCONS_00024328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp MVVANTKVPTNMTYYAPAAQIDQIGYAMDVGSKILPHFEEFYNVSYPLPKRun BLAST on NCBI transcript from alignment at sc0000487:63860..96762- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024328 ID=TCONS_00024328|Name=TCONS_00024328|organism=Clytia hemisphaerica|type=transcript|length=32903bp|location=Sequence derived from alignment at sc0000487:63860..96762- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000487:63860..96762- >TCONS_00024328 ID=TCONS_00024328|Name=TCONS_00024328|organism=Clytia hemisphaerica|type=CDS|length=38988bp|location=Sequence derived from alignment at sc0000487:63860..96762- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024328 vs. Swiss-Prot (Human)
Match: AMPE (Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3) HSP 1 Score: 486.108 bits (1250), Expect = 1.641e-151 Identity = 262/689 (38.03%), Postives = 404/689 (58.64%), Query Frame = 3
Query: 486 VFVICDFEKRMVVANTKVPTNMTYYAPAAQIDQIGYAMDVGSKILPHFEEFYNVSYPLPKADMITIPSMSFGAMEHWGLVTYRLRALLFDQQNSAISDKYYISSIVAHELAHQWFGNIVTMDWWSDLWLNEGFASYVEYIGMDKVHPEWNVTDFQVISDVSRAMRLDSLISSHPIYIEVVKPADISEIFDGISYSKGGSILRMLDNFLGAEVFKKGLNMYLKKYSYRNAKTADLWASLSEASKLAGDNYNVTDVMNSWIFQMNFPELRIKSLNNGEFKVDQVRFLRDQNPDYSKEKFNSSYGYKWHIPFKYTTLKLDDTAKSVEVINATTLAWMKYKNITVDTG--STDYLIKGNAGQYGFYRVNYDDAGWVNMIKVLKYNHKVLAPTDRAGLMGDVFALANAGRLKEYTIALDVFDYIDADTDYLPWKAASDGINFIPGTLTSTRPAQKKITKYILGKVSALYEKYGFEDNDDFLERYLQVLIVSLACNNGHTACLGNATKLFKDWMENDKPVPGDFRSLVYYYGIKNSGIE-AWDTMFKKFQNNKIASEKTKLLYGLAAIQEPWALERYMQYALDESKIRSQDTSYVFSYVANSNPIGRTVAWNFLKLNWDTIYEKFKDSFFTFRRIVSGVTSGFTTQYELDQMRAFIAEKKPE--NGQRIIQQSEETIKSTIEWLDKYEEPIDQWL 2537
F + F+ ++N+ P +T Y Q YA ++ + +FEE++ ++Y LPK D I IP GAME+WGL+TYR LL+D + SA S++ ++++VAHEL HQWFGNIVTMDWW DLWLNEGFAS+ E++G++ +W + D ++ DV DSL+SSHPI + V P +I+ +FDGISYSKG SILRML++++ E F+KG MYL+KY ++NAKT+D WA+L EAS+L V +VM++W QM +P L + NG + Q RFL D P + + S GY W+IP K+T +D S + N + + + IT+++ S + +K N GFYRVNY+ A W ++ L NHK + DRA L+ D FALA A +L +Y +AL++ Y+ + ++LPW+ + +I + I +Y G+V + + G+ D D + + L+ ++ AC G L NA+ LF+ W+ +P + R LVY YG++NSG E +W+ +++Q +A EK KLLYGLA+++ L RY+ D + I++QD V Y++ N G+ +AWN+++LNWD + ++ + RIV+ + F T+ +L QM +F A K P+ G++ +Q ET+K+ IEWL ++ I +W
Sbjct: 288 CFAVHQFDSVKRISNSGKP--LTIYVQPEQKHTAEYAANITKSVFDYFEEYFAMNYSLPKLDKIAIPDFGTGAMENWGLITYRETNLLYDPKESASSNQQRVATVVAHELVHQWFGNIVTMDWWEDLWLNEGFASFFEFLGVNHAETDWQMRDQMLLEDVLPVQEDDSLMSSHPIIVTVTTPDEITSVFDGISYSKGSSILRMLEDWIKPENFQKGCQMYLEKYQFKNAKTSDFWAALEEASRLP-----VKEVMDTWTRQMGYPVLNV----NGVKNITQKRFLLD--PRANPSQPPSDLGYTWNIPVKWT----EDNITSSVLFNRS-----EKEGITLNSSNPSGNAFLKINPDHIGFYRVNYEVATWDSIATALSLNHKTFSSADRASLIDDAFALARA-QLLDYKVALNLTKYLKREENFLPWQRVISAVTYIISMFEDDKELYPMIEEYFQGQVKPIADSLGWNDAGDHVTKLLRSSVLGFACKMGDREALNNASSLFEQWLNGTVSLPVNLRLLVYRYGMQNSGNEISWNYTLEQYQKTSLAQEKEKLLYGLASVKNVTLLSRYLDLLKDTNLIKTQDVFTVIRYIS-YNSYGKNMAWNWIQLNWDYLVNRYTLNNRNLGRIVT-IAEPFNTELQLWQMESFFA-KYPQAGAGEKPREQVLETVKNNIEWLKQHRNTIREWF 950 The following BLAST results are available for this feature:
BLAST of TCONS_00024328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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