TCONS_00024343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024343
Unique NameTCONS_00024343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024343 ID=TCONS_00024343|Name=TCONS_00024343|organism=Clytia hemisphaerica|type=transcript|length=341bp
ACGCTTCTCCTCAAACTCTGAACCATAGTAACTCCCAACAGTACCCTTAA
ATTCCCCCTTACccacaaaaagaaaagacacaGTGTTTTCTTTAAATGTT
GGTACGATCGGGTTCTTTTGTCAGCACTGAGAATACAAAGAGCAAAGGTG
TGAACAGTTATCATGATAATAAGTCTAAATTCCCAAATCACAGCCTCTGT
ACTACTCTGTCACTACTGGTAcagaaaaattaagattaggaCCTGCACTA
CCCGTCTACATCTGGTACAAGCACCAAAAATTATTAGACCATGCACTACC
CAGCCACCACTGGTGCATGCCAGGCACTAAATAAGAAAACC
Run BLAST on NCBI

transcript from alignment at sc0000487:113502..113842

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024343 ID=TCONS_00024343|Name=TCONS_00024343|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0000487:113502..113842 (Clytia hemisphaerica)
GGTTTTCTTATTTAGTGCCTGGCATGCACCAGTGGTGGCTGGGTAGTGCA
TGGTCTAATAATTTTTGGTGCTTGTACCAGATGTAGACGGGTAGTGCAGG
tcctaatcttaatttttctgTACCAGTAGTGACAGAGTAGTACAGAGGCT
GTGATTTGGGAATTTAGACTTATTATCATGATAACTGTTCACACCTTTGC
TCTTTGTATTCTCAGTGCTGACAAAAGAACCCGATCGTACCAACATTTAA
AGAAAACACtgtgtcttttctttttgtggGTAAGGGGGAATTTAAGGGTA
CTGTTGGGAGTTACTATGGTTCAGAGTTTGAGGAGAAGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013654XLOC_013654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024343-exon-sc0000487-1491911889:113502..113842TCONS_00024343-exon-sc0000487-1491911889:113502..113842Clytia hemisphaericaexon
TCONS_00024343-exon-sc0000487-1510915933:113502..113842TCONS_00024343-exon-sc0000487-1510915933:113502..113842Clytia hemisphaericaexon
TCONS_00024343-exon-sc0000487-1575043694:113502..113842TCONS_00024343-exon-sc0000487-1575043694:113502..113842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:113502..113842 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.527191	0	0	5.04994	3.06191	11.1788	10.8842	5.00073	3.61854	6.65264	4.56739	2.27236	2.59887	0.457848	0.655121	0.403528	0.206802	0	0.896917	0.519723	0	0.393837	0	0.380919	6.43845	0.170073	0	0	1.21573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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