TCONS_00024347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024347
Unique NameTCONS_00024347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024347 ID=TCONS_00024347|Name=TCONS_00024347|organism=Clytia hemisphaerica|type=transcript|length=302bp
TGTTAATGACAATacaaaagttattgattcaAGTGATAATTGGTCCTCTC
TCTTATTCAAAGAAGCTTTATATATCAAACGCCTCAAGCCAGTTCTAAAC
AATGGCTTGAAAGCGTCTAGGGATTTGTATCTTTTTTGAATGAacttttt
acgattttttacgattttttacaattttaattactgtaattattCTCTAC
TTTTTTAACATAAGATGCAGATttgtgaatttcaattttatttctcctGA
AAGATGTGTTAGATGTACACGAAATATAGAATTTTTAACAACAACATTTA
TC
Run BLAST on NCBI

transcript from alignment at sc0000487:209787..210088

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024347 ID=TCONS_00024347|Name=TCONS_00024347|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at sc0000487:209787..210088 (Clytia hemisphaerica)
GATAAATGTTGTTGTTAAAAATTCTATATTTCGTGTACATCTAACACATC
TTTCaggagaaataaaattgaaattcacaaATCTGCATCTTATGTTAAAA
AAGTAGAGaataattacagtaattaaaattgtaaaaaatcgtaaaaaatc
gtaaaaagtTCATTCAAAAAAGATACAAATCCCTAGACGCTTTCAAGCCA
TTGTTTAGAACTGGCTTGAGGCGTTTGATATATAAAGCTTCTTTGAATAA
GAGAGAGGACCAATTATCACTtgaatcaataacttttgtATTGTCATTAA
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013658XLOC_013658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024347-exon-sc0000487-1491911889:209787..210088TCONS_00024347-exon-sc0000487-1491911889:209787..210088Clytia hemisphaericaexon
TCONS_00024347-exon-sc0000487-1510915933:209787..210088TCONS_00024347-exon-sc0000487-1510915933:209787..210088Clytia hemisphaericaexon
TCONS_00024347-exon-sc0000487-1575043694:209787..210088TCONS_00024347-exon-sc0000487-1575043694:209787..210088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:209787..210088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81058	4.08751	1.29436	0.84422	17.4719	4.06073	7.83856	5.50378	1.92666	5.9662	1.93031	3.55296	1.01372	0.263189	1.29826	0.696618	0	2.93201	0	1.69552	3.31586	2.6956	0.436914	1.98609	0.409125	0.365134	1.56752	2.23053	1.69178	1.29274
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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